LOC120095308

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Liver gene expression LOC120095308 0.95 0.02 0.0e+00 0.56 0.58 0.58 0.57 3.6e-74 7.4e-79 5.5e-78 1.2e-77
2 Adipose gene expression LOC120095308 0.39 0.34 0.0e+00 0.22 0.23 0.22 0.22 8.6e-24 3.9e-25 3.3e-24 1.8e-24
3 LHb gene expression LOC120095308 0.19 0.13 7.9e-03 0.09 0.02 0.05 0.05 3.8e-03 1.2e-01 2.7e-02 2.7e-02
4 Brain gene expression LOC120095308 0.08 0.05 2.9e-04 0.04 0.04 0.04 0.04 2.2e-04 1.8e-04 2.1e-04 2.7e-04

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density0.00.10.1-0.00.1-0.30.3
Area under the delay curve0.80.81.31.11.1-0.60.6
BMI with tail0.10.20.50.10.2-0.70.3
BMI without tail0.30.51.00.10.3-1.01.0
Body weight1.46.08.9-3.0-2.82.3-1.5
Weight adjusted by age1.71.92.3-1.4-1.41.5-1.2
Bone surface0.30.50.7-0.9-0.80.7-0.3
Bone volume0.10.10.2-0.5-0.40.2-0.1
Breakpoint value in progressive ratio session0.70.72.1-0.6-0.6-0.2-1.5
Number of licking bursts0.10.10.3-0.1-0.10.30.6
Context. condit. distance diff. score1.41.72.61.11.1-1.31.6
Locomotion velocity, session 10.10.10.30.10.10.3-0.6
Locomotion distance, session 13.03.94.82.22.1-1.71.8
Locomotion velocity, session 20.91.01.71.31.1-0.70.7
Locomotion distance, session 21.21.71.91.41.3-1.21.4
Locomotion velocity, session 30.10.10.20.50.4-0.1-0.1
Locomotion distance, session 31.31.52.01.41.3-1.20.7
Stereotopy head waving bouts, day 30.00.00.10.0-0.00.2-0.3
Stereotopy head waving duration, day 30.00.00.00.20.1-0.1-0.0
Locomotion velocity, session 70.60.70.90.90.9-1.00.6
Locomotion distance, session 75.67.17.92.82.7-2.82.3
Stereotopy head waving bouts, day 70.00.00.0-0.2-0.10.0-0.1
Stereotopy head waving duration, day 70.50.60.9-0.9-0.80.9-0.5
Locomotion velocity, session 82.12.52.81.61.6-1.51.7
Locomotion distance, session 83.75.57.42.22.2-2.32.7
Degree of sensitization distance0.40.40.60.50.5-0.80.7
Degree of sensitization stereotypy0.00.00.0-0.2-0.1-0.0-0.1
Conditioned locomotion0.30.30.7-0.8-0.70.30.1
Cocaine response after cond. corrected0.10.10.50.00.0-0.3-0.7
Cocaine response after cond. not corrected0.10.10.10.40.4-0.3-0.3
Cocaine response before conditioning0.50.61.20.80.7-0.21.1
Saline control response1.41.92.6-1.6-1.51.4-0.8
Bone: connectivity density0.30.51.20.50.5-0.61.1
Bone: cortical apparent density0.91.21.71.31.2-1.10.4
Bone: cortical area4.77.19.3-3.1-2.92.6-2.1
Bone: cortical porosity5.05.47.5-2.3-2.32.0-2.7
Bone: cortical porosity3.94.35.8-2.1-2.01.6-2.4
Bone: cortical thickness5.69.211.3-3.4-3.22.7-2.8
Bone: cortical thickness1.41.62.0-1.4-1.31.0-1.3
Bone: cortical tissue density1.01.32.01.41.3-1.20.5
Condit. Reinf. active minus inactive responses0.40.50.8-0.9-0.80.6-0.5
Condit. Reinf. active-inactive response ratio0.10.10.2-0.5-0.4-0.0-0.4
Condit. Reinf. active responses0.91.11.7-1.3-1.21.1-0.5
Condit. Reinf. inactive responses0.20.30.4-0.6-0.60.6-0.2
Incentive salience index mean0.40.50.7-0.9-0.80.7-0.3
Condit. Reinf. lever presses0.10.20.50.30.3-0.10.7
Condit. Reinf. active minus inactive responses0.20.20.3-0.5-0.50.5-0.1
Condit. Reinf. active-inactive response ratio1.92.02.4-1.5-1.51.4-1.1
Condit. Reinf. active responses0.10.20.30.40.4-0.60.4
Condit. Reinf. inactive responses1.51.82.41.41.4-1.60.9
Condit. Reinf. lever presses0.70.92.00.80.8-1.40.6
Condit. Reinf. lever reinforcers received0.50.71.50.80.8-1.20.6
Conditioned reinforcement - actives0.10.10.50.20.10.20.7
Conditioned reinforcement - inactives1.11.21.4-1.2-1.21.1-0.9
Conditioned locomotion0.30.30.7-0.5-0.60.90.1
Patch foraging indifference point 0 sec0.00.10.1-0.2-0.1-0.2-0.3
Patch foraging indifference point AUC0.10.10.10.40.3-0.20.2
Delay disc. indifference point, 0s delay0.00.00.00.10.00.20.1
Delay disc. indifference point, 16s delay3.63.64.12.02.0-1.81.8
Delay disc. indifference point, 2s delay0.00.00.00.20.10.1-0.1
Delay disc. indifference point, 24s delay0.70.71.41.21.1-0.40.3
Delay disc. indifference point, 4s delay0.10.10.20.40.3-0.4-0.0
Delay disc. indifference point, 8s delay0.10.10.20.20.20.5-0.2
Indifference point function ln k0.71.01.61.01.0-1.30.7
Indifference point function log k0.71.01.61.01.0-1.30.7
Patch foraging total patch changes 0 sec0.10.10.40.10.1-0.6-0.2
Patch foraging total patch changes 12 sec0.10.10.3-0.2-0.20.1-0.5
Patch foraging total patch changes 18 sec1.31.62.61.21.3-1.60.9
Patch foraging total patch changes 24 sec0.10.10.1-0.4-0.30.3-0.3
Patch foraging total patch changes 6 sec0.71.01.1-1.1-1.01.0-1.0
Patch foraging time to switch 0 sec0.00.10.10.30.3-0.10.2
Patch foraging water rate 0 sec0.10.10.2-0.4-0.4-0.1-0.2
Patch foraging water rate 12 sec1.01.52.91.01.0-1.70.9
Patch foraging water rate 18 sec0.30.50.80.40.5-0.90.8
Patch foraging water rate 24 sec1.01.43.30.80.9-1.81.0
Patch foraging water rate 6 sec0.30.40.70.50.5-0.80.7
Seeking ratio, delayed vs. immediate footshock0.80.91.8-0.9-0.91.4-0.4
Distance traveled before self-admin1.51.62.5-1.3-1.20.8-1.6
Distance traveled after self-admin0.30.31.10.30.4-1.00.2
Extensor digitorum longus weight0.72.93.51.61.6-1.91.7
Bone: elastic displacement1.41.61.9-1.4-1.30.9-1.4
Bone: elastic work8.811.313.1-3.6-3.52.8-3.5
Bone: endosteal estimation0.51.01.41.01.0-0.91.2
Bone: endosteal perimeter0.61.21.7-1.2-1.11.3-0.6
Epididymis fat weight0.00.10.3-0.5-0.40.10.2
Delta time in closed arm before/after self-admin0.40.30.7-0.4-0.50.90.5
Delta time in open arm before/after self-admin0.40.40.50.70.7-0.70.3
Diff in mean of infusions in LGA sessions0.00.00.00.10.1-0.1-0.2
Delay discount exponential model param0.70.81.3-1.2-1.10.6-0.5
Extinction: sum of active levers before priming0.60.61.80.70.6-1.3-0.1
Active lever presses in extinction session 60.40.41.4-0.2-0.3-0.2-1.2
Bone: final force3.04.86.6-2.6-2.41.9-1.8
Bone: final moment3.86.18.3-2.9-2.72.1-2.2
Food consumed during 24 hour testing period0.10.10.1-0.4-0.3-0.3-0.3
Glucose0.60.93.6-0.1-0.2-0.0-1.9
Heart weight0.10.10.2-0.4-0.30.3-0.4
Delay discount hyperbolic model param0.70.81.3-1.1-1.00.6-0.5
Intermittent access intake day 1-15 change0.40.40.5-0.7-0.60.2-0.7
Intermittent access intake escalation0.20.20.2-0.5-0.50.2-0.4
Intermittent access intake escalation 22.32.32.7-1.6-1.61.0-1.7
Intermitt. access day 1 inactive lever presses1.01.11.4-1.1-0.91.0-1.2
Intermitt. access day 15 inactive lever presses0.10.10.2-0.4-0.4-0.00.1
Intermitt. access escalation Index0.30.20.6-0.2-0.10.60.7
Intermittent access day 1 total infusions0.10.10.1-0.2-0.20.4-0.0
Intermittent access day 15 total infusions0.10.20.3-0.4-0.40.5-0.1
Intermittent access terminal intake (last 3 days)0.70.71.0-0.9-1.01.0-0.5
Intermittent access total infusions0.10.10.3-0.4-0.40.5-0.1
Intermittent access day 1 locomotion0.10.10.2-0.3-0.30.50.2
Intermittent access day 15 total locomotion0.70.81.0-0.9-1.01.0-0.6
Intermittent access total locomotion0.30.40.5-0.7-0.70.7-0.3
Intermittent access standard deviation0.60.61.7-0.5-0.60.2-1.3
Left kidney weight0.82.34.1-1.4-1.42.0-1.0
Right kidney weight0.30.81.9-0.8-0.81.4-0.2
Cocaine induced anxiety5.56.48.9-2.6-2.52.0-3.0
Post-drug Anxiety1.01.12.6-1.0-0.90.0-1.6
Baseline Anxiety5.25.56.32.52.4-2.22.2
Tail length1.13.55.0-2.2-2.12.1-0.5
Length with tail2.810.112.5-3.5-3.43.5-2.0
Length without tail2.55.56.8-2.2-2.42.6-2.1
Times rat made contact with spout2.63.04.1-1.8-1.81.2-2.0
Lifetime Intake0.10.10.2-0.2-0.30.40.1
Liver weight, left0.50.81.4-0.8-0.80.9-1.2
Liver weight, right2.74.56.8-2.2-2.22.6-1.0
Locomotor activity0.20.40.60.70.6-0.80.3
Locomotor testing distance0.61.01.31.11.1-1.00.9
Locomotor testing rearing0.71.11.61.11.0-1.30.7
Locomotion in novel chamber0.50.60.80.80.8-0.40.9
Locomotion in novel chamber post-restriction1.11.31.7-1.3-1.21.2-0.8
Fecal boli incidents, locomotor time 10.40.40.60.80.7-0.50.7
Change in fecal boli incidents, locomotor task0.30.30.70.20.1-0.7-0.8
Time >=10cm from walls, locomotor time 10.90.91.70.50.5-1.31.2
Bouts of movement, locomotor time 10.70.71.01.01.0-0.90.5
Total resting periods, locomotor time 10.40.40.60.80.8-0.70.2
Rest time, locomotor task time 10.30.30.4-0.4-0.40.6-0.7
Distance moved, locomotor task time 10.00.00.1-0.1-0.10.20.3
Vertical activity count, locomotor time 10.30.30.60.00.1-0.60.8
Time >=10cm from walls, locomotor time 20.10.10.2-0.3-0.40.50.3
Bouts of movement, locomotor time 21.11.21.41.11.2-1.10.9
Total resting periods, locomotor time 21.11.21.31.11.1-1.01.2
Rest time, locomotor task time 20.00.00.0-0.1-0.10.10.1
Distance moved, locomotor task time 20.10.10.3-0.1-0.20.60.2
Vertical activity count, locomotor time 20.40.41.10.50.5-0.51.0
Light reinforcement 10.10.20.80.10.2-0.20.9
Light reinforcement 20.50.61.0-1.0-0.90.90.1
Bone: marrow area0.51.11.41.01.0-0.91.2
Bone: maximum diameter1.52.73.6-1.8-1.71.9-0.9
Bone: maximum force2.54.46.0-2.5-2.32.0-1.5
Bone: maximum moment3.25.67.5-2.7-2.62.1-1.9
Mean time between licks in bursts0.91.21.61.31.3-0.81.0
Mean num. licks in bursts0.70.92.2-0.8-0.80.2-1.5
Cd content in liver2.32.63.31.81.7-1.71.0
Co content in liver0.20.30.60.50.5-0.80.2
Cu content in liver2.02.43.2-1.6-1.61.0-1.8
Fe content in liver0.70.81.01.01.0-0.80.8
K content in liver0.50.50.9-0.8-0.70.90.2
Mg content in liver0.90.92.40.70.7-0.51.5
Mn content in liver0.50.50.7-0.8-0.80.8-0.4
Na content in liver0.20.20.3-0.4-0.40.6-0.1
Rb content in liver0.10.10.30.10.1-0.50.6
Se content in liver0.00.00.0-0.2-0.2-0.1-0.0
Sr content in liver1.31.22.3-1.0-1.00.7-1.5
Zn content in liver0.60.71.4-0.8-0.81.2-0.3
Bone: minimum diameter2.44.45.9-2.4-2.31.8-1.8
Time in familiar zone, hab. session 10.10.10.20.10.1-0.4-0.5
Time in novel zone, hab. session 10.00.00.20.10.10.00.4
Total zone transitions, hab. session 10.91.31.51.21.2-1.20.8
Total locomotion distance, hab. session 10.50.71.10.80.9-1.10.7
Locomotion velocity, hab. session 10.40.60.70.70.8-0.90.7
Time in familiar zone, hab. session 20.70.81.00.90.9-1.00.5
Time in novel zone, hab. session 20.00.00.0-0.1-0.10.20.2
Total zone transitions, hab. session 22.73.54.01.91.9-1.72.0
Total locomotion distance, hab. session 21.31.73.01.11.2-1.01.7
Locomotion velocity, hab. session 20.81.12.30.80.9-0.81.5
Novel to familiar place preference ratio2.62.74.0-1.8-1.80.6-2.0
Novelty place preference2.72.84.1-1.8-1.80.6-2.0
Time in novel zone, NPP test1.91.93.0-1.5-1.50.4-1.7
Total zone transitions, NPP test3.44.86.22.22.2-1.82.5
Total locomotion distance, NPP test2.73.75.51.81.8-1.72.4
Locomotion velocity, NPP test1.62.23.41.31.4-1.41.8
Intraocular pressure0.00.10.20.00.0-0.50.1
Delta distance traveled before/after self-admin2.22.32.91.51.5-1.71.4
Delta ambulatory time before/after self-admin2.62.93.21.71.6-1.81.6
Parametrial fat weight0.91.82.4-1.6-1.51.4-0.9
Pavlov. Cond. lever latency5.06.48.32.52.5-2.92.1
Pavlov. Cond. magazine entry latency4.45.75.9-2.4-2.32.3-2.4
Pavlov. Cond. change in total contacts1.92.03.5-1.4-1.40.9-1.9
Pavlov. Cond. index score5.36.77.7-2.7-2.72.8-2.2
Pavlov. Cond. latency score5.87.48.8-2.8-2.83.0-2.3
Pavlov. Cond. lever contacts2.73.24.5-1.8-1.82.1-1.3
Pavlov. Cond. magazine entry number5.36.67.72.62.5-2.42.8
Pavlov. Cond. intertrial magazine entries0.40.50.80.60.6-0.80.9
Pavlov. Cond. lever-magazine prob. diff.5.26.57.2-2.7-2.62.6-2.2
Pavlov. Cond. response bias5.06.16.3-2.5-2.52.5-2.4
Pavlov. Cond. lever latency0.60.81.4-0.8-0.81.2-0.8
Pavlov. Cond. magazine entry latency4.45.16.22.42.3-2.51.8
Pavlov. Cond. change in total contacts2.12.94.41.71.7-2.11.3
Pavlov. Cond. index score2.22.84.41.61.6-2.11.1
Pavlov. Cond. latency score2.22.74.01.61.6-2.01.2
Pavlov. Cond. lever contacts0.60.91.40.70.8-1.20.9
Pavlov. Cond. magazine entry number4.15.06.7-2.3-2.22.6-1.7
Pavlov. Cond. intertrial magazine entries0.70.81.1-1.0-1.01.1-0.4
Pavlov. Cond. lever-magazine prob. diff.2.53.25.01.81.8-2.21.2
Pavlov. Cond. response bias1.42.03.11.31.3-1.71.1
Time in closed arm before self-admin0.10.20.6-0.2-0.0-0.1-0.8
Time in closed arm after self-admin0.80.81.1-0.9-0.80.8-1.1
Time in open arm before self-admin0.20.20.5-0.1-0.30.50.7
Time in open arm after self-admin0.50.60.80.80.7-0.50.9
Bone: periosteal estimation0.71.42.2-1.5-1.31.2-0.7
Bone: periosteal perimeter5.08.39.7-3.1-3.03.0-2.4
Bone: post-yield work0.50.61.00.80.8-0.61.0
Progressive ratio test 1 active lever presses0.20.20.4-0.7-0.60.4-0.1
Progressive ratio test 1 breakpoint0.30.30.5-0.7-0.60.4-0.2
Progressive ratio test 1 inactive lever presses0.40.40.7-0.8-0.70.7-0.3
Progressive ratio test 2 active lever presses0.30.40.5-0.7-0.70.7-0.4
Progressive ratio test 2 breakpoint0.20.20.3-0.5-0.50.5-0.1
Progressive ratio test 2 inactive lever presses0.50.60.7-0.7-0.80.8-0.7
Incentive Sensitization - Responses0.10.10.2-0.4-0.40.4-0.3
Incentive Sensitization - Breakpoint0.20.20.2-0.4-0.40.5-0.3
Sum of active levers in priming session hrs 5-60.60.61.9-0.3-0.2-0.6-1.4
Progressive ratio0.20.20.30.50.4-0.50.1
Food seeking constrained by brief footshock0.10.10.5-0.0-0.1-0.3-0.7
Seeking ratio, punishment vs. effort0.00.00.0-0.10.0-0.0-0.0
Retroperitoneal fat weight1.34.16.6-2.6-2.31.6-1.4
Reaction time number correct5.47.89.92.62.7-2.73.2
Reaction time mean minus median0.40.60.6-0.8-0.80.8-0.7
Reaction time mean minus median AUC0.40.51.2-0.7-0.71.1-0.2
Reaction time num false alarms0.10.20.30.50.5-0.40.2
Reaction time num false alarms AUC0.40.60.70.80.8-0.70.6
Reaction time trials correct on left5.47.89.92.62.7-2.73.2
Reaction time trials on left5.68.010.32.72.7-2.73.2
Reaction time mean0.00.10.2-0.1-0.0-0.50.1
Reaction time mean AUC0.10.20.40.20.2-0.60.5
Median of all reaction times0.20.20.70.30.3-0.80.4
Reaction time omissions0.00.00.2-0.00.00.00.4
Reaction time false alarm rate0.40.51.0-0.5-0.50.7-1.0
Reaction time premature initiation rate0.60.91.21.11.0-1.00.4
Reaction time premature initiations3.75.35.82.42.4-2.42.0
Std. dev. reaction times0.20.30.40.60.5-0.70.5
Reaction time trials completed5.68.010.32.72.7-2.73.2
Reaction time trials AUC5.47.810.02.62.6-2.73.2
Run reversals in cocaine runway, females2.92.83.21.71.7-1.81.4
Run reversals in cocaine runway, males3.02.93.2-1.8-1.81.5-1.7
Latency to leave start box in cocaine runway0.50.50.60.70.7-0.80.7
Latency to leave start box in cocaine runway, F1.11.21.81.01.0-0.91.4
Latency to leave start box in cocaine runway, M0.10.10.2-0.3-0.20.0-0.4
Std. dev. time between licks in bursts1.92.34.31.21.4-1.32.1
Total sessions with >9 infusions0.10.10.40.20.1-0.20.6
Short access day 1 total inactive lever presses0.40.41.20.30.20.71.1
Short access day 10 total inactive lever presses1.71.92.3-1.5-1.41.2-1.3
Short access day 1 total infusions0.40.40.60.80.7-0.50.6
Short access day 10 total infusions0.50.50.7-0.8-0.70.8-0.6
Short access total infusions0.00.00.0-0.0-0.00.00.1
Short access day 1 locomotion0.20.20.6-0.3-0.40.7-0.3
Short access day 10 total locomotion0.60.70.9-0.8-0.90.8-0.9
Short access total locomotion0.30.30.6-0.4-0.50.8-0.4
One hour access (0.3 mA shock)0.10.10.3-0.5-0.50.0-0.1
Compulsive drug intake0.00.00.1-0.10.1-0.20.0
One hour access (shock baseline)0.20.20.5-0.3-0.40.70.4
Social response proportion0.80.91.21.00.9-1.10.8
Social responses0.20.20.30.40.4-0.50.6
Social time0.40.50.90.60.6-0.90.6
Soleus weight0.61.82.7-1.5-1.41.6-0.5
Bone: stiffness0.20.40.6-0.7-0.60.8-0.1
Tibialis anterior weight0.10.40.90.50.5-0.41.0
Time to tail flick, vehicle, before self-admin0.00.00.1-0.1-0.00.30.2
Time to tail flick, vehicle, after self-admin0.60.61.00.90.80.11.0
Time to tail flick, test, before self-admin0.30.30.4-0.5-0.60.3-0.6
Time to tail flick, test, after self-admin0.00.00.0-0.0-0.2-0.10.0
Delta time to tail flick, vehicle, before/after SA0.50.50.80.80.6-0.50.9
Delta time to tail flick, test, before/after SA0.10.10.20.20.1-0.5-0.1
Tibia length9.326.132.0-5.7-5.45.0-4.3
Ambulatory time before self-admin2.02.12.7-1.6-1.41.0-1.6
Ambulatory time after self-admin0.10.20.60.10.1-0.80.0
Bone: tissue strength0.10.10.1-0.3-0.30.10.2
Total heroin consumption0.60.71.8-0.7-0.70.2-1.3
Bone: trabecular number0.00.00.0-0.1-0.1-0.00.2
Bone: trabecular spacing2.32.93.41.61.7-1.71.8
Bone: trabecular thickness2.53.04.1-1.7-1.71.4-2.0
Bone: trabecular tissue density0.30.40.70.80.8-0.10.5
Water consumed over 24 hours0.60.71.0-0.8-0.80.6-1.0
Number of responses in last shaping day1.01.02.2-1.0-1.01.5-0.1