LOC120095200

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Liver gene expression LOC120095200 0.28 0.09 0.0e+00 0.24 0.28 0.26 0.28 1.6e-26 3.9e-31 3.2e-29 1.6e-30
2 Liver alternative polyA XR_005490497.2 0.34 0.11 0.0e+00 0.24 0.3 0.28 0.28 4.1e-26 4.9e-33 8.0e-31 9.5e-31
3 Liver alternative polyA XR_005490494.2 0.29 0.14 7.4e-07 0.06 0.05 0.03 0.05 6.5e-07 1.3e-06 4.8e-04 2.7e-06
4 pVTA alternative polyA XR_005490497.2 0.3 0.12 1.7e-04 0.06 0.05 0.05 0.05 2.7e-05 4.6e-05 1.2e-04 3.9e-05

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density0.51.03.5-0.50.5-1.9-0.3
Area under the delay curve0.10.10.2-0.50.5-0.20.2
BMI with tail0.93.33.9-1.92.01.91.4
BMI without tail0.84.25.7-2.32.42.30.9
Body weight3.415.022.6-4.84.71.33.7
Weight adjusted by age0.41.35.0-0.10.22.20.2
Bone surface2.44.89.7-2.12.1-3.10.7
Bone volume2.85.610.6-2.32.4-3.30.9
Breakpoint value in progressive ratio session1.12.02.41.4-1.31.6-1.4
Number of licking bursts0.20.61.5-0.70.6-0.21.2
Context. condit. distance diff. score0.10.10.2-0.40.4-0.10.4
Locomotion velocity, session 10.10.20.6-0.20.2-0.1-0.7
Locomotion distance, session 10.40.51.9-0.20.3-0.3-1.4
Locomotion velocity, session 20.60.82.20.3-0.2-0.8-1.5
Locomotion distance, session 21.11.65.80.5-0.4-0.4-2.4
Locomotion velocity, session 31.92.26.70.9-0.80.7-2.6
Locomotion distance, session 30.20.20.5-0.30.3-0.4-0.7
Stereotopy head waving bouts, day 35.76.89.53.1-3.01.1-2.7
Stereotopy head waving duration, day 32.63.24.62.1-2.10.5-1.8
Locomotion velocity, session 70.10.10.20.3-0.3-0.1-0.4
Locomotion distance, session 71.21.52.1-1.21.3-1.50.9
Stereotopy head waving bouts, day 73.03.54.22.0-2.01.6-1.9
Stereotopy head waving duration, day 74.85.97.72.8-2.72.0-2.1
Locomotion velocity, session 80.00.00.0-0.10.1-0.10.2
Locomotion distance, session 80.50.71.8-0.30.5-0.9-1.4
Degree of sensitization distance0.80.91.5-0.80.8-1.21.0
Degree of sensitization stereotypy1.82.02.81.3-1.21.7-1.4
Conditioned locomotion0.20.20.8-0.10.2-0.9-0.3
Cocaine response after cond. corrected0.60.91.8-0.80.8-0.81.3
Cocaine response after cond. not corrected0.91.32.9-1.00.9-0.81.7
Cocaine response before conditioning0.00.00.00.0-0.0-0.1-0.0
Saline control response0.60.82.1-0.40.51.4-0.7
Bone: connectivity density1.01.63.20.6-0.5-1.6-1.8
Bone: cortical apparent density3.04.76.12.5-2.41.7-2.0
Bone: cortical area1.22.03.2-1.41.6-1.8-0.6
Bone: cortical porosity2.83.14.8-2.12.2-1.70.4
Bone: cortical porosity3.23.66.2-2.42.5-1.40.6
Bone: cortical thickness3.35.510.32.1-1.92.0-3.2
Bone: cortical thickness3.84.710.82.0-1.90.8-3.3
Bone: cortical tissue density3.04.86.12.5-2.41.8-2.0
Condit. Reinf. active minus inactive responses4.04.55.8-2.42.4-2.11.6
Condit. Reinf. active-inactive response ratio1.31.43.0-1.00.9-0.91.7
Condit. Reinf. active responses3.74.86.3-2.52.5-2.40.9
Condit. Reinf. inactive responses1.21.62.3-1.21.3-1.5-0.9
Incentive salience index mean1.51.92.6-1.61.6-1.40.7
Condit. Reinf. lever presses0.10.10.5-0.00.00.3-0.7
Condit. Reinf. active minus inactive responses3.75.88.0-2.72.7-2.80.6
Condit. Reinf. active-inactive response ratio2.94.65.6-2.42.3-2.41.3
Condit. Reinf. active responses5.57.910.8-3.13.2-3.30.9
Condit. Reinf. inactive responses1.01.52.8-1.01.2-1.7-0.8
Condit. Reinf. lever presses2.33.35.1-2.22.3-1.70.4
Condit. Reinf. lever reinforcers received5.37.59.9-3.03.1-3.11.1
Conditioned reinforcement - actives0.10.31.0-0.40.3-1.0-0.3
Conditioned reinforcement - inactives0.30.71.1-1.10.9-0.60.6
Conditioned locomotion2.13.25.0-2.22.2-1.31.1
Patch foraging indifference point 0 sec1.64.67.6-2.72.8-1.90.1
Patch foraging indifference point AUC0.30.81.1-1.11.0-0.60.8
Delay disc. indifference point, 0s delay0.10.10.30.2-0.20.60.2
Delay disc. indifference point, 16s delay0.40.51.2-0.60.60.21.1
Delay disc. indifference point, 2s delay0.10.10.2-0.30.4-0.3-0.2
Delay disc. indifference point, 24s delay0.81.31.7-1.31.3-1.00.7
Delay disc. indifference point, 4s delay0.00.00.10.10.00.0-0.3
Delay disc. indifference point, 8s delay0.30.50.70.8-0.80.9-0.4
Indifference point function ln k0.51.53.80.8-0.6-1.1-1.9
Indifference point function log k0.51.53.80.8-0.6-1.1-1.9
Patch foraging total patch changes 0 sec1.33.76.2-2.42.5-1.6-0.1
Patch foraging total patch changes 12 sec2.83.75.6-2.42.3-1.71.0
Patch foraging total patch changes 18 sec0.41.02.0-1.41.4-0.4-0.0
Patch foraging total patch changes 24 sec1.24.16.0-2.42.4-2.1-0.1
Patch foraging total patch changes 6 sec4.98.313.2-3.63.6-2.21.5
Patch foraging time to switch 0 sec0.20.61.30.0-0.11.01.1
Patch foraging water rate 0 sec0.41.62.3-1.31.4-1.5-0.3
Patch foraging water rate 12 sec0.00.20.5-0.10.10.2-0.7
Patch foraging water rate 18 sec0.41.03.00.6-0.5-0.4-1.7
Patch foraging water rate 24 sec0.60.92.60.6-0.5-0.6-1.6
Patch foraging water rate 6 sec0.81.13.30.8-0.7-0.1-1.8
Seeking ratio, delayed vs. immediate footshock0.60.81.1-1.01.00.41.0
Distance traveled before self-admin0.30.71.00.7-0.60.9-1.0
Distance traveled after self-admin0.10.10.2-0.30.5-0.00.3
Extensor digitorum longus weight1.24.915.70.7-0.94.01.7
Bone: elastic displacement1.72.24.71.3-1.21.0-2.2
Bone: elastic work0.50.71.80.2-0.20.9-1.3
Bone: endosteal estimation12.731.037.3-6.16.0-5.54.6
Bone: endosteal perimeter13.633.339.8-6.36.2-5.94.5
Epididymis fat weight1.05.18.5-1.41.32.92.9
Delta time in closed arm before/after self-admin0.20.20.50.3-0.4-0.70.2
Delta time in open arm before/after self-admin0.91.01.91.0-1.00.1-1.4
Diff in mean of infusions in LGA sessions0.71.22.71.0-1.01.7-0.5
Delay discount exponential model param0.30.40.60.7-0.80.5-0.5
Extinction: sum of active levers before priming0.20.30.4-0.50.60.40.6
Active lever presses in extinction session 60.00.00.1-0.10.20.0-0.4
Bone: final force0.61.01.8-1.01.0-1.3-0.2
Bone: final moment0.61.02.0-0.91.0-1.4-0.3
Food consumed during 24 hour testing period0.51.12.60.6-0.51.6-1.1
Glucose0.00.00.10.1-0.00.30.3
Heart weight0.91.42.9-1.61.7-0.20.3
Delay discount hyperbolic model param0.30.30.50.7-0.70.4-0.5
Intermittent access intake day 1-15 change0.63.49.5-1.51.3-0.13.1
Intermittent access intake escalation0.63.07.8-1.61.4-0.12.8
Intermittent access intake escalation 22.23.78.8-1.81.6-0.73.0
Intermitt. access day 1 inactive lever presses0.10.91.4-1.21.1-0.21.0
Intermitt. access day 15 inactive lever presses0.31.33.5-0.70.51.11.9
Intermitt. access escalation Index0.10.30.60.5-0.40.7-0.2
Intermittent access day 1 total infusions0.20.51.5-0.40.4-0.5-1.2
Intermittent access day 15 total infusions0.92.23.6-1.91.8-0.51.4
Intermittent access terminal intake (last 3 days)1.93.45.0-2.22.1-1.11.8
Intermittent access total infusions1.11.32.2-1.51.3-1.00.4
Intermittent access day 1 locomotion1.12.03.7-1.91.8-0.70.6
Intermittent access day 15 total locomotion0.83.35.0-2.22.1-1.41.2
Intermittent access total locomotion4.04.88.3-2.92.7-1.51.0
Intermittent access standard deviation0.94.510.0-2.11.8-0.43.2
Left kidney weight0.00.30.5-0.70.70.30.0
Right kidney weight0.10.50.7-0.80.90.70.1
Cocaine induced anxiety0.10.31.3-0.20.2-1.10.0
Post-drug Anxiety0.30.30.80.4-0.3-0.5-0.9
Baseline Anxiety1.01.82.51.2-1.01.5-1.6
Tail length0.63.25.8-2.42.40.01.0
Length with tail1.98.312.0-3.53.3-0.03.2
Length without tail0.84.08.6-2.01.80.52.9
Times rat made contact with spout0.10.20.2-0.50.50.40.2
Lifetime Intake0.70.91.5-1.21.1-0.9-0.3
Liver weight, left1.73.04.0-2.02.0-1.71.0
Liver weight, right0.30.61.70.5-0.51.3-0.1
Locomotor activity0.91.52.0-1.31.4-1.0-1.1
Locomotor testing distance0.61.52.2-1.31.5-0.7-1.2
Locomotor testing rearing0.20.81.6-1.11.2-0.0-0.7
Locomotion in novel chamber0.70.91.60.9-0.91.3-0.7
Locomotion in novel chamber post-restriction0.00.10.20.2-0.30.20.4
Fecal boli incidents, locomotor time 10.71.74.1-1.00.9-0.92.0
Change in fecal boli incidents, locomotor task0.10.10.10.4-0.40.30.3
Time >=10cm from walls, locomotor time 10.50.71.31.0-1.10.3-0.5
Bouts of movement, locomotor time 10.10.10.3-0.30.30.5-0.1
Total resting periods, locomotor time 10.10.20.3-0.30.20.50.5
Rest time, locomotor task time 10.30.60.90.5-0.60.81.0
Distance moved, locomotor task time 10.20.60.90.6-0.60.9-0.9
Vertical activity count, locomotor time 10.00.30.50.5-0.40.5-0.7
Time >=10cm from walls, locomotor time 20.82.35.61.3-1.32.4-0.4
Bouts of movement, locomotor time 20.20.82.40.10.01.6-0.8
Total resting periods, locomotor time 20.10.51.4-0.10.11.2-0.7
Rest time, locomotor task time 20.71.22.41.4-1.50.50.4
Distance moved, locomotor task time 21.72.25.01.3-1.22.2-1.0
Vertical activity count, locomotor time 20.10.20.8-0.10.10.9-0.4
Light reinforcement 10.31.34.60.6-0.50.4-2.1
Light reinforcement 20.00.10.20.3-0.30.4-0.3
Bone: marrow area12.029.535.4-5.95.8-5.34.5
Bone: maximum diameter4.18.312.3-3.03.0-3.51.6
Bone: maximum force1.73.44.8-2.02.1-2.20.2
Bone: maximum moment1.83.45.2-2.02.1-2.30.3
Mean time between licks in bursts0.32.15.3-1.21.10.52.3
Mean num. licks in bursts0.10.41.10.4-0.30.3-1.1
Cd content in liver1.82.04.51.0-1.20.92.1
Co content in liver0.60.72.00.5-0.61.40.3
Cu content in liver0.20.20.4-0.40.4-0.50.6
Fe content in liver0.50.61.3-0.60.6-1.1-0.5
K content in liver0.10.10.30.3-0.3-0.4-0.5
Mg content in liver1.21.31.91.4-1.3-0.2-1.3
Mn content in liver2.32.66.01.5-1.4-0.6-2.4
Na content in liver0.30.40.60.7-0.70.2-0.8
Rb content in liver0.91.01.71.3-1.30.3-0.8
Se content in liver1.01.23.11.0-0.90.3-1.8
Sr content in liver0.50.40.7-0.80.80.30.6
Zn content in liver0.20.20.7-0.20.2-0.90.2
Bone: minimum diameter11.922.929.2-5.45.4-4.73.3
Time in familiar zone, hab. session 12.32.54.8-1.51.4-1.02.2
Time in novel zone, hab. session 11.21.33.11.0-0.90.5-1.8
Total zone transitions, hab. session 10.20.30.9-0.20.30.6-0.9
Total locomotion distance, hab. session 10.40.62.10.2-0.10.5-1.5
Locomotion velocity, hab. session 10.40.61.90.3-0.20.6-1.4
Time in familiar zone, hab. session 21.92.12.5-1.61.6-1.31.4
Time in novel zone, hab. session 22.42.73.61.9-1.90.7-1.7
Total zone transitions, hab. session 20.60.71.50.2-0.11.2-1.2
Total locomotion distance, hab. session 21.21.52.70.8-0.71.5-1.6
Locomotion velocity, hab. session 21.62.13.31.1-1.01.6-1.8
Novel to familiar place preference ratio2.63.44.9-2.22.2-1.21.5
Novelty place preference1.82.33.3-1.81.8-1.01.2
Time in novel zone, NPP test1.82.23.1-1.81.8-1.31.0
Total zone transitions, NPP test0.91.35.00.5-0.3-0.0-2.2
Total locomotion distance, NPP test1.31.85.71.0-0.80.2-2.4
Locomotion velocity, NPP test1.01.54.50.8-0.70.5-2.1
Intraocular pressure0.71.12.1-1.31.5-0.7-0.3
Delta distance traveled before/after self-admin0.10.10.2-0.40.5-0.40.1
Delta ambulatory time before/after self-admin0.71.11.4-1.11.2-1.20.8
Parametrial fat weight0.30.71.90.7-0.8-0.01.4
Pavlov. Cond. lever latency0.50.71.11.0-1.0-0.60.4
Pavlov. Cond. magazine entry latency0.70.81.4-1.21.2-0.80.1
Pavlov. Cond. change in total contacts1.01.02.1-1.41.5-0.30.1
Pavlov. Cond. index score0.81.02.0-1.41.4-0.50.1
Pavlov. Cond. latency score0.81.02.0-1.41.4-0.20.1
Pavlov. Cond. lever contacts0.50.60.8-0.90.90.8-0.1
Pavlov. Cond. magazine entry number0.70.81.31.1-1.10.9-0.2
Pavlov. Cond. intertrial magazine entries4.04.87.9-2.72.8-1.90.7
Pavlov. Cond. lever-magazine prob. diff.0.81.01.9-1.31.4-0.7-0.1
Pavlov. Cond. response bias0.40.50.8-0.90.9-0.5-0.2
Pavlov. Cond. lever latency0.91.32.61.1-1.11.60.1
Pavlov. Cond. magazine entry latency0.10.10.2-0.10.1-0.50.5
Pavlov. Cond. change in total contacts0.51.32.5-1.11.1-1.60.1
Pavlov. Cond. index score0.91.52.6-1.21.3-1.60.4
Pavlov. Cond. latency score0.81.32.6-1.11.1-1.60.3
Pavlov. Cond. lever contacts0.71.02.1-0.91.0-1.4-0.5
Pavlov. Cond. magazine entry number0.00.00.0-0.10.10.1-0.0
Pavlov. Cond. intertrial magazine entries0.30.60.9-0.90.9-1.00.0
Pavlov. Cond. lever-magazine prob. diff.0.91.42.8-1.21.2-1.70.3
Pavlov. Cond. response bias0.81.12.3-1.01.0-1.5-0.2
Time in closed arm before self-admin0.20.30.6-0.10.30.8-0.7
Time in closed arm after self-admin0.40.41.50.2-0.21.20.4
Time in open arm before self-admin0.50.61.5-0.40.30.91.2
Time in open arm after self-admin0.10.10.2-0.50.4-0.30.2
Bone: periosteal estimation8.419.924.6-5.04.9-4.92.7
Bone: periosteal perimeter6.913.616.6-4.14.1-3.82.6
Bone: post-yield work2.84.86.6-2.62.5-1.71.7
Progressive ratio test 1 active lever presses0.40.60.9-1.00.90.4-0.8
Progressive ratio test 1 breakpoint0.40.61.0-1.01.00.3-0.8
Progressive ratio test 1 inactive lever presses0.61.73.4-1.81.8-0.20.1
Progressive ratio test 2 active lever presses0.10.20.3-0.60.50.0-0.3
Progressive ratio test 2 breakpoint0.10.20.4-0.60.50.0-0.3
Progressive ratio test 2 inactive lever presses0.00.10.2-0.50.40.20.0
Incentive Sensitization - Responses0.00.00.1-0.30.3-0.20.1
Incentive Sensitization - Breakpoint0.00.00.1-0.20.2-0.10.1
Sum of active levers in priming session hrs 5-60.50.40.90.6-0.61.00.1
Progressive ratio0.10.20.4-0.30.3-0.20.6
Food seeking constrained by brief footshock0.30.40.6-0.60.6-0.50.7
Seeking ratio, punishment vs. effort0.00.10.1-0.30.3-0.3-0.3
Retroperitoneal fat weight0.73.15.3-1.00.92.22.3
Reaction time number correct0.20.51.00.7-0.7-0.5-1.0
Reaction time mean minus median0.21.63.40.5-0.61.81.6
Reaction time mean minus median AUC0.10.40.50.6-0.70.70.6
Reaction time num false alarms3.05.27.6-2.62.8-2.50.1
Reaction time num false alarms AUC2.35.37.6-2.62.8-2.60.2
Reaction time trials correct on left0.20.51.00.7-0.7-0.5-1.0
Reaction time trials on left0.10.50.80.7-0.6-0.5-0.9
Reaction time mean0.40.81.21.0-1.10.80.7
Reaction time mean AUC0.51.21.71.2-1.31.10.6
Median of all reaction times0.50.71.51.1-1.20.30.3
Reaction time omissions0.30.41.50.1-0.30.41.2
Reaction time false alarm rate3.14.36.8-2.52.6-1.90.7
Reaction time premature initiation rate1.93.04.6-2.12.2-1.31.1
Reaction time premature initiations0.61.92.6-1.51.6-1.60.4
Std. dev. reaction times0.41.42.30.9-1.11.31.5
Reaction time trials completed0.10.50.80.7-0.6-0.5-0.9
Reaction time trials AUC0.10.50.70.8-0.7-0.4-0.9
Run reversals in cocaine runway, females2.02.26.90.2-0.32.61.3
Run reversals in cocaine runway, males0.10.10.30.00.00.10.5
Latency to leave start box in cocaine runway2.43.45.31.7-1.61.6-2.3
Latency to leave start box in cocaine runway, F1.21.52.41.0-0.81.4-1.6
Latency to leave start box in cocaine runway, M2.82.73.51.7-1.71.1-1.9
Std. dev. time between licks in bursts0.61.11.71.1-1.11.3-0.4
Total sessions with >9 infusions0.30.41.3-0.10.10.7-1.1
Short access day 1 total inactive lever presses0.10.31.0-0.10.10.0-1.0
Short access day 10 total inactive lever presses0.10.41.5-0.30.1-0.01.2
Short access day 1 total infusions0.51.04.20.00.10.1-2.0
Short access day 10 total infusions0.81.32.6-1.61.6-0.5-0.2
Short access total infusions0.60.81.8-0.70.7-0.6-1.4
Short access day 1 locomotion0.30.60.8-0.80.90.5-0.7
Short access day 10 total locomotion0.72.74.4-2.12.0-0.31.6
Short access total locomotion0.71.02.0-1.41.30.30.5
One hour access (0.3 mA shock)1.51.82.8-1.51.4-1.70.5
Compulsive drug intake1.01.52.4-1.21.2-1.60.8
One hour access (shock baseline)0.10.10.3-0.50.4-0.30.1
Social response proportion0.81.11.9-1.01.1-0.41.4
Social responses1.11.52.2-1.51.5-1.00.7
Social time0.91.43.8-0.90.9-0.31.9
Soleus weight0.51.62.4-1.61.50.21.2
Bone: stiffness1.01.72.8-1.31.4-1.70.7
Tibialis anterior weight0.41.54.1-0.70.72.00.9
Time to tail flick, vehicle, before self-admin0.40.51.90.0-0.20.21.4
Time to tail flick, vehicle, after self-admin0.10.20.2-0.40.4-0.50.4
Time to tail flick, test, before self-admin1.61.93.0-1.61.7-0.81.1
Time to tail flick, test, after self-admin1.41.51.8-1.21.2-1.11.4
Delta time to tail flick, vehicle, before/after SA0.20.20.7-0.30.3-0.8-0.1
Delta time to tail flick, test, before/after SA0.30.40.8-0.1-0.0-0.90.9
Tibia length0.41.21.5-1.11.01.21.1
Ambulatory time before self-admin0.51.62.11.2-1.11.5-1.4
Ambulatory time after self-admin0.00.00.10.00.20.2-0.3
Bone: tissue strength1.51.53.91.1-1.00.4-2.0
Total heroin consumption0.10.10.20.2-0.3-0.0-0.4
Bone: trabecular number0.71.33.40.2-0.1-1.8-1.4
Bone: trabecular spacing0.30.41.10.2-0.21.00.6
Bone: trabecular thickness1.52.04.0-1.31.4-2.00.6
Bone: trabecular tissue density0.30.51.00.7-0.71.0-0.1
Water consumed over 24 hours1.01.93.01.3-1.31.2-1.7
Number of responses in last shaping day0.60.82.60.1-0.21.60.6