LOC120095188

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Brain intron excision ratio chr10_90474854_90527932 0.04 0.03 3.9e-04 0.02 0.04 0.03 0.03 4.5e-03 2.8e-04 6.8e-04 7.1e-04
2 NAcc intron excision ratio chr10_90493678_90497362 0.03 0.02 6.7e-03 0.01 0.01 -0 0.01 3.0e-02 1.1e-02 4.3e-01 4.6e-02
3 Brain gene expression LOC120095188 0.06 0.03 2.4e-04 0.01 0.03 0.03 0.02 7.3e-02 8.5e-04 1.9e-03 6.9e-03

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
Bone: apparent density0.50.91.41.1-0.1-1.2
Area under the delay curve0.50.51.00.3-1.00.7
BMI with tail3.511.417.80.5-4.04.2
BMI without tail4.69.416.30.9-3.34.0
Body weight4.117.422.03.1-4.74.6
Weight adjusted by age0.30.40.60.2-0.70.8
Bone surface3.35.813.93.7-1.8-0.4
Bone volume2.33.99.03.0-1.6-0.3
Breakpoint value in progressive ratio session0.40.41.31.20.1-0.0
Number of licking bursts0.10.20.40.6-0.4-0.0
Context. condit. distance diff. score0.30.30.6-0.6-0.20.8
Locomotion velocity, session 10.40.41.01.00.0-0.5
Locomotion distance, session 10.00.10.1-0.00.2-0.3
Locomotion velocity, session 21.92.23.61.01.4-1.9
Locomotion distance, session 20.71.01.6-0.11.3-1.2
Locomotion velocity, session 30.20.30.60.20.4-0.8
Locomotion distance, session 30.30.40.60.70.0-0.8
Stereotopy head waving bouts, day 30.50.60.8-0.90.7-0.7
Stereotopy head waving duration, day 30.40.41.0-1.00.6-0.1
Locomotion velocity, session 70.50.50.6-0.60.7-0.8
Locomotion distance, session 70.10.10.3-0.60.3-0.1
Stereotopy head waving bouts, day 71.31.42.3-0.61.2-1.5
Stereotopy head waving duration, day 73.94.76.4-1.42.5-2.4
Locomotion velocity, session 80.80.91.41.2-0.61.0
Locomotion distance, session 80.30.40.9-0.70.9-0.1
Degree of sensitization distance0.60.61.3-0.7-0.31.1
Degree of sensitization stereotypy2.02.23.6-0.61.6-1.9
Conditioned locomotion0.10.10.2-0.40.10.4
Cocaine response after cond. corrected0.80.91.90.9-1.40.3
Cocaine response after cond. not corrected1.01.11.61.3-0.6-1.1
Cocaine response before conditioning1.82.24.30.31.4-2.1
Saline control response0.40.51.30.4-0.31.1
Bone: connectivity density0.81.21.91.30.1-1.4
Bone: cortical apparent density5.06.613.0-3.62.3-1.1
Bone: cortical area2.43.65.32.2-2.30.8
Bone: cortical porosity12.914.133.25.8-3.00.1
Bone: cortical porosity10.111.023.64.9-3.00.5
Bone: cortical thickness0.61.02.0-1.4-0.1-0.9
Bone: cortical thickness1.82.14.2-1.01.0-2.0
Bone: cortical tissue density5.06.612.8-3.62.4-1.1
Condit. Reinf. active minus inactive responses0.91.12.91.7-0.50.2
Condit. Reinf. active-inactive response ratio0.30.41.01.0-0.1-0.3
Condit. Reinf. active responses0.70.92.41.6-0.30.4
Condit. Reinf. inactive responses0.10.20.30.4-0.10.5
Incentive salience index mean0.91.12.91.7-0.1-0.6
Condit. Reinf. lever presses0.60.81.40.60.8-1.2
Condit. Reinf. active minus inactive responses2.12.77.22.7-0.7-0.6
Condit. Reinf. active-inactive response ratio2.12.25.62.4-0.5-0.9
Condit. Reinf. active responses1.62.26.32.5-0.60.0
Condit. Reinf. inactive responses0.20.20.40.40.20.6
Condit. Reinf. lever presses0.60.92.41.6-0.2-0.4
Condit. Reinf. lever reinforcers received1.52.15.72.4-0.70.0
Conditioned reinforcement - actives0.80.81.60.3-0.81.3
Conditioned reinforcement - inactives1.01.11.60.9-1.31.0
Conditioned locomotion2.02.42.91.5-1.71.4
Patch foraging indifference point 0 sec0.50.91.40.9-0.71.2
Patch foraging indifference point AUC0.70.81.80.3-0.71.4
Delay disc. indifference point, 0s delay0.30.30.4-0.70.6-0.5
Delay disc. indifference point, 16s delay2.12.23.70.9-1.91.4
Delay disc. indifference point, 2s delay0.00.00.10.10.2-0.2
Delay disc. indifference point, 24s delay3.02.94.50.8-1.92.1
Delay disc. indifference point, 4s delay0.30.30.50.7-0.3-0.7
Delay disc. indifference point, 8s delay0.20.20.6-0.80.0-0.1
Indifference point function ln k0.30.41.0-0.00.4-1.0
Indifference point function log k0.30.41.0-0.00.4-1.0
Patch foraging total patch changes 0 sec0.91.51.71.3-1.01.3
Patch foraging total patch changes 12 sec0.30.41.10.40.11.1
Patch foraging total patch changes 18 sec1.51.92.31.5-1.31.2
Patch foraging total patch changes 24 sec0.70.81.11.1-0.70.9
Patch foraging total patch changes 6 sec0.71.01.41.2-0.90.9
Patch foraging time to switch 0 sec0.30.51.00.20.6-1.0
Patch foraging water rate 0 sec1.21.92.60.9-1.61.5
Patch foraging water rate 12 sec0.20.20.70.1-0.8-0.3
Patch foraging water rate 18 sec0.40.51.4-0.10.5-1.2
Patch foraging water rate 24 sec0.00.00.10.1-0.2-0.3
Patch foraging water rate 6 sec0.10.10.30.2-0.5-0.3
Seeking ratio, delayed vs. immediate footshock0.40.51.10.0-0.61.0
Distance traveled before self-admin1.51.62.91.7-1.30.2
Distance traveled after self-admin1.01.11.81.3-1.20.3
Extensor digitorum longus weight2.07.714.6-2.5-1.53.8
Bone: elastic displacement0.30.41.0-0.30.1-1.0
Bone: elastic work0.40.60.90.8-1.0-0.1
Bone: endosteal estimation7.616.636.26.0-3.31.6
Bone: endosteal perimeter12.024.943.46.6-4.73.0
Epididymis fat weight2.14.97.61.1-2.42.7
Delta time in closed arm before/after self-admin0.40.30.90.30.1-1.0
Delta time in open arm before/after self-admin1.11.02.1-1.40.60.8
Diff in mean of infusions in LGA sessions0.00.00.0-0.20.00.1
Delay discount exponential model param0.70.71.2-0.51.1-0.8
Extinction: sum of active levers before priming0.30.30.90.0-0.30.9
Active lever presses in extinction session 61.91.93.21.8-1.30.8
Bone: final force0.81.32.11.4-1.3-0.2
Bone: final moment0.91.42.51.6-1.3-0.3
Food consumed during 24 hour testing period3.13.85.91.3-1.92.4
Glucose0.00.00.10.0-0.30.2
Heart weight1.52.13.20.8-1.81.6
Delay discount hyperbolic model param0.30.30.6-0.40.8-0.5
Intermittent access intake day 1-15 change0.80.81.41.2-0.90.5
Intermittent access intake escalation0.20.20.40.6-0.40.2
Intermittent access intake escalation 20.60.61.11.1-0.70.4
Intermitt. access day 1 inactive lever presses1.71.84.62.2-0.8-0.2
Intermitt. access day 15 inactive lever presses1.11.22.71.6-1.00.2
Intermitt. access escalation Index0.60.50.7-0.80.6-0.7
Intermittent access day 1 total infusions1.21.42.00.6-1.41.4
Intermittent access day 15 total infusions1.51.72.80.5-1.41.7
Intermittent access terminal intake (last 3 days)2.22.43.01.2-1.61.7
Intermittent access total infusions1.82.02.71.1-1.41.6
Intermittent access day 1 locomotion3.83.94.91.7-2.22.0
Intermittent access day 15 total locomotion2.72.93.41.5-1.71.9
Intermittent access total locomotion4.24.85.12.2-2.32.1
Intermittent access standard deviation0.80.91.21.1-0.90.7
Left kidney weight0.20.51.30.1-1.10.4
Right kidney weight0.10.20.40.4-0.7-0.3
Cocaine induced anxiety0.20.30.70.3-0.9-0.1
Post-drug Anxiety0.80.92.00.8-1.40.2
Baseline Anxiety0.00.00.0-0.2-0.1-0.1
Tail length0.82.43.82.0-1.21.5
Length with tail1.24.28.52.9-1.71.2
Length without tail0.40.82.01.4-0.4-0.4
Times rat made contact with spout0.50.60.90.9-0.80.5
Lifetime Intake1.41.62.01.1-1.31.4
Liver weight, left0.20.40.60.50.8-0.6
Liver weight, right0.20.41.0-1.00.1-0.5
Locomotor activity0.10.10.20.40.5-0.2
Locomotor testing distance0.30.51.31.1-0.10.4
Locomotor testing rearing0.20.41.01.00.3-0.0
Locomotion in novel chamber0.81.02.01.4-1.0-0.1
Locomotion in novel chamber post-restriction0.81.01.11.0-1.01.0
Fecal boli incidents, locomotor time 10.40.40.80.0-0.60.9
Change in fecal boli incidents, locomotor task0.50.50.7-0.3-0.80.8
Time >=10cm from walls, locomotor time 10.80.81.3-0.70.7-1.1
Bouts of movement, locomotor time 10.20.20.6-0.80.1-0.0
Total resting periods, locomotor time 10.20.20.6-0.80.0-0.1
Rest time, locomotor task time 11.21.31.6-1.01.2-1.3
Distance moved, locomotor task time 10.91.01.30.9-1.11.0
Vertical activity count, locomotor time 10.91.01.41.2-1.10.5
Time >=10cm from walls, locomotor time 20.91.01.51.2-0.1-1.2
Bouts of movement, locomotor time 20.10.10.1-0.1-0.30.3
Total resting periods, locomotor time 20.10.10.2-0.5-0.10.1
Rest time, locomotor task time 20.91.12.6-1.60.7-0.4
Distance moved, locomotor task time 20.40.51.21.1-0.2-0.5
Vertical activity count, locomotor time 20.70.72.01.4-0.2-0.3
Light reinforcement 10.30.50.8-0.90.60.6
Light reinforcement 20.20.20.4-0.60.50.1
Bone: marrow area7.516.335.86.0-3.31.5
Bone: maximum diameter4.78.515.74.0-3.01.1
Bone: maximum force2.03.45.51.9-2.31.0
Bone: maximum moment2.03.45.22.0-2.30.9
Mean time between licks in bursts1.82.63.80.6-2.01.9
Mean num. licks in bursts0.20.30.6-0.2-0.40.8
Cd content in liver2.42.65.1-2.31.5-0.7
Co content in liver0.40.40.8-0.70.9-0.1
Cu content in liver0.00.00.10.10.3-0.1
Fe content in liver1.72.03.0-1.01.7-1.4
K content in liver0.40.40.60.40.8-0.6
Mg content in liver2.42.44.2-1.42.0-1.1
Mn content in liver3.23.65.4-1.02.3-2.1
Na content in liver0.70.71.30.21.1-0.9
Rb content in liver5.06.28.9-2.33.0-2.1
Se content in liver1.11.33.0-1.70.9-0.2
Sr content in liver1.61.42.41.3-1.50.5
Zn content in liver0.00.00.0-0.1-0.0-0.1
Bone: minimum diameter10.319.329.75.5-4.52.9
Time in familiar zone, hab. session 10.70.71.60.3-0.61.3
Time in novel zone, hab. session 10.50.51.2-0.30.3-1.1
Total zone transitions, hab. session 10.20.30.50.2-0.60.7
Total locomotion distance, hab. session 10.20.30.60.8-0.4-0.3
Locomotion velocity, hab. session 10.20.30.80.9-0.4-0.1
Time in familiar zone, hab. session 20.50.50.90.6-0.40.9
Time in novel zone, hab. session 20.60.61.3-0.60.3-1.1
Total zone transitions, hab. session 20.10.10.2-0.50.40.3
Total locomotion distance, hab. session 20.30.40.8-0.90.60.1
Locomotion velocity, hab. session 20.30.40.8-0.90.50.2
Novel to familiar place preference ratio0.91.01.60.9-1.30.8
Novelty place preference0.50.50.80.7-0.90.4
Time in novel zone, NPP test0.40.40.60.7-0.80.1
Total zone transitions, NPP test0.20.30.6-0.80.7-0.1
Total locomotion distance, NPP test0.20.20.4-0.20.6-0.6
Locomotion velocity, NPP test0.10.10.2-0.50.10.3
Intraocular pressure3.85.38.01.1-2.62.8
Delta distance traveled before/after self-admin0.40.40.4-0.60.6-0.7
Delta ambulatory time before/after self-admin0.30.30.4-0.60.6-0.5
Parametrial fat weight0.50.91.41.2-1.10.4
Pavlov. Cond. lever latency1.31.64.2-2.10.50.6
Pavlov. Cond. magazine entry latency1.21.64.42.1-0.3-0.4
Pavlov. Cond. change in total contacts1.21.33.51.9-0.1-0.5
Pavlov. Cond. index score1.31.64.52.1-0.5-0.4
Pavlov. Cond. latency score1.11.43.92.0-0.5-0.3
Pavlov. Cond. lever contacts1.31.54.12.0-0.6-0.4
Pavlov. Cond. magazine entry number0.81.02.4-1.6-0.20.8
Pavlov. Cond. intertrial magazine entries1.31.64.1-0.0-0.82.0
Pavlov. Cond. lever-magazine prob. diff.1.51.95.12.3-0.7-0.3
Pavlov. Cond. response bias1.72.15.32.3-0.2-1.0
Pavlov. Cond. lever latency0.20.20.5-0.7-0.20.3
Pavlov. Cond. magazine entry latency0.70.91.2-0.71.1-0.9
Pavlov. Cond. change in total contacts0.20.30.60.20.8-0.2
Pavlov. Cond. index score0.20.30.30.60.4-0.6
Pavlov. Cond. latency score0.30.40.60.70.4-0.8
Pavlov. Cond. lever contacts0.10.10.20.40.3-0.3
Pavlov. Cond. magazine entry number1.31.61.91.0-1.41.4
Pavlov. Cond. intertrial magazine entries7.09.29.73.1-3.12.9
Pavlov. Cond. lever-magazine prob. diff.0.20.30.40.40.4-0.6
Pavlov. Cond. response bias0.10.10.20.10.5-0.5
Time in closed arm before self-admin1.61.82.4-0.91.6-1.5
Time in closed arm after self-admin1.81.83.1-0.51.4-1.8
Time in open arm before self-admin1.01.12.40.9-1.60.4
Time in open arm after self-admin2.83.04.90.6-2.02.2
Bone: periosteal estimation6.613.626.95.2-3.51.4
Bone: periosteal perimeter6.811.319.64.4-3.51.3
Bone: post-yield work3.65.06.62.6-2.51.5
Progressive ratio test 1 active lever presses2.02.12.61.6-1.41.3
Progressive ratio test 1 breakpoint2.93.03.21.8-1.71.7
Progressive ratio test 1 inactive lever presses1.51.72.31.5-1.21.2
Progressive ratio test 2 active lever presses2.52.72.91.5-1.71.7
Progressive ratio test 2 breakpoint3.94.34.82.1-2.21.9
Progressive ratio test 2 inactive lever presses1.92.13.40.9-1.51.9
Incentive Sensitization - Responses1.81.82.01.3-1.41.4
Incentive Sensitization - Breakpoint1.71.71.81.3-1.41.3
Sum of active levers in priming session hrs 5-60.80.81.3-1.21.00.1
Progressive ratio0.00.10.10.1-0.20.3
Food seeking constrained by brief footshock1.01.22.31.5-0.61.0
Seeking ratio, punishment vs. effort0.20.30.70.8-0.30.3
Retroperitoneal fat weight0.72.22.51.4-1.41.6
Reaction time number correct0.10.10.2-0.3-0.50.3
Reaction time mean minus median0.10.10.2-0.40.3-0.3
Reaction time mean minus median AUC1.01.42.0-1.41.1-0.9
Reaction time num false alarms2.43.25.92.4-1.71.0
Reaction time num false alarms AUC1.92.64.92.2-1.40.9
Reaction time trials correct on left0.10.10.2-0.3-0.50.3
Reaction time trials on left0.10.10.3-0.3-0.50.3
Reaction time mean2.23.14.1-1.12.0-2.0
Reaction time mean AUC2.93.95.1-1.22.2-2.3
Median of all reaction times2.73.85.2-1.12.2-2.3
Reaction time omissions0.20.20.70.20.2-0.8
Reaction time false alarm rate1.52.04.92.2-1.00.5
Reaction time premature initiation rate0.70.91.50.6-1.01.2
Reaction time premature initiations0.81.11.90.3-1.11.4
Std. dev. reaction times0.91.21.5-0.91.2-1.2
Reaction time trials completed0.10.10.3-0.3-0.50.3
Reaction time trials AUC0.10.10.2-0.4-0.40.3
Run reversals in cocaine runway, females1.41.33.00.7-1.70.7
Run reversals in cocaine runway, males0.60.50.90.8-1.00.2
Latency to leave start box in cocaine runway0.00.00.10.1-0.1-0.3
Latency to leave start box in cocaine runway, F0.30.30.60.6-0.7-0.3
Latency to leave start box in cocaine runway, M0.80.81.3-0.91.1-0.4
Std. dev. time between licks in bursts0.20.30.5-0.3-0.50.7
Total sessions with >9 infusions0.30.30.6-0.6-0.10.7
Short access day 1 total inactive lever presses0.91.01.51.2-1.20.3
Short access day 10 total inactive lever presses0.40.50.60.5-0.80.7
Short access day 1 total infusions0.40.51.10.1-0.51.0
Short access day 10 total infusions3.03.33.51.9-1.81.8
Short access total infusions1.01.11.61.3-0.91.0
Short access day 1 locomotion3.43.65.41.1-2.12.3
Short access day 10 total locomotion5.96.67.02.6-2.52.5
Short access total locomotion3.73.84.61.7-2.02.2
One hour access (0.3 mA shock)0.91.01.11.0-1.00.9
Compulsive drug intake0.30.30.80.10.1-0.9
One hour access (shock baseline)0.70.81.40.6-0.71.2
Social response proportion1.01.11.80.2-1.31.2
Social responses0.10.20.30.3-0.40.6
Social time1.31.72.81.1-1.71.1
Soleus weight0.72.23.21.4-1.81.1
Bone: stiffness0.30.40.50.7-0.70.5
Tibialis anterior weight1.44.710.6-0.1-1.93.3
Time to tail flick, vehicle, before self-admin0.70.71.01.0-0.9-0.4
Time to tail flick, vehicle, after self-admin0.40.40.90.4-0.50.9
Time to tail flick, test, before self-admin0.00.00.1-0.30.0-0.1
Time to tail flick, test, after self-admin0.00.00.10.20.0-0.2
Delta time to tail flick, vehicle, before/after SA0.20.20.4-0.10.50.6
Delta time to tail flick, test, before/after SA0.20.20.5-0.10.7-0.4
Tibia length0.10.40.80.5-0.9-0.1
Ambulatory time before self-admin1.61.72.91.7-1.40.4
Ambulatory time after self-admin1.01.12.01.4-1.10.0
Bone: tissue strength0.40.40.9-0.90.4-0.5
Total heroin consumption0.50.61.11.10.1-0.8
Bone: trabecular number0.71.22.21.5-0.2-1.1
Bone: trabecular spacing0.50.60.9-1.00.10.9
Bone: trabecular thickness2.12.64.92.2-1.70.1
Bone: trabecular tissue density0.40.51.5-1.20.3-0.2
Water consumed over 24 hours0.10.10.20.1-0.40.2
Number of responses in last shaping day3.23.34.82.2-2.10.9