LOC120093828

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 LHb gene expression LOC120093828 0.33 0.12 1.2e-06 0.24 0.26 0.23 0.28 1.7e-06 8.7e-07 3.2e-06 2.0e-07
2 pVTA gene expression LOC120093828 0.14 0.08 4.5e-08 0.08 0.1 0.1 0.1 9.8e-07 2.0e-08 2.0e-08 3.0e-08
3 OFC gene expression LOC120093828 0.2 0.11 8.2e-03 0.02 0.03 -0.01 0 9.7e-02 8.6e-02 9.5e-01 2.6e-01
4 NAcc gene expression LOC120093828 0.04 0.03 1.8e-04 0.02 0.03 0.02 0.02 6.1e-04 8.4e-05 1.4e-04 1.1e-03

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density2.23.74.5-2.1-2.1-1.3-2.1
Area under the delay curve0.40.40.9-0.1-0.4-1.0-0.8
BMI with tail3.512.015.74.03.72.83.3
BMI without tail2.06.26.82.52.52.42.6
Body weight1.46.19.52.62.43.11.6
Weight adjusted by age1.11.73.41.41.11.80.6
Bone surface2.23.95.1-1.8-2.2-1.6-2.3
Bone volume2.74.85.8-2.2-2.4-1.6-2.4
Breakpoint value in progressive ratio session0.20.30.90.90.50.10.0
Number of licking bursts0.00.00.1-0.3-0.3-0.0-0.0
Context. condit. distance diff. score2.02.43.01.51.41.61.7
Locomotion velocity, session 10.10.10.40.30.30.60.1
Locomotion distance, session 11.31.71.9-1.4-1.3-1.4-1.1
Locomotion velocity, session 20.20.20.70.20.20.8-0.0
Locomotion distance, session 20.50.81.5-0.7-1.0-1.2-0.2
Locomotion velocity, session 30.80.91.40.41.10.91.2
Locomotion distance, session 30.10.10.2-0.4-0.2-0.50.2
Stereotopy head waving bouts, day 33.44.04.9-2.0-2.2-1.9-1.9
Stereotopy head waving duration, day 31.21.52.0-1.4-1.2-0.8-1.4
Locomotion velocity, session 70.30.30.80.10.40.40.9
Locomotion distance, session 70.60.71.30.80.90.51.1
Stereotopy head waving bouts, day 71.51.72.7-1.5-1.2-0.6-1.6
Stereotopy head waving duration, day 71.72.03.5-1.9-1.3-0.6-1.5
Locomotion velocity, session 80.60.71.70.80.60.21.3
Locomotion distance, session 80.71.01.41.20.70.81.2
Degree of sensitization distance1.31.32.41.61.10.90.8
Degree of sensitization stereotypy0.10.20.4-0.6-0.30.2-0.3
Conditioned locomotion0.20.30.50.40.30.70.6
Cocaine response after cond. corrected1.51.82.51.61.40.61.6
Cocaine response after cond. not corrected3.54.15.42.32.11.22.3
Cocaine response before conditioning0.91.01.21.01.11.01.0
Saline control response0.30.40.80.90.60.6-0.2
Bone: connectivity density1.52.43.0-1.7-1.6-1.2-1.6
Bone: cortical apparent density2.43.25.0-2.2-2.0-1.1-1.7
Bone: cortical area0.30.41.2-0.2-0.60.5-1.1
Bone: cortical porosity0.10.10.50.70.10.1-0.2
Bone: cortical porosity0.60.71.81.30.70.60.0
Bone: cortical thickness0.30.60.9-0.7-0.90.3-1.0
Bone: cortical thickness0.30.31.1-0.20.31.00.1
Bone: cortical tissue density2.02.74.3-2.1-1.8-1.0-1.5
Condit. Reinf. active minus inactive responses0.10.10.10.40.20.3-0.4
Condit. Reinf. active-inactive response ratio0.20.20.5-0.5-0.40.1-0.7
Condit. Reinf. active responses0.40.41.01.00.50.60.4
Condit. Reinf. inactive responses1.11.42.51.60.90.51.4
Incentive salience index mean0.20.20.50.70.20.5-0.2
Condit. Reinf. lever presses0.20.30.70.80.20.8-0.0
Condit. Reinf. active minus inactive responses0.81.01.7-0.4-0.8-1.3-1.3
Condit. Reinf. active-inactive response ratio0.40.40.7-0.4-0.4-0.8-0.8
Condit. Reinf. active responses0.20.30.80.2-0.2-0.6-0.9
Condit. Reinf. inactive responses0.30.40.70.80.70.50.3
Condit. Reinf. lever presses0.20.20.40.70.40.5-0.3
Condit. Reinf. lever reinforcers received0.30.51.10.1-0.4-0.8-1.0
Conditioned reinforcement - actives0.20.30.50.70.60.6-0.3
Conditioned reinforcement - inactives0.30.51.5-0.20.01.2-0.7
Conditioned locomotion2.12.73.41.71.81.91.1
Patch foraging indifference point 0 sec0.20.40.50.70.70.7-0.0
Patch foraging indifference point AUC1.11.62.2-0.7-1.5-1.4-1.3
Delay disc. indifference point, 0s delay0.10.10.40.30.1-0.2-0.7
Delay disc. indifference point, 16s delay0.20.20.50.3-0.4-0.7-0.3
Delay disc. indifference point, 2s delay3.03.45.7-0.9-1.3-2.4-2.3
Delay disc. indifference point, 24s delay0.70.81.81.30.70.60.5
Delay disc. indifference point, 4s delay0.50.51.0-0.6-0.6-0.5-1.0
Delay disc. indifference point, 8s delay0.20.20.7-0.10.0-0.8-0.3
Indifference point function ln k2.33.95.81.72.42.01.7
Indifference point function log k2.33.95.81.72.42.01.7
Patch foraging total patch changes 0 sec0.10.20.30.50.60.5-0.2
Patch foraging total patch changes 12 sec0.50.61.9-0.2-0.4-0.5-1.4
Patch foraging total patch changes 18 sec2.23.45.4-1.6-1.8-1.5-2.3
Patch foraging total patch changes 24 sec1.22.03.4-1.2-1.3-1.1-1.9
Patch foraging total patch changes 6 sec0.20.31.00.0-0.6-0.1-1.0
Patch foraging time to switch 0 sec0.30.50.8-0.7-0.9-0.8-0.3
Patch foraging water rate 0 sec0.91.92.21.21.51.41.3
Patch foraging water rate 12 sec1.83.75.91.82.42.01.4
Patch foraging water rate 18 sec4.36.78.62.52.92.52.4
Patch foraging water rate 24 sec2.53.55.31.52.31.91.7
Patch foraging water rate 6 sec1.11.53.40.61.41.80.6
Seeking ratio, delayed vs. immediate footshock0.60.82.0-0.5-0.9-1.40.2
Distance traveled before self-admin1.01.31.9-1.3-1.4-1.1-0.6
Distance traveled after self-admin0.00.00.0-0.10.20.0-0.0
Extensor digitorum longus weight0.41.63.61.30.60.81.9
Bone: elastic displacement0.10.10.4-0.10.3-0.1-0.6
Bone: elastic work0.30.41.30.30.21.1-0.4
Bone: endosteal estimation0.10.10.30.2-0.00.5-0.5
Bone: endosteal perimeter0.40.82.20.3-0.6-0.6-1.5
Epididymis fat weight0.61.95.02.21.30.50.8
Delta time in closed arm before/after self-admin0.30.30.60.70.70.00.1
Delta time in open arm before/after self-admin0.10.10.2-0.4-0.3-0.0-0.3
Diff in mean of infusions in LGA sessions0.50.61.51.20.70.5-0.4
Delay discount exponential model param0.20.30.60.00.20.80.6
Extinction: sum of active levers before priming0.20.30.50.40.4-0.7-0.6
Active lever presses in extinction session 62.82.83.92.01.81.21.6
Bone: final force1.11.82.6-1.4-1.50.4-1.6
Bone: final moment1.11.82.5-1.5-1.50.4-1.6
Food consumed during 24 hour testing period1.62.23.01.51.51.71.1
Glucose0.10.20.4-0.2-0.3-0.4-0.6
Heart weight0.20.41.00.20.61.00.5
Delay discount hyperbolic model param0.50.51.10.30.51.00.8
Intermittent access intake day 1-15 change0.40.81.21.11.11.00.2
Intermittent access intake escalation0.40.91.31.01.11.1-0.1
Intermittent access intake escalation 20.70.81.31.20.80.9-0.6
Intermitt. access day 1 inactive lever presses0.20.92.40.20.41.6-1.0
Intermitt. access day 15 inactive lever presses1.63.37.11.21.82.71.2
Intermitt. access escalation Index0.10.10.3-0.40.3-0.5-0.3
Intermittent access day 1 total infusions0.20.30.70.30.80.50.2
Intermittent access day 15 total infusions0.40.71.20.61.11.0-0.2
Intermittent access terminal intake (last 3 days)1.31.72.81.51.71.30.1
Intermittent access total infusions0.50.61.30.61.10.7-0.2
Intermittent access day 1 locomotion0.30.41.0-0.30.50.5-1.0
Intermittent access day 15 total locomotion0.71.22.60.71.21.6-0.3
Intermittent access total locomotion1.01.22.20.81.51.40.2
Intermittent access standard deviation0.40.91.40.90.80.71.2
Left kidney weight3.616.522.54.74.24.42.6
Right kidney weight6.328.738.36.25.55.63.9
Cocaine induced anxiety1.92.74.02.02.00.81.5
Post-drug Anxiety3.53.75.92.21.90.72.4
Baseline Anxiety0.50.61.0-0.6-1.0-0.90.4
Tail length0.72.73.9-1.8-1.8-0.4-2.0
Length with tail0.31.23.3-0.4-0.60.9-1.8
Length without tail0.31.11.51.00.71.2-1.2
Times rat made contact with spout3.84.45.91.72.42.02.2
Lifetime Intake0.70.81.80.81.30.90.1
Liver weight, left0.00.10.10.30.00.30.1
Liver weight, right0.20.30.8-0.40.10.3-0.9
Locomotor activity0.10.20.30.40.50.0-0.5
Locomotor testing distance0.30.61.1-1.0-0.4-0.9-0.6
Locomotor testing rearing0.61.33.6-0.5-0.6-0.9-1.9
Locomotion in novel chamber1.62.04.60.81.02.11.5
Locomotion in novel chamber post-restriction0.40.60.9-0.6-0.6-0.9-1.0
Fecal boli incidents, locomotor time 10.20.20.4-0.7-0.3-0.3-0.6
Change in fecal boli incidents, locomotor task0.50.51.21.10.60.50.4
Time >=10cm from walls, locomotor time 10.10.10.40.7-0.10.10.0
Bouts of movement, locomotor time 10.10.10.40.1-0.20.7-0.1
Total resting periods, locomotor time 10.10.20.3-0.1-0.60.5-0.4
Rest time, locomotor task time 10.10.20.5-0.30.30.7-0.0
Distance moved, locomotor task time 10.10.10.30.50.3-0.40.2
Vertical activity count, locomotor time 10.10.10.30.50.60.1-0.0
Time >=10cm from walls, locomotor time 20.71.12.21.50.91.00.5
Bouts of movement, locomotor time 20.20.30.4-0.7-0.6-0.2-0.6
Total resting periods, locomotor time 20.30.50.8-0.8-0.7-0.3-0.9
Rest time, locomotor task time 20.10.10.2-0.3-0.1-0.2-0.5
Distance moved, locomotor task time 20.40.50.60.80.80.50.8
Vertical activity count, locomotor time 20.30.50.80.50.90.70.5
Light reinforcement 10.30.71.31.11.1-0.00.4
Light reinforcement 21.52.44.92.21.80.90.7
Bone: marrow area0.10.10.30.1-0.20.4-0.6
Bone: maximum diameter0.20.30.60.80.40.6-0.1
Bone: maximum force0.40.81.1-0.8-1.00.7-1.0
Bone: maximum moment0.50.81.1-0.9-1.10.6-0.9
Mean time between licks in bursts1.94.69.2-3.0-2.3-0.5-1.9
Mean num. licks in bursts0.81.32.21.11.50.91.0
Cd content in liver0.40.40.6-0.6-0.5-0.6-0.8
Co content in liver0.10.10.30.60.30.1-0.2
Cu content in liver0.20.20.6-0.80.10.20.6
Fe content in liver0.10.20.30.10.2-0.5-0.6
K content in liver0.50.51.1-0.5-0.8-1.0-0.1
Mg content in liver1.11.13.0-0.4-1.0-1.7-0.4
Mn content in liver0.30.30.9-0.2-0.6-0.9-0.1
Na content in liver7.07.58.6-2.7-2.9-2.8-2.4
Rb content in liver0.10.10.30.30.1-0.6-0.3
Se content in liver0.50.60.80.80.90.40.8
Sr content in liver1.21.02.4-1.5-0.9-0.4-0.9
Zn content in liver0.10.10.1-0.30.20.10.3
Bone: minimum diameter0.10.20.7-0.1-0.50.2-0.8
Time in familiar zone, hab. session 11.11.12.70.41.21.60.2
Time in novel zone, hab. session 11.41.42.7-0.8-1.3-1.6-0.7
Total zone transitions, hab. session 11.31.82.9-1.1-1.7-1.7-0.6
Total locomotion distance, hab. session 10.10.10.30.5-0.1-0.1-0.0
Locomotion velocity, hab. session 10.10.10.20.5-0.2-0.4-0.1
Time in familiar zone, hab. session 21.41.52.60.71.51.60.7
Time in novel zone, hab. session 21.61.72.7-1.0-1.5-1.6-0.7
Total zone transitions, hab. session 20.71.01.51.01.00.51.2
Total locomotion distance, hab. session 22.12.74.02.01.71.21.5
Locomotion velocity, hab. session 21.92.54.02.01.61.11.5
Novel to familiar place preference ratio0.30.30.9-0.9-0.5-0.3-0.1
Novelty place preference0.10.10.4-0.6-0.2-0.10.1
Time in novel zone, NPP test0.10.10.5-0.7-0.2-0.00.2
Total zone transitions, NPP test0.20.20.6-0.1-0.5-0.70.4
Total locomotion distance, NPP test0.20.30.70.80.3-0.20.5
Locomotion velocity, NPP test0.30.40.91.00.3-0.10.7
Intraocular pressure0.20.30.5-0.5-0.2-0.7-0.7
Delta distance traveled before/after self-admin3.03.24.61.62.12.01.2
Delta ambulatory time before/after self-admin1.72.12.91.31.71.61.2
Parametrial fat weight0.10.20.40.50.30.50.6
Pavlov. Cond. lever latency0.20.30.6-0.7-0.3-0.8-0.2
Pavlov. Cond. magazine entry latency0.70.91.2-1.1-0.9-0.7-1.1
Pavlov. Cond. change in total contacts0.90.91.3-0.9-1.1-0.9-0.9
Pavlov. Cond. index score0.20.30.4-0.5-0.6-0.4-0.5
Pavlov. Cond. latency score0.10.20.3-0.4-0.5-0.2-0.4
Pavlov. Cond. lever contacts0.10.10.20.50.10.40.1
Pavlov. Cond. magazine entry number0.70.91.10.90.71.01.0
Pavlov. Cond. intertrial magazine entries0.70.81.61.30.90.70.5
Pavlov. Cond. lever-magazine prob. diff.0.30.40.6-0.7-0.8-0.5-0.6
Pavlov. Cond. response bias0.00.00.10.00.0-0.1-0.3
Pavlov. Cond. lever latency0.81.11.5-1.2-1.1-1.0-0.8
Pavlov. Cond. magazine entry latency0.20.20.80.20.10.9-0.2
Pavlov. Cond. change in total contacts0.10.20.20.2-0.5-0.5-0.5
Pavlov. Cond. index score0.30.50.70.80.60.90.3
Pavlov. Cond. latency score0.70.91.31.10.81.10.6
Pavlov. Cond. lever contacts0.91.21.61.31.21.10.8
Pavlov. Cond. magazine entry number0.30.41.2-0.5-0.2-1.10.0
Pavlov. Cond. intertrial magazine entries0.81.22.51.01.60.41.0
Pavlov. Cond. lever-magazine prob. diff.0.40.50.90.90.61.00.3
Pavlov. Cond. response bias0.10.20.30.40.30.6-0.1
Time in closed arm before self-admin4.25.37.4-2.3-2.3-1.9-2.7
Time in closed arm after self-admin1.11.22.9-0.5-0.7-1.1-1.7
Time in open arm before self-admin0.60.62.00.70.20.21.4
Time in open arm after self-admin0.10.10.30.40.30.20.5
Bone: periosteal estimation0.20.41.1-0.0-0.40.5-1.0
Bone: periosteal perimeter0.30.51.60.3-0.30.2-1.3
Bone: post-yield work0.30.51.1-1.1-0.60.1-0.7
Progressive ratio test 1 active lever presses0.20.20.60.00.40.80.4
Progressive ratio test 1 breakpoint0.10.10.4-0.00.30.60.3
Progressive ratio test 1 inactive lever presses0.60.81.9-0.10.11.2-1.4
Progressive ratio test 2 active lever presses0.91.02.00.91.01.40.2
Progressive ratio test 2 breakpoint0.70.81.70.80.91.30.1
Progressive ratio test 2 inactive lever presses0.71.12.80.81.01.7-0.3
Incentive Sensitization - Responses0.50.61.10.90.81.0-0.1
Incentive Sensitization - Breakpoint0.40.61.10.80.71.0-0.2
Sum of active levers in priming session hrs 5-60.10.10.20.50.3-0.1-0.3
Progressive ratio0.30.51.11.00.50.30.8
Food seeking constrained by brief footshock4.65.67.62.72.51.52.5
Seeking ratio, punishment vs. effort0.00.00.10.10.3-0.10.1
Retroperitoneal fat weight1.46.29.53.12.62.12.0
Reaction time number correct0.10.30.5-0.7-0.4-0.4-0.5
Reaction time mean minus median0.00.00.1-0.0-0.10.2-0.3
Reaction time mean minus median AUC0.00.10.10.40.30.40.2
Reaction time num false alarms0.30.50.8-0.5-0.9-0.8-0.6
Reaction time num false alarms AUC0.00.10.1-0.1-0.3-0.30.1
Reaction time trials correct on left0.10.30.5-0.7-0.4-0.4-0.5
Reaction time trials on left0.20.30.5-0.7-0.5-0.4-0.5
Reaction time mean0.20.20.8-0.9-0.40.20.1
Reaction time mean AUC0.20.31.0-1.0-0.60.0-0.0
Median of all reaction times0.20.30.9-1.0-0.30.30.4
Reaction time omissions0.50.71.6-1.1-1.3-0.4-0.2
Reaction time false alarm rate0.10.10.20.0-0.4-0.40.0
Reaction time premature initiation rate0.60.82.31.50.80.40.0
Reaction time premature initiations0.10.20.70.80.40.1-0.1
Std. dev. reaction times0.10.10.4-0.2-0.00.60.2
Reaction time trials completed0.20.30.5-0.7-0.5-0.4-0.5
Reaction time trials AUC0.10.20.3-0.6-0.3-0.2-0.4
Run reversals in cocaine runway, females0.20.20.40.20.30.70.3
Run reversals in cocaine runway, males0.50.51.5-0.5-0.1-0.6-1.2
Latency to leave start box in cocaine runway3.03.45.01.61.71.82.2
Latency to leave start box in cocaine runway, F4.95.711.01.91.92.03.3
Latency to leave start box in cocaine runway, M0.10.10.40.10.30.3-0.6
Std. dev. time between licks in bursts0.71.02.11.40.80.90.6
Total sessions with >9 infusions0.91.12.30.51.21.50.4
Short access day 1 total inactive lever presses3.74.811.01.72.13.31.0
Short access day 10 total inactive lever presses1.63.97.12.21.82.70.6
Short access day 1 total infusions1.82.43.51.31.71.91.3
Short access day 10 total infusions1.52.03.61.21.91.70.4
Short access total infusions1.62.03.51.31.91.50.7
Short access day 1 locomotion1.31.73.40.91.41.90.7
Short access day 10 total locomotion0.71.43.50.61.31.90.2
Short access total locomotion1.01.23.00.41.21.7-0.2
One hour access (0.3 mA shock)0.91.11.81.11.31.0-0.5
Compulsive drug intake0.10.10.3-0.10.6-0.1-0.5
One hour access (shock baseline)0.30.50.90.90.80.8-0.2
Social response proportion0.60.70.9-0.8-0.6-0.8-1.0
Social responses0.40.50.8-0.6-0.5-0.9-0.7
Social time0.91.22.00.61.31.40.9
Soleus weight1.23.45.32.01.51.52.3
Bone: stiffness0.61.01.9-1.2-1.40.2-0.8
Tibialis anterior weight0.10.31.00.3-0.2-0.21.0
Time to tail flick, vehicle, before self-admin0.60.61.11.00.10.70.9
Time to tail flick, vehicle, after self-admin0.40.51.31.10.50.10.6
Time to tail flick, test, before self-admin0.00.00.1-0.2-0.20.1-0.2
Time to tail flick, test, after self-admin2.12.25.90.71.22.41.0
Delta time to tail flick, vehicle, before/after SA0.30.30.6-0.6-0.2-0.8-0.4
Delta time to tail flick, test, before/after SA0.70.82.20.30.61.50.6
Tibia length0.71.82.7-1.5-1.2-1.0-1.6
Ambulatory time before self-admin0.10.20.5-0.7-0.4-0.2-0.1
Ambulatory time after self-admin0.20.20.40.10.60.60.2
Bone: tissue strength0.20.20.3-0.6-0.50.40.0
Total heroin consumption0.30.30.80.90.5-0.10.2
Bone: trabecular number1.72.94.1-1.9-1.7-0.9-2.0
Bone: trabecular spacing3.85.17.12.62.11.32.7
Bone: trabecular thickness1.01.33.0-1.1-1.0-0.3-1.7
Bone: trabecular tissue density1.42.14.2-1.5-2.1-1.3-0.5
Water consumed over 24 hours0.70.91.31.21.00.80.9
Number of responses in last shaping day0.40.40.7-0.8-0.60.8-0.3