LOC120095310

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Adipose gene expression LOC120095310 0.04 0.03 3.0e-05 0.03 0.04 0.04 0.04 1.0e-04 1.2e-05 1.5e-05 2.4e-05
2 NAcc gene expression LOC120095310 0.02 0.02 5.1e-03 0.01 0.02 0.01 0.01 2.0e-02 5.3e-03 1.4e-02 1.5e-02
3 Brain gene expression LOC120095310 0.06 0.05 2.1e-03 0.03 0.02 0.01 0.02 3.8e-04 9.9e-03 1.6e-02 2.9e-03

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
Bone: apparent density0.10.10.20.40.30.2
Area under the delay curve1.81.92.4-1.5-1.51.1
BMI with tail0.30.81.31.11.1-0.2
BMI without tail2.34.77.42.72.6-0.5
Body weight3.314.019.44.44.2-2.2
Weight adjusted by age3.53.94.72.12.2-1.7
Bone surface0.20.40.60.80.6-0.3
Bone volume0.20.30.50.70.6-0.1
Breakpoint value in progressive ratio session1.21.32.10.81.1-1.4
Number of licking bursts0.10.10.10.30.10.3
Context. condit. distance diff. score0.20.20.60.20.10.8
Locomotion velocity, session 11.11.22.0-1.4-1.2-0.2
Locomotion distance, session 13.64.64.9-2.2-2.22.1
Locomotion velocity, session 23.84.45.8-2.4-2.41.3
Locomotion distance, session 20.91.31.6-1.0-1.11.3
Locomotion velocity, session 31.01.11.8-1.3-1.20.3
Locomotion distance, session 32.83.04.0-2.0-1.91.2
Stereotopy head waving bouts, day 30.20.30.5-0.7-0.60.1
Stereotopy head waving duration, day 30.20.20.3-0.6-0.60.3
Locomotion velocity, session 70.80.91.0-1.0-0.90.9
Locomotion distance, session 74.35.45.5-2.4-2.42.3
Stereotopy head waving bouts, day 70.10.10.20.40.4-0.1
Stereotopy head waving duration, day 70.40.50.70.80.8-0.4
Locomotion velocity, session 81.21.41.7-1.1-1.21.3
Locomotion distance, session 81.01.43.5-0.5-0.71.9
Degree of sensitization distance0.10.10.20.50.40.2
Degree of sensitization stereotypy0.30.30.50.70.7-0.3
Conditioned locomotion2.52.94.52.11.9-0.7
Cocaine response after cond. corrected0.10.10.1-0.20.1-0.4
Cocaine response after cond. not corrected0.20.30.5-0.7-0.50.0
Cocaine response before conditioning1.11.41.6-1.1-1.21.2
Saline control response2.83.64.82.22.1-1.3
Bone: connectivity density0.20.30.8-0.2-0.50.9
Bone: cortical apparent density2.02.63.7-1.9-1.81.0
Bone: cortical area6.610.012.63.53.5-2.3
Bone: cortical porosity3.13.45.41.41.7-2.3
Bone: cortical porosity2.93.24.51.51.7-2.1
Bone: cortical thickness6.510.712.33.53.5-2.8
Bone: cortical thickness2.12.43.01.61.7-1.2
Bone: cortical tissue density2.33.04.3-2.1-1.91.0
Condit. Reinf. active minus inactive responses1.82.12.71.61.6-0.9
Condit. Reinf. active-inactive response ratio0.80.91.31.11.1-0.6
Condit. Reinf. active responses3.13.85.22.32.2-1.2
Condit. Reinf. inactive responses0.80.91.21.11.0-0.6
Incentive salience index mean1.31.62.31.51.4-0.6
Condit. Reinf. lever presses0.10.20.4-0.0-0.20.7
Condit. Reinf. active minus inactive responses0.60.71.01.00.9-0.6
Condit. Reinf. active-inactive response ratio2.62.73.01.71.7-1.5
Condit. Reinf. active responses0.00.10.10.30.3-0.1
Condit. Reinf. inactive responses0.70.91.0-1.0-0.90.9
Condit. Reinf. lever presses0.00.10.10.10.20.3
Condit. Reinf. lever reinforcers received0.00.00.10.20.20.1
Conditioned reinforcement - actives0.20.20.60.1-0.00.8
Conditioned reinforcement - inactives1.71.92.31.41.5-1.1
Conditioned locomotion0.10.10.20.50.40.2
Patch foraging indifference point 0 sec0.10.10.20.40.5-0.1
Patch foraging indifference point AUC0.00.00.0-0.2-0.20.1
Delay disc. indifference point, 0s delay0.00.00.1-0.1-0.10.3
Delay disc. indifference point, 16s delay3.53.54.4-1.8-1.72.1
Delay disc. indifference point, 2s delay0.20.20.3-0.6-0.50.3
Delay disc. indifference point, 24s delay3.73.65.2-2.3-2.11.1
Delay disc. indifference point, 4s delay0.30.40.5-0.7-0.70.3
Delay disc. indifference point, 8s delay0.50.50.9-0.9-0.80.2
Indifference point function ln k0.81.11.3-1.1-1.10.9
Indifference point function log k0.81.11.3-1.1-1.10.9
Patch foraging total patch changes 0 sec0.10.10.20.30.4-0.0
Patch foraging total patch changes 12 sec0.10.10.20.20.3-0.5
Patch foraging total patch changes 18 sec0.30.40.6-0.5-0.50.8
Patch foraging total patch changes 24 sec0.50.60.90.91.0-0.2
Patch foraging total patch changes 6 sec0.50.80.90.91.0-0.7
Patch foraging time to switch 0 sec0.30.50.6-0.8-0.80.4
Patch foraging water rate 0 sec1.52.43.31.81.8-0.8
Patch foraging water rate 12 sec0.10.10.30.10.10.5
Patch foraging water rate 18 sec0.30.30.40.60.60.5
Patch foraging water rate 24 sec0.60.91.31.11.20.3
Patch foraging water rate 6 sec0.00.00.10.10.10.3
Seeking ratio, delayed vs. immediate footshock1.11.31.91.41.2-0.7
Distance traveled before self-admin2.62.73.61.41.6-1.9
Distance traveled after self-admin0.20.20.30.50.6-0.1
Extensor digitorum longus weight0.10.51.4-0.2-0.21.2
Bone: elastic displacement1.92.12.51.51.6-1.3
Bone: elastic work10.313.314.63.63.8-3.5
Bone: endosteal estimation0.20.30.8-0.2-0.30.9
Bone: endosteal perimeter0.61.31.81.41.3-0.6
Epididymis fat weight0.61.42.31.51.4-0.2
Delta time in closed arm before/after self-admin0.20.20.6-0.0-0.30.7
Delta time in open arm before/after self-admin0.00.00.0-0.10.10.2
Diff in mean of infusions in LGA sessions0.10.10.1-0.3-0.20.0
Delay discount exponential model param2.22.33.11.81.6-1.0
Extinction: sum of active levers before priming0.70.71.2-1.1-0.90.2
Active lever presses in extinction session 60.20.20.6-0.10.3-0.8
Bone: final force5.69.111.43.43.4-2.2
Bone: final moment6.911.113.73.73.7-2.5
Food consumed during 24 hour testing period0.40.50.70.80.8-0.4
Glucose1.11.72.5-1.6-1.1-1.2
Heart weight0.40.60.70.80.8-0.8
Delay discount hyperbolic model param2.12.23.01.71.6-1.0
Intermittent access intake day 1-15 change1.01.01.10.91.0-1.0
Intermittent access intake escalation0.60.60.70.80.8-0.7
Intermittent access intake escalation 23.43.33.91.71.8-2.0
Intermitt. access day 1 inactive lever presses1.81.92.21.31.5-1.3
Intermitt. access day 15 inactive lever presses0.70.81.21.11.1-0.2
Intermitt. access escalation Index0.40.40.50.70.50.5
Intermittent access day 1 total infusions0.20.20.30.60.5-0.3
Intermittent access day 15 total infusions0.50.50.80.90.8-0.4
Intermittent access terminal intake (last 3 days)1.21.31.71.31.2-0.9
Intermittent access total infusions0.40.40.60.80.7-0.3
Intermittent access day 1 locomotion0.20.20.40.60.50.1
Intermittent access day 15 total locomotion0.60.60.80.90.8-0.6
Intermittent access total locomotion0.40.50.70.90.8-0.4
Intermittent access standard deviation0.40.41.1-0.10.2-1.1
Left kidney weight0.10.40.50.70.6-0.6
Right kidney weight0.00.00.00.2-0.00.0
Cocaine induced anxiety8.29.511.72.73.1-3.4
Post-drug Anxiety1.51.72.90.91.2-1.7
Baseline Anxiety9.510.111.1-3.2-3.33.0
Tail length3.811.517.14.13.8-1.7
Length with tail2.810.413.73.73.5-2.3
Length without tail0.30.71.70.40.4-1.3
Times rat made contact with spout2.42.83.61.51.6-1.9
Lifetime Intake0.10.10.20.40.3-0.1
Liver weight, left0.20.20.70.10.2-0.8
Liver weight, right2.13.44.82.21.9-1.3
Locomotor activity0.50.71.0-1.0-0.90.7
Locomotor testing distance0.91.51.7-1.2-1.11.3
Locomotor testing rearing0.40.60.9-0.7-0.60.9
Locomotion in novel chamber0.50.61.0-0.6-0.61.0
Locomotion in novel chamber post-restriction1.92.32.81.71.5-1.4
Fecal boli incidents, locomotor time 10.80.80.8-0.9-0.90.9
Change in fecal boli incidents, locomotor task0.80.81.3-1.1-0.9-0.5
Time >=10cm from walls, locomotor time 10.20.20.50.2-0.10.7
Bouts of movement, locomotor time 11.51.62.2-1.5-1.40.8
Total resting periods, locomotor time 11.51.72.5-1.6-1.50.6
Rest time, locomotor task time 10.10.10.2-0.2-0.1-0.4
Distance moved, locomotor task time 10.20.20.40.70.5-0.0
Vertical activity count, locomotor time 10.40.40.70.80.70.4
Time >=10cm from walls, locomotor time 20.10.10.10.1-0.20.3
Bouts of movement, locomotor time 21.71.82.0-1.4-1.41.2
Total resting periods, locomotor time 21.51.61.8-1.2-1.31.3
Rest time, locomotor task time 20.00.10.1-0.2-0.30.2
Distance moved, locomotor task time 20.00.00.00.20.10.1
Vertical activity count, locomotor time 20.30.30.80.0-0.10.9
Light reinforcement 10.40.71.31.10.90.3
Light reinforcement 21.41.83.11.71.5-0.4
Bone: marrow area0.10.30.8-0.3-0.30.9
Bone: maximum diameter1.52.74.02.01.8-0.9
Bone: maximum force5.39.111.63.43.3-2.2
Bone: maximum moment6.411.113.53.73.6-2.5
Mean time between licks in bursts1.72.42.7-1.6-1.61.3
Mean num. licks in bursts0.70.81.40.60.9-1.2
Cd content in liver2.02.22.9-1.7-1.51.2
Co content in liver0.10.20.3-0.4-0.30.5
Cu content in liver0.91.11.40.91.0-1.2
Fe content in liver1.11.31.4-1.2-1.21.1
K content in liver1.21.22.01.41.2-0.1
Mg content in liver0.50.51.40.0-0.21.2
Mn content in liver0.30.30.40.70.6-0.5
Na content in liver0.00.00.00.20.1-0.1
Rb content in liver0.30.30.60.80.70.1
Se content in liver0.20.20.30.60.5-0.2
Sr content in liver0.40.41.00.10.3-1.0
Zn content in liver0.00.00.00.1-0.1-0.0
Bone: minimum diameter3.46.48.42.92.9-1.6
Time in familiar zone, hab. session 10.10.10.3-0.10.0-0.5
Time in novel zone, hab. session 10.00.00.10.0-0.10.4
Total zone transitions, hab. session 10.40.60.7-0.9-0.80.7
Total locomotion distance, hab. session 10.10.20.50.00.10.7
Locomotion velocity, hab. session 10.10.20.50.10.10.7
Time in familiar zone, hab. session 20.40.40.5-0.6-0.50.7
Time in novel zone, hab. session 20.00.00.1-0.2-0.30.0
Total zone transitions, hab. session 21.11.42.2-0.9-1.11.5
Total locomotion distance, hab. session 20.40.61.60.1-0.11.3
Locomotion velocity, hab. session 20.30.41.10.40.21.0
Novel to familiar place preference ratio4.24.44.72.02.2-2.1
Novelty place preference4.24.34.71.92.1-2.2
Time in novel zone, NPP test3.23.33.61.71.9-1.9
Total zone transitions, NPP test1.92.74.4-1.2-1.42.1
Total locomotion distance, NPP test1.01.43.5-0.4-0.61.9
Locomotion velocity, NPP test0.50.72.0-0.1-0.31.4
Intraocular pressure0.20.30.50.70.7-0.4
Delta distance traveled before/after self-admin1.21.32.2-0.9-0.91.5
Delta ambulatory time before/after self-admin2.32.63.5-1.4-1.51.9
Parametrial fat weight1.63.04.02.01.9-1.2
Pavlov. Cond. lever latency2.12.63.4-1.5-1.51.9
Pavlov. Cond. magazine entry latency4.15.36.32.12.3-2.5
Pavlov. Cond. change in total contacts1.11.22.00.81.0-1.4
Pavlov. Cond. index score4.45.65.92.42.4-2.3
Pavlov. Cond. latency score3.94.95.02.22.2-2.2
Pavlov. Cond. lever contacts1.31.51.61.31.2-1.2
Pavlov. Cond. magazine entry number4.45.57.7-2.0-2.22.8
Pavlov. Cond. intertrial magazine entries0.10.20.50.20.10.7
Pavlov. Cond. lever-magazine prob. diff.4.75.96.12.52.5-2.3
Pavlov. Cond. response bias3.94.76.02.02.1-2.5
Pavlov. Cond. lever latency0.10.20.3-0.5-0.5-0.3
Pavlov. Cond. magazine entry latency2.63.03.1-1.8-1.71.8
Pavlov. Cond. change in total contacts0.50.71.1-0.7-0.61.1
Pavlov. Cond. index score0.40.50.8-0.7-0.50.9
Pavlov. Cond. latency score0.40.51.0-0.6-0.51.0
Pavlov. Cond. lever contacts0.20.30.40.60.60.3
Pavlov. Cond. magazine entry number2.02.53.01.51.4-1.7
Pavlov. Cond. intertrial magazine entries1.31.72.41.51.4-0.9
Pavlov. Cond. lever-magazine prob. diff.0.60.71.0-0.8-0.71.0
Pavlov. Cond. response bias0.10.20.5-0.2-0.10.7
Time in closed arm before self-admin0.20.30.8-0.3-0.1-0.9
Time in closed arm after self-admin0.30.30.6-0.4-0.4-0.8
Time in open arm before self-admin0.30.41.0-0.1-0.41.0
Time in open arm after self-admin0.40.40.9-0.4-0.51.0
Bone: periosteal estimation1.63.44.82.22.1-1.0
Bone: periosteal perimeter4.37.18.12.92.8-2.3
Bone: post-yield work0.20.30.5-0.3-0.40.7
Progressive ratio test 1 active lever presses0.80.81.31.11.0-0.5
Progressive ratio test 1 breakpoint1.11.11.71.31.2-0.7
Progressive ratio test 1 inactive lever presses2.02.13.01.71.7-0.8
Progressive ratio test 2 active lever presses0.40.40.60.70.7-0.5
Progressive ratio test 2 breakpoint0.30.30.60.80.6-0.2
Progressive ratio test 2 inactive lever presses0.60.70.70.80.9-0.7
Incentive Sensitization - Responses0.10.10.20.40.4-0.3
Incentive Sensitization - Breakpoint0.10.10.10.40.3-0.4
Sum of active levers in priming session hrs 5-61.41.42.20.71.2-1.5
Progressive ratio0.30.40.5-0.7-0.60.5
Food seeking constrained by brief footshock0.10.10.1-0.3-0.1-0.3
Seeking ratio, punishment vs. effort0.10.10.10.40.3-0.2
Retroperitoneal fat weight3.812.517.24.14.1-2.0
Reaction time number correct1.62.25.6-0.6-0.92.4
Reaction time mean minus median0.00.10.10.00.1-0.4
Reaction time mean minus median AUC0.00.10.10.30.1-0.2
Reaction time num false alarms0.20.30.4-0.6-0.50.4
Reaction time num false alarms AUC0.70.91.1-1.0-1.00.8
Reaction time trials correct on left1.62.25.6-0.6-0.92.4
Reaction time trials on left1.62.35.8-0.6-0.92.4
Reaction time mean0.10.20.30.50.5-0.2
Reaction time mean AUC0.10.10.10.40.30.3
Median of all reaction times0.10.10.20.40.40.0
Reaction time omissions0.10.20.40.30.30.6
Reaction time false alarm rate0.20.30.4-0.6-0.4-0.5
Reaction time premature initiation rate1.11.52.2-1.5-1.30.8
Reaction time premature initiations2.23.03.9-1.6-1.62.0
Std. dev. reaction times0.30.40.4-0.7-0.70.5
Reaction time trials completed1.62.35.8-0.6-0.92.4
Reaction time trials AUC1.52.25.5-0.6-0.82.3
Run reversals in cocaine runway, females1.61.51.8-1.2-1.21.3
Run reversals in cocaine runway, males2.72.63.41.41.5-1.8
Latency to leave start box in cocaine runway0.40.50.5-0.7-0.70.7
Latency to leave start box in cocaine runway, F1.01.11.8-0.7-0.91.3
Latency to leave start box in cocaine runway, M0.10.10.30.20.2-0.6
Std. dev. time between licks in bursts0.50.61.90.2-0.11.4
Total sessions with >9 infusions0.30.40.4-0.5-0.70.7
Short access day 1 total inactive lever presses0.50.51.4-0.1-0.41.2
Short access day 10 total inactive lever presses3.74.14.72.12.2-1.8
Short access day 1 total infusions1.41.51.8-1.3-1.31.0
Short access day 10 total infusions0.70.80.90.90.9-0.8
Short access total infusions0.00.00.0-0.0-0.1-0.0
Short access day 1 locomotion0.10.10.2-0.4-0.40.0
Short access day 10 total locomotion0.20.20.50.10.2-0.7
Short access total locomotion0.10.10.2-0.4-0.4-0.1
One hour access (0.3 mA shock)0.91.01.51.21.1-0.5
Compulsive drug intake0.20.20.40.60.6-0.2
One hour access (shock baseline)0.10.10.20.40.20.3
Social response proportion0.60.60.6-0.8-0.80.8
Social responses0.20.30.6-0.3-0.40.8
Social time0.20.20.3-0.4-0.40.6
Soleus weight1.03.14.52.11.9-1.0
Bone: stiffness0.50.81.21.11.0-0.5
Tibialis anterior weight0.00.10.3-0.0-0.20.5
Time to tail flick, vehicle, before self-admin0.00.00.00.20.10.1
Time to tail flick, vehicle, after self-admin2.32.53.1-1.6-1.81.4
Time to tail flick, test, before self-admin0.20.20.30.30.3-0.6
Time to tail flick, test, after self-admin0.10.10.1-0.4-0.40.4
Delta time to tail flick, vehicle, before/after SA0.70.71.1-0.7-0.81.1
Delta time to tail flick, test, before/after SA0.20.20.3-0.6-0.50.1
Tibia length11.031.034.75.95.8-5.0
Ambulatory time before self-admin3.94.14.41.92.1-2.1
Ambulatory time after self-admin0.20.20.30.50.6-0.2
Bone: tissue strength0.70.71.21.11.0-0.1
Total heroin consumption0.60.71.30.40.7-1.2
Bone: trabecular number0.00.00.00.1-0.00.1
Bone: trabecular spacing0.60.72.1-0.1-0.21.5
Bone: trabecular thickness1.62.03.41.01.2-1.8
Bone: trabecular tissue density0.71.01.3-1.2-1.20.7
Water consumed over 24 hours0.20.20.50.20.3-0.7
Number of responses in last shaping day0.80.81.31.21.0-0.3