LOC120094233

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 NAcc mRNA stability LOC120094233 0.04 0.02 3.5e-07 0.05 0.04 0.05 0.05 1.4e-08 4.2e-07 4.3e-08 9.5e-08
2 NAcc gene expression LOC120094233 0.02 0.01 7.8e-03 0.02 0.02 0.01 0.02 7.3e-04 1.3e-03 6.7e-03 1.4e-03
3 pVTA gene expression LOC120094233 0.04 0.03 7.2e-03 0.01 0.01 0 0.01 5.1e-02 7.7e-02 3.2e-01 5.1e-02
4 PL gene expression LOC120094233 0.02 0.01 5.0e-03 0.02 0.02 0.01 0.01 2.4e-03 3.7e-03 7.3e-03 9.0e-03

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density1.22.03.0-1.71.11.41.4
Area under the delay curve0.50.61.3-1.10.40.90.5
BMI with tail7.124.629.95.5-5.0-4.6-4.7
BMI without tail4.112.619.04.4-3.3-3.7-2.7
Body weight3.113.418.14.3-4.0-3.2-3.0
Weight adjusted by age0.40.61.11.0-1.1-0.10.3
Bone surface1.42.54.9-2.21.41.31.1
Bone volume1.01.83.0-1.71.21.21.1
Breakpoint value in progressive ratio session0.20.20.7-0.10.30.40.8
Number of licking bursts0.20.30.4-0.70.50.60.6
Context. condit. distance diff. score0.20.30.60.1-0.8-0.3-0.7
Locomotion velocity, session 12.22.43.01.7-1.3-1.5-1.7
Locomotion distance, session 15.16.48.62.9-2.3-2.1-2.7
Locomotion velocity, session 26.87.910.12.8-2.6-2.6-3.2
Locomotion distance, session 27.09.810.63.2-3.0-3.0-3.3
Locomotion velocity, session 31.11.32.40.8-1.1-1.6-0.9
Locomotion distance, session 30.10.10.2-0.1-0.4-0.5-0.2
Stereotopy head waving bouts, day 30.10.10.2-0.30.1-0.50.3
Stereotopy head waving duration, day 30.20.20.40.6-0.4-0.6-0.4
Locomotion velocity, session 73.53.85.82.4-2.2-1.6-1.5
Locomotion distance, session 70.40.51.01.0-0.5-0.7-0.1
Stereotopy head waving bouts, day 70.40.51.7-1.30.30.20.3
Stereotopy head waving duration, day 70.70.81.8-1.30.70.70.6
Locomotion velocity, session 84.15.06.22.3-1.8-2.5-2.3
Locomotion distance, session 82.73.94.81.8-2.0-1.8-2.2
Degree of sensitization distance0.20.20.90.9-0.1-0.10.1
Degree of sensitization stereotypy0.20.20.3-0.6-0.4-0.4-0.5
Conditioned locomotion0.20.30.6-0.40.80.00.6
Cocaine response after cond. corrected0.30.41.10.60.2-1.0-0.4
Cocaine response after cond. not corrected0.40.40.90.80.3-0.9-0.5
Cocaine response before conditioning0.00.10.10.20.30.3-0.0
Saline control response2.22.93.92.0-1.5-1.9-1.3
Bone: connectivity density1.42.24.3-2.11.21.11.4
Bone: cortical apparent density0.00.00.00.20.2-0.0-0.1
Bone: cortical area2.64.05.42.0-2.3-1.9-1.8
Bone: cortical porosity0.91.02.11.0-1.5-0.7-0.6
Bone: cortical porosity1.31.42.91.0-1.7-0.7-1.0
Bone: cortical thickness1.32.13.11.7-1.8-1.1-1.2
Bone: cortical thickness0.20.20.30.6-0.30.10.5
Bone: cortical tissue density0.00.00.00.10.2-0.1-0.1
Condit. Reinf. active minus inactive responses0.10.10.30.0-0.40.20.5
Condit. Reinf. active-inactive response ratio1.81.93.41.4-1.9-1.1-1.0
Condit. Reinf. active responses0.10.20.70.00.00.10.8
Condit. Reinf. inactive responses1.41.82.7-1.01.60.91.6
Incentive salience index mean0.40.51.40.6-1.2-0.6-0.2
Condit. Reinf. lever presses2.63.74.21.9-2.1-2.0-1.7
Condit. Reinf. active minus inactive responses0.70.92.1-0.10.41.11.4
Condit. Reinf. active-inactive response ratio0.20.20.50.70.10.20.7
Condit. Reinf. active responses1.01.42.7-0.60.81.31.6
Condit. Reinf. inactive responses0.60.81.1-0.90.71.00.9
Condit. Reinf. lever presses0.20.30.9-0.30.20.30.9
Condit. Reinf. lever reinforcers received0.81.22.5-0.50.61.21.6
Conditioned reinforcement - actives0.10.20.7-0.40.80.10.2
Conditioned reinforcement - inactives0.20.30.60.4-0.2-0.8-0.7
Conditioned locomotion0.20.20.4-0.20.6-0.20.7
Patch foraging indifference point 0 sec0.10.20.30.40.1-0.4-0.5
Patch foraging indifference point AUC0.10.10.2-0.3-0.20.2-0.4
Delay disc. indifference point, 0s delay1.82.03.1-1.81.11.51.3
Delay disc. indifference point, 16s delay0.10.10.4-0.0-0.60.3-0.1
Delay disc. indifference point, 2s delay0.30.30.60.2-0.5-0.8-0.6
Delay disc. indifference point, 24s delay0.30.30.6-0.50.40.80.6
Delay disc. indifference point, 4s delay1.31.42.7-1.61.21.00.5
Delay disc. indifference point, 8s delay0.40.51.0-1.00.30.70.5
Indifference point function ln k0.10.10.20.40.00.40.5
Indifference point function log k0.10.10.20.40.00.40.5
Patch foraging total patch changes 0 sec0.20.30.60.6-0.2-0.6-0.8
Patch foraging total patch changes 12 sec0.20.20.40.1-0.6-0.2-0.6
Patch foraging total patch changes 18 sec0.10.10.3-0.10.20.5-0.5
Patch foraging total patch changes 24 sec0.40.71.8-0.90.41.40.2
Patch foraging total patch changes 6 sec0.10.10.2-0.50.4-0.10.1
Patch foraging time to switch 0 sec0.81.62.6-1.41.60.71.2
Patch foraging water rate 0 sec0.40.81.41.2-1.0-0.3-0.7
Patch foraging water rate 12 sec0.40.81.40.9-1.2-0.3-0.9
Patch foraging water rate 18 sec2.53.85.42.3-1.9-1.9-1.6
Patch foraging water rate 24 sec0.10.10.30.4-0.6-0.10.2
Patch foraging water rate 6 sec0.60.91.31.1-1.1-0.5-0.9
Seeking ratio, delayed vs. immediate footshock0.10.20.4-0.6-0.3-0.4-0.2
Distance traveled before self-admin1.21.52.01.3-1.0-1.2-1.4
Distance traveled after self-admin0.00.00.1-0.10.20.00.2
Extensor digitorum longus weight3.011.913.93.7-3.3-3.0-3.7
Bone: elastic displacement1.41.62.71.5-1.6-0.7-1.1
Bone: elastic work0.71.02.01.2-1.4-0.5-0.3
Bone: endosteal estimation0.61.22.20.8-1.0-1.5-1.0
Bone: endosteal perimeter2.14.56.41.5-2.0-2.5-2.3
Epididymis fat weight0.61.93.31.8-1.4-1.4-0.5
Delta time in closed arm before/after self-admin0.30.30.8-0.3-0.5-0.90.0
Delta time in open arm before/after self-admin0.60.61.0-0.60.91.0-0.2
Diff in mean of infusions in LGA sessions0.10.10.3-0.60.20.2-0.1
Delay discount exponential model param0.40.51.01.0-0.4-0.8-0.4
Extinction: sum of active levers before priming0.20.20.50.4-0.7-0.20.2
Active lever presses in extinction session 60.20.20.50.2-0.2-0.3-0.7
Bone: final force0.10.20.30.1-0.6-0.20.5
Bone: final moment0.10.20.50.3-0.7-0.20.6
Food consumed during 24 hour testing period0.60.81.2-0.51.10.91.0
Glucose0.81.22.61.6-1.0-0.9-0.7
Heart weight0.71.01.71.3-0.9-0.9-0.8
Delay discount hyperbolic model param0.40.50.91.0-0.5-0.7-0.3
Intermittent access intake day 1-15 change0.10.10.2-0.50.30.2-0.2
Intermittent access intake escalation0.10.20.4-0.60.40.3-0.2
Intermittent access intake escalation 20.91.02.1-1.51.10.90.2
Intermitt. access day 1 inactive lever presses0.20.92.30.5-0.6-0.9-1.5
Intermitt. access day 15 inactive lever presses0.10.20.3-0.50.1-0.5-0.3
Intermitt. access escalation Index0.50.71.5-0.81.20.70.1
Intermittent access day 1 total infusions0.30.61.40.9-0.0-1.2-0.3
Intermittent access day 15 total infusions0.20.20.60.50.1-0.7-0.4
Intermittent access terminal intake (last 3 days)0.20.30.60.60.1-0.8-0.6
Intermittent access total infusions0.60.71.71.0-0.2-1.3-0.6
Intermittent access day 1 locomotion1.21.53.61.2-0.5-1.9-0.9
Intermittent access day 15 total locomotion1.12.05.50.9-0.7-2.3-1.0
Intermittent access total locomotion1.61.95.31.1-0.4-2.3-1.0
Intermittent access standard deviation0.20.30.70.2-0.5-0.8-0.5
Left kidney weight2.812.814.43.8-3.2-3.6-3.7
Right kidney weight3.114.115.84.0-3.2-3.8-3.9
Cocaine induced anxiety0.40.51.0-0.40.81.00.5
Post-drug Anxiety0.10.10.2-0.10.50.30.5
Baseline Anxiety0.81.02.10.7-0.9-1.5-0.5
Tail length0.20.82.3-0.00.90.41.5
Length with tail0.00.10.20.4-0.4-0.10.2
Length without tail0.31.01.90.6-1.4-0.9-0.9
Times rat made contact with spout0.70.81.40.8-1.1-0.5-1.2
Lifetime Intake0.40.51.00.9-0.1-1.0-0.6
Liver weight, left2.54.26.62.0-1.3-2.6-2.1
Liver weight, right1.93.45.52.2-0.9-2.3-1.5
Locomotor activity0.40.62.11.4-0.1-0.3-0.4
Locomotor testing distance0.10.10.50.70.1-0.1-0.2
Locomotor testing rearing0.61.22.11.5-0.7-1.0-1.0
Locomotion in novel chamber1.62.03.2-1.41.80.91.4
Locomotion in novel chamber post-restriction0.50.81.8-0.91.30.40.7
Fecal boli incidents, locomotor time 10.71.01.70.5-0.8-1.1-1.3
Change in fecal boli incidents, locomotor task0.20.20.50.7-0.3-0.20.0
Time >=10cm from walls, locomotor time 10.50.50.90.7-0.9-0.7-0.3
Bouts of movement, locomotor time 10.00.00.0-0.10.0-0.20.2
Total resting periods, locomotor time 10.10.10.20.1-0.2-0.4-0.4
Rest time, locomotor task time 12.22.74.81.4-2.2-1.0-1.7
Distance moved, locomotor task time 10.50.71.7-0.61.30.10.9
Vertical activity count, locomotor time 10.40.91.8-0.81.30.21.0
Time >=10cm from walls, locomotor time 20.10.20.40.1-0.4-0.1-0.7
Bouts of movement, locomotor time 20.50.81.11.0-1.1-0.9-0.6
Total resting periods, locomotor time 20.50.91.21.1-1.1-0.8-0.6
Rest time, locomotor task time 20.10.10.20.3-0.4-0.2-0.0
Distance moved, locomotor task time 20.50.51.2-1.10.70.20.6
Vertical activity count, locomotor time 20.20.30.6-0.80.50.40.5
Light reinforcement 10.00.10.2-0.20.1-0.50.1
Light reinforcement 20.10.10.30.0-0.5-0.10.4
Bone: marrow area0.71.42.51.0-1.1-1.6-1.1
Bone: maximum diameter4.68.610.12.6-2.9-3.0-3.2
Bone: maximum force0.20.30.60.5-0.8-0.6-0.2
Bone: maximum moment0.30.50.90.7-0.9-0.7-0.2
Mean time between licks in bursts0.20.41.1-0.5-1.00.1-0.6
Mean num. licks in bursts1.21.82.21.4-1.5-1.0-1.4
Cd content in liver0.60.71.2-1.00.61.10.6
Co content in liver0.30.40.70.9-0.8-0.4-0.1
Cu content in liver0.80.91.2-1.10.70.91.0
Fe content in liver0.10.10.1-0.20.30.30.3
K content in liver1.21.22.70.8-0.6-1.6-1.0
Mg content in liver0.30.30.80.3-0.4-0.9-0.3
Mn content in liver4.04.45.62.0-2.2-2.4-1.8
Na content in liver0.20.20.90.00.1-1.0-0.0
Rb content in liver0.10.10.30.3-0.5-0.2-0.0
Se content in liver0.91.11.3-1.11.11.11.0
Sr content in liver0.10.10.1-0.20.1-0.30.3
Zn content in liver0.91.01.4-0.61.21.10.9
Bone: minimum diameter0.10.30.90.1-0.9-0.2-0.3
Time in familiar zone, hab. session 16.46.28.1-2.32.52.82.2
Time in novel zone, hab. session 15.05.06.62.4-2.2-2.6-1.7
Total zone transitions, hab. session 14.25.97.72.8-2.6-2.1-2.2
Total locomotion distance, hab. session 12.12.93.51.8-1.8-1.9-1.3
Locomotion velocity, hab. session 12.53.64.52.0-2.1-1.8-1.6
Time in familiar zone, hab. session 20.90.91.3-1.00.81.10.9
Time in novel zone, hab. session 22.82.94.12.0-1.6-1.7-1.5
Total zone transitions, hab. session 24.05.15.82.4-2.4-2.0-2.1
Total locomotion distance, hab. session 21.62.12.71.7-1.4-1.4-1.3
Locomotion velocity, hab. session 21.72.32.61.6-1.5-1.5-1.4
Novel to familiar place preference ratio0.00.00.1-0.1-0.20.0-0.3
Novelty place preference0.10.10.20.2-0.4-0.1-0.4
Time in novel zone, NPP test0.30.30.50.6-0.7-0.3-0.6
Total zone transitions, NPP test9.613.817.14.1-3.6-3.4-3.7
Total locomotion distance, NPP test5.67.79.63.1-2.6-2.9-2.4
Locomotion velocity, NPP test4.05.66.82.6-2.2-2.6-2.0
Intraocular pressure0.71.01.31.1-1.0-0.7-1.0
Delta distance traveled before/after self-admin1.71.82.4-1.41.21.51.3
Delta ambulatory time before/after self-admin1.21.51.7-1.11.21.11.3
Parametrial fat weight0.10.20.50.7-0.50.1-0.1
Pavlov. Cond. lever latency1.01.22.4-1.01.50.81.0
Pavlov. Cond. magazine entry latency1.72.25.31.0-2.3-1.3-1.0
Pavlov. Cond. change in total contacts0.70.71.20.4-1.0-1.1-0.7
Pavlov. Cond. index score1.31.73.71.1-1.9-0.9-0.9
Pavlov. Cond. latency score1.51.83.91.2-2.0-1.0-1.1
Pavlov. Cond. lever contacts1.31.63.01.1-1.7-1.0-1.0
Pavlov. Cond. magazine entry number0.60.72.3-0.51.50.50.4
Pavlov. Cond. intertrial magazine entries3.44.15.1-1.82.31.82.2
Pavlov. Cond. lever-magazine prob. diff.1.11.43.20.9-1.8-0.9-0.9
Pavlov. Cond. response bias0.60.82.20.5-1.5-0.7-0.5
Pavlov. Cond. lever latency0.10.20.4-0.50.60.1-0.2
Pavlov. Cond. magazine entry latency1.31.53.01.1-1.7-1.0-1.0
Pavlov. Cond. change in total contacts0.81.32.31.4-1.5-0.8-0.5
Pavlov. Cond. index score0.30.41.10.6-1.0-0.4-0.2
Pavlov. Cond. latency score0.40.51.20.7-1.1-0.5-0.3
Pavlov. Cond. lever contacts0.30.41.00.6-1.0-0.5-0.1
Pavlov. Cond. magazine entry number0.60.81.9-0.51.40.70.6
Pavlov. Cond. intertrial magazine entries4.66.97.8-2.52.82.52.7
Pavlov. Cond. lever-magazine prob. diff.0.40.51.30.6-1.1-0.5-0.2
Pavlov. Cond. response bias0.50.71.90.6-1.4-0.8-0.3
Time in closed arm before self-admin0.20.30.30.60.50.5-0.5
Time in closed arm after self-admin0.60.71.00.9-0.4-1.0-0.8
Time in open arm before self-admin0.60.62.0-0.6-0.30.41.4
Time in open arm after self-admin1.61.82.9-1.71.01.51.0
Bone: periosteal estimation1.63.54.11.7-2.0-2.0-1.7
Bone: periosteal perimeter2.84.85.72.0-2.4-2.2-2.2
Bone: post-yield work0.30.41.4-1.20.10.1-0.2
Progressive ratio test 1 active lever presses0.10.10.20.40.4-0.4-0.2
Progressive ratio test 1 breakpoint0.10.10.20.50.3-0.3-0.3
Progressive ratio test 1 inactive lever presses0.40.61.2-0.41.10.80.6
Progressive ratio test 2 active lever presses0.20.20.50.5-0.3-0.10.7
Progressive ratio test 2 breakpoint0.20.20.50.4-0.10.10.7
Progressive ratio test 2 inactive lever presses0.10.20.2-0.30.40.50.4
Incentive Sensitization - Responses0.40.61.10.7-1.0-0.00.8
Incentive Sensitization - Breakpoint0.40.51.10.7-1.0-0.10.7
Sum of active levers in priming session hrs 5-61.00.91.80.9-0.9-1.3-0.5
Progressive ratio1.62.53.81.2-2.0-1.6-1.5
Food seeking constrained by brief footshock0.50.61.20.6-0.9-0.6-1.1
Seeking ratio, punishment vs. effort0.10.20.3-0.40.50.50.3
Retroperitoneal fat weight0.83.34.92.2-2.1-1.7-0.8
Reaction time number correct0.10.30.70.50.4-0.80.0
Reaction time mean minus median0.61.43.50.9-0.3-1.1-1.9
Reaction time mean minus median AUC0.82.14.11.6-0.7-1.2-2.0
Reaction time num false alarms1.01.42.4-1.01.31.60.7
Reaction time num false alarms AUC1.11.72.4-1.31.61.50.6
Reaction time trials correct on left0.10.30.70.50.4-0.80.0
Reaction time trials on left0.10.30.60.50.4-0.80.0
Reaction time mean0.40.71.7-0.2-0.5-0.9-1.3
Reaction time mean AUC0.20.30.8-0.5-0.2-0.5-0.9
Median of all reaction times0.20.40.6-0.8-0.3-0.6-0.6
Reaction time omissions0.20.40.9-0.50.50.9-0.0
Reaction time false alarm rate1.11.53.1-1.31.11.80.5
Reaction time premature initiation rate0.20.30.8-0.90.30.30.0
Reaction time premature initiations0.00.10.1-0.30.3-0.3-0.1
Std. dev. reaction times0.40.82.40.2-0.2-0.7-1.5
Reaction time trials completed0.10.30.60.50.4-0.80.0
Reaction time trials AUC0.10.20.50.30.5-0.70.1
Run reversals in cocaine runway, females0.30.30.60.30.40.50.7
Run reversals in cocaine runway, males1.51.51.90.8-1.4-1.2-1.3
Latency to leave start box in cocaine runway2.22.53.2-1.51.31.81.8
Latency to leave start box in cocaine runway, F2.02.23.5-1.21.41.91.4
Latency to leave start box in cocaine runway, M0.70.71.3-0.90.50.61.1
Std. dev. time between licks in bursts0.10.10.2-0.5-0.2-0.0-0.0
Total sessions with >9 infusions0.20.20.40.20.60.60.0
Short access day 1 total inactive lever presses0.20.30.60.20.3-0.6-0.8
Short access day 10 total inactive lever presses0.40.91.70.5-1.0-0.7-1.3
Short access day 1 total infusions0.30.41.2-0.41.10.60.0
Short access day 10 total infusions0.60.71.31.2-0.3-1.0-0.6
Short access total infusions0.10.10.20.40.5-0.0-0.2
Short access day 1 locomotion0.10.20.50.10.70.3-0.3
Short access day 10 total locomotion0.91.72.70.9-1.1-1.5-1.7
Short access total locomotion0.81.01.91.2-0.5-0.7-1.4
One hour access (0.3 mA shock)0.20.30.7-0.30.90.30.4
Compulsive drug intake5.05.97.0-2.22.32.52.7
One hour access (shock baseline)0.10.20.30.4-0.3-0.5-0.3
Social response proportion0.20.20.4-0.60.40.6-0.1
Social responses0.00.10.2-0.1-0.2-0.4-0.1
Social time0.30.40.9-0.50.30.5-1.0
Soleus weight1.13.25.42.3-1.8-1.1-1.7
Bone: stiffness0.00.00.1-0.3-0.2-0.1-0.1
Tibialis anterior weight1.03.47.02.6-1.3-1.2-1.8
Time to tail flick, vehicle, before self-admin0.10.10.3-0.1-0.1-0.3-0.6
Time to tail flick, vehicle, after self-admin0.81.01.91.4-1.2-0.6-0.7
Time to tail flick, test, before self-admin0.20.20.7-0.20.2-0.8-0.0
Time to tail flick, test, after self-admin0.20.30.60.2-0.8-0.60.1
Delta time to tail flick, vehicle, before/after SA0.40.41.01.0-0.6-0.1-0.4
Delta time to tail flick, test, before/after SA0.10.10.20.1-0.40.30.0
Tibia length0.10.40.91.0-0.4-0.5-0.3
Ambulatory time before self-admin1.21.82.51.3-1.1-1.3-1.6
Ambulatory time after self-admin0.00.00.1-0.00.40.00.0
Bone: tissue strength0.10.10.20.4-0.1-0.5-0.0
Total heroin consumption0.40.40.90.7-0.9-0.50.3
Bone: trabecular number2.03.36.3-2.51.21.61.6
Bone: trabecular spacing0.20.30.50.7-0.1-0.6-0.6
Bone: trabecular thickness0.20.30.80.40.30.30.9
Bone: trabecular tissue density1.72.64.12.0-1.4-1.5-1.4
Water consumed over 24 hours0.00.00.10.10.10.20.4
Number of responses in last shaping day0.70.82.20.4-0.2-0.9-1.5