LOC120093732

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Brain gene expression LOC120093732 0.05 0.04 1.4e-06 0.07 0.07 0.07 0.07 3.9e-07 8.3e-07 3.9e-07 3.8e-07
2 Adipose gene expression LOC120093732 0.04 0.03 5.3e-06 0.05 0.04 0.04 0.05 2.1e-06 1.8e-05 2.0e-05 4.6e-06
3 Brain alternative TSS XR_005487406.1 0.04 0.04 8.5e-03 0.02 0.01 0.01 0.02 7.4e-03 1.3e-02 1.3e-02 6.6e-03
4 Brain alternative TSS XR_005487407.1 0.04 0.04 7.5e-03 0.02 0.01 0.01 0.02 7.3e-03 1.9e-02 1.7e-02 6.2e-03

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density7.712.918.13.8-4.23.1-3.1
Area under the delay curve1.11.11.81.3-1.10.9-0.9
BMI with tail4.213.718.64.3-3.83.3-3.3
BMI without tail0.20.30.50.7-0.50.5-0.5
Body weight6.728.333.55.8-5.55.0-5.0
Weight adjusted by age3.43.84.51.8-1.82.1-2.1
Bone surface9.516.721.14.3-4.63.7-3.7
Bone volume6.811.615.53.5-3.93.1-3.0
Breakpoint value in progressive ratio session0.10.10.20.2-0.50.4-0.4
Number of licking bursts0.10.10.2-0.50.10.3-0.4
Context. condit. distance diff. score0.50.60.70.8-0.90.7-0.7
Locomotion velocity, session 10.50.60.9-0.61.0-0.70.7
Locomotion distance, session 13.64.65.4-1.92.0-2.32.3
Locomotion velocity, session 20.30.40.6-0.40.4-0.80.8
Locomotion distance, session 23.04.24.7-2.01.9-2.22.2
Locomotion velocity, session 33.64.24.7-2.11.8-2.22.2
Locomotion distance, session 35.25.76.2-2.52.3-2.42.4
Stereotopy head waving bouts, day 31.11.31.81.0-0.91.3-1.3
Stereotopy head waving duration, day 30.40.50.70.6-0.50.8-0.8
Locomotion velocity, session 70.00.00.0-0.20.1-0.10.1
Locomotion distance, session 70.81.11.5-1.21.1-0.90.9
Stereotopy head waving bouts, day 71.21.41.91.0-0.91.4-1.4
Stereotopy head waving duration, day 71.62.02.31.4-1.21.5-1.5
Locomotion velocity, session 80.10.10.20.4-0.30.1-0.1
Locomotion distance, session 81.42.02.7-1.31.1-1.61.6
Degree of sensitization distance0.90.91.11.0-0.81.0-1.0
Degree of sensitization stereotypy0.60.60.90.7-0.50.9-0.9
Conditioned locomotion0.20.20.5-0.10.10.7-0.7
Cocaine response after cond. corrected0.30.30.60.20.2-0.70.7
Cocaine response after cond. not corrected1.41.52.2-0.91.0-1.41.5
Cocaine response before conditioning4.25.07.8-2.82.2-1.91.9
Saline control response0.00.00.2-0.4-0.0-0.00.0
Bone: connectivity density5.18.011.73.1-3.42.4-2.3
Bone: cortical apparent density0.20.30.5-0.70.7-0.40.4
Bone: cortical area9.714.616.54.0-4.13.6-3.6
Bone: cortical porosity1.41.62.6-1.61.5-0.90.8
Bone: cortical porosity2.02.13.3-1.81.8-1.01.0
Bone: cortical thickness4.06.57.82.7-2.82.3-2.3
Bone: cortical thickness0.20.20.40.5-0.60.4-0.4
Bone: cortical tissue density0.40.50.7-0.80.9-0.50.5
Condit. Reinf. active minus inactive responses0.20.30.4-0.40.3-0.60.7
Condit. Reinf. active-inactive response ratio0.00.10.10.3-0.3-0.10.1
Condit. Reinf. active responses0.81.01.1-0.90.9-1.01.0
Condit. Reinf. inactive responses2.42.93.7-1.91.8-1.51.5
Incentive salience index mean0.00.00.10.1-0.30.0-0.0
Condit. Reinf. lever presses0.30.30.60.5-0.70.6-0.5
Condit. Reinf. active minus inactive responses0.00.00.0-0.20.0-0.0-0.0
Condit. Reinf. active-inactive response ratio0.30.30.3-0.50.4-0.60.6
Condit. Reinf. active responses0.20.20.4-0.60.5-0.30.3
Condit. Reinf. inactive responses0.60.71.3-1.11.0-0.60.5
Condit. Reinf. lever presses0.00.00.1-0.20.1-0.20.1
Condit. Reinf. lever reinforcers received0.50.60.9-1.00.8-0.70.7
Conditioned reinforcement - actives1.31.31.7-1.31.1-1.11.1
Conditioned reinforcement - inactives1.41.61.7-1.21.3-1.31.3
Conditioned locomotion0.20.20.4-0.60.5-0.20.2
Patch foraging indifference point 0 sec1.42.22.7-1.41.3-1.61.6
Patch foraging indifference point AUC0.10.20.3-0.60.5-0.20.2
Delay disc. indifference point, 0s delay1.71.82.11.4-1.11.4-1.5
Delay disc. indifference point, 16s delay1.61.61.81.3-1.31.2-1.2
Delay disc. indifference point, 2s delay0.91.01.11.1-0.91.1-1.0
Delay disc. indifference point, 24s delay1.61.51.81.3-1.31.2-1.2
Delay disc. indifference point, 4s delay0.20.20.50.7-0.60.1-0.1
Delay disc. indifference point, 8s delay2.72.84.02.0-1.71.5-1.5
Indifference point function ln k3.65.06.12.5-2.32.1-2.1
Indifference point function log k3.65.06.12.5-2.32.1-2.1
Patch foraging total patch changes 0 sec1.22.02.3-1.41.3-1.51.5
Patch foraging total patch changes 12 sec1.21.62.1-1.41.2-1.21.2
Patch foraging total patch changes 18 sec2.63.45.0-2.21.9-1.61.6
Patch foraging total patch changes 24 sec0.70.81.5-1.21.0-0.60.6
Patch foraging total patch changes 6 sec2.23.23.8-2.01.6-1.81.8
Patch foraging time to switch 0 sec2.84.35.5-2.42.2-1.91.9
Patch foraging water rate 0 sec4.06.47.62.8-2.52.4-2.4
Patch foraging water rate 12 sec3.75.65.82.3-2.42.4-2.4
Patch foraging water rate 18 sec0.60.71.01.0-0.90.8-0.8
Patch foraging water rate 24 sec3.24.54.82.2-2.02.2-2.2
Patch foraging water rate 6 sec4.26.16.72.6-2.52.4-2.4
Seeking ratio, delayed vs. immediate footshock0.10.10.30.6-0.3-0.00.1
Distance traveled before self-admin0.60.71.0-1.01.0-0.60.6
Distance traveled after self-admin0.20.20.3-0.30.3-0.60.6
Extensor digitorum longus weight5.220.323.14.8-4.64.3-4.3
Bone: elastic displacement4.45.06.0-2.42.3-2.12.0
Bone: elastic work0.10.10.3-0.50.2-0.10.1
Bone: endosteal estimation6.814.815.23.9-3.93.8-3.8
Bone: endosteal perimeter6.413.314.13.6-3.83.6-3.6
Epididymis fat weight0.30.71.21.1-0.90.6-0.6
Delta time in closed arm before/after self-admin0.10.10.20.3-0.4-0.30.3
Delta time in open arm before/after self-admin3.53.44.5-2.02.1-1.61.6
Diff in mean of infusions in LGA sessions0.80.91.11.0-1.00.8-0.8
Delay discount exponential model param0.90.91.5-1.21.0-0.80.8
Extinction: sum of active levers before priming0.40.40.50.6-0.50.7-0.7
Active lever presses in extinction session 60.30.30.70.6-0.80.2-0.2
Bone: final force8.814.218.14.0-4.33.4-3.3
Bone: final moment8.714.218.14.1-4.33.3-3.3
Food consumed during 24 hour testing period0.70.91.71.1-1.30.6-0.5
Glucose0.30.40.50.5-0.50.7-0.7
Heart weight0.00.10.1-0.10.2-0.30.3
Delay discount hyperbolic model param0.80.91.4-1.21.0-0.80.7
Intermittent access intake day 1-15 change1.21.21.4-0.91.0-1.21.2
Intermittent access intake escalation0.90.91.2-0.70.9-1.11.1
Intermittent access intake escalation 21.31.31.6-1.01.0-1.31.3
Intermitt. access day 1 inactive lever presses2.42.53.9-2.01.8-1.31.2
Intermitt. access day 15 inactive lever presses0.70.71.1-1.01.0-0.70.7
Intermitt. access escalation Index0.10.10.2-0.40.3-0.30.3
Intermittent access day 1 total infusions1.21.41.5-1.11.2-1.21.2
Intermittent access day 15 total infusions2.02.22.3-1.51.5-1.51.5
Intermittent access terminal intake (last 3 days)2.12.32.4-1.51.5-1.51.5
Intermittent access total infusions2.02.32.4-1.51.5-1.51.5
Intermittent access day 1 locomotion0.40.50.9-1.00.9-0.30.3
Intermittent access day 15 total locomotion0.40.51.1-1.00.7-0.30.3
Intermittent access total locomotion1.41.63.0-1.71.5-0.90.8
Intermittent access standard deviation0.60.70.8-0.60.8-0.90.9
Left kidney weight0.20.51.21.1-0.80.1-0.1
Right kidney weight2.87.79.13.0-2.82.6-2.6
Cocaine induced anxiety1.21.31.51.0-1.11.2-1.2
Post-drug Anxiety4.24.75.22.1-2.02.3-2.3
Baseline Anxiety1.11.11.61.2-1.11.0-1.0
Tail length0.00.00.1-0.40.10.0-0.0
Length with tail2.07.27.92.7-2.82.6-2.6
Length without tail6.113.317.34.2-3.93.3-3.2
Times rat made contact with spout0.10.10.20.1-0.1-0.40.4
Lifetime Intake1.61.81.9-1.41.4-1.31.3
Liver weight, left1.93.13.41.8-1.81.7-1.7
Liver weight, right2.13.53.92.0-1.91.8-1.8
Locomotor activity0.61.01.3-1.11.1-0.90.9
Locomotor testing distance2.03.34.1-2.01.9-1.71.6
Locomotor testing rearing1.42.23.4-1.81.5-1.31.2
Locomotion in novel chamber0.80.91.11.0-0.81.0-1.0
Locomotion in novel chamber post-restriction0.40.50.70.8-0.60.7-0.7
Fecal boli incidents, locomotor time 11.92.03.1-0.91.2-1.71.8
Change in fecal boli incidents, locomotor task0.90.81.10.9-0.71.0-1.0
Time >=10cm from walls, locomotor time 10.40.40.70.8-0.70.5-0.5
Bouts of movement, locomotor time 10.10.10.30.4-0.50.2-0.2
Total resting periods, locomotor time 10.10.10.1-0.20.0-0.30.4
Rest time, locomotor task time 10.20.20.2-0.40.4-0.40.5
Distance moved, locomotor task time 10.00.00.1-0.30.3-0.10.0
Vertical activity count, locomotor time 10.80.91.41.2-1.00.7-0.7
Time >=10cm from walls, locomotor time 20.30.30.5-0.50.7-0.60.6
Bouts of movement, locomotor time 23.43.73.91.9-1.82.0-2.0
Total resting periods, locomotor time 23.84.04.22.0-1.92.0-2.1
Rest time, locomotor task time 20.20.20.30.5-0.60.4-0.4
Distance moved, locomotor task time 20.40.40.7-0.60.9-0.50.5
Vertical activity count, locomotor time 20.10.20.30.5-0.30.4-0.4
Light reinforcement 11.83.25.2-2.32.0-1.41.3
Light reinforcement 20.60.91.2-1.11.0-0.80.8
Bone: marrow area6.814.715.23.9-3.93.8-3.8
Bone: maximum diameter4.58.28.93.0-2.92.8-2.8
Bone: maximum force12.020.825.04.7-5.04.3-4.2
Bone: maximum moment11.820.424.74.7-5.04.2-4.2
Mean time between licks in bursts0.30.40.5-0.70.7-0.50.5
Mean num. licks in bursts0.50.61.10.10.2-1.01.1
Cd content in liver0.30.30.3-0.50.6-0.60.6
Co content in liver0.00.00.1-0.30.1-0.10.1
Cu content in liver1.21.41.81.3-1.31.0-1.0
Fe content in liver0.10.10.1-0.20.2-0.30.3
K content in liver0.70.71.41.2-0.90.6-0.6
Mg content in liver0.00.00.00.10.00.0-0.0
Mn content in liver0.10.10.10.3-0.20.3-0.3
Na content in liver0.00.00.10.20.20.1-0.1
Rb content in liver0.00.00.00.10.20.0-0.0
Se content in liver0.40.50.6-0.70.7-0.80.8
Sr content in liver1.00.91.21.1-0.91.0-1.0
Zn content in liver0.40.50.9-0.60.9-0.60.6
Bone: minimum diameter8.415.716.53.9-4.14.0-4.0
Time in familiar zone, hab. session 10.60.60.9-0.40.7-0.90.9
Time in novel zone, hab. session 10.80.71.20.3-0.71.1-1.1
Total zone transitions, hab. session 10.20.30.6-0.80.4-0.50.5
Total locomotion distance, hab. session 10.10.10.2-0.40.2-0.20.3
Locomotion velocity, hab. session 10.00.00.1-0.30.0-0.10.1
Time in familiar zone, hab. session 20.10.10.20.3-0.40.0-0.0
Time in novel zone, hab. session 20.10.10.2-0.20.50.3-0.3
Total zone transitions, hab. session 20.30.40.6-0.40.3-0.80.8
Total locomotion distance, hab. session 20.30.40.5-0.50.5-0.70.7
Locomotion velocity, hab. session 20.10.20.3-0.20.3-0.60.6
Novel to familiar place preference ratio2.32.32.91.1-1.61.7-1.7
Novelty place preference1.81.82.30.8-1.41.5-1.5
Time in novel zone, NPP test1.51.62.20.6-1.21.5-1.5
Total zone transitions, NPP test1.41.92.4-1.21.2-1.51.5
Total locomotion distance, NPP test2.33.23.6-1.91.7-1.81.8
Locomotion velocity, NPP test1.41.92.1-1.41.2-1.41.5
Intraocular pressure7.610.513.6-3.73.5-2.92.9
Delta distance traveled before/after self-admin0.10.10.20.4-0.2-0.20.3
Delta ambulatory time before/after self-admin0.00.00.10.3-0.2-0.20.2
Parametrial fat weight1.83.44.0-1.41.9-2.02.0
Pavlov. Cond. lever latency0.00.00.10.10.20.0-0.0
Pavlov. Cond. magazine entry latency0.10.10.2-0.1-0.0-0.40.4
Pavlov. Cond. change in total contacts0.00.00.10.2-0.30.2-0.2
Pavlov. Cond. index score0.10.20.30.3-0.50.4-0.4
Pavlov. Cond. latency score0.10.10.20.2-0.50.3-0.3
Pavlov. Cond. lever contacts0.20.20.4-0.60.3-0.40.4
Pavlov. Cond. magazine entry number0.00.00.00.1-0.00.2-0.2
Pavlov. Cond. intertrial magazine entries0.50.60.7-0.70.8-0.80.9
Pavlov. Cond. lever-magazine prob. diff.0.40.50.80.7-0.90.6-0.6
Pavlov. Cond. response bias0.10.10.2-0.20.1-0.40.4
Pavlov. Cond. lever latency0.00.00.10.2-0.1-0.00.0
Pavlov. Cond. magazine entry latency0.50.60.80.6-0.90.8-0.8
Pavlov. Cond. change in total contacts1.11.52.01.2-1.41.2-1.1
Pavlov. Cond. index score0.30.40.50.4-0.70.7-0.7
Pavlov. Cond. latency score0.40.50.50.5-0.70.7-0.7
Pavlov. Cond. lever contacts0.10.20.4-0.60.4-0.40.4
Pavlov. Cond. magazine entry number1.92.32.7-1.21.6-1.71.6
Pavlov. Cond. intertrial magazine entries4.05.26.1-2.02.5-2.32.3
Pavlov. Cond. lever-magazine prob. diff.0.60.81.00.6-0.91.0-1.0
Pavlov. Cond. response bias0.00.10.2-0.50.2-0.10.1
Time in closed arm before self-admin1.61.82.31.1-1.31.5-1.5
Time in closed arm after self-admin0.50.50.60.6-0.80.7-0.7
Time in open arm before self-admin1.21.31.61.1-1.31.1-1.1
Time in open arm after self-admin0.10.20.3-0.50.5-0.20.2
Bone: periosteal estimation11.223.225.15.0-5.04.6-4.6
Bone: periosteal perimeter9.215.417.84.1-4.23.7-3.6
Bone: post-yield work7.710.510.63.3-3.23.2-3.2
Progressive ratio test 1 active lever presses2.62.73.4-1.91.7-1.51.5
Progressive ratio test 1 breakpoint2.22.33.0-1.71.6-1.41.4
Progressive ratio test 1 inactive lever presses1.92.12.9-1.71.5-1.31.3
Progressive ratio test 2 active lever presses1.11.11.6-1.31.2-0.90.8
Progressive ratio test 2 breakpoint1.51.72.4-1.51.5-1.11.1
Progressive ratio test 2 inactive lever presses2.12.42.9-1.71.7-1.41.4
Incentive Sensitization - Responses0.10.10.10.3-0.20.4-0.4
Incentive Sensitization - Breakpoint0.00.00.10.1-0.00.2-0.3
Sum of active levers in priming session hrs 5-60.20.20.3-0.50.5-0.30.3
Progressive ratio0.10.10.10.1-0.0-0.40.4
Food seeking constrained by brief footshock0.00.00.00.00.1-0.20.2
Seeking ratio, punishment vs. effort0.10.10.10.00.00.3-0.4
Retroperitoneal fat weight0.41.42.1-0.61.0-1.41.5
Reaction time number correct0.50.70.70.8-0.90.8-0.8
Reaction time mean minus median9.312.413.3-3.43.4-3.63.6
Reaction time mean minus median AUC6.88.99.8-2.82.8-3.13.1
Reaction time num false alarms2.33.13.2-1.71.8-1.81.8
Reaction time num false alarms AUC3.65.05.3-2.12.2-2.32.3
Reaction time trials correct on left0.50.70.70.8-0.90.8-0.8
Reaction time trials on left0.30.40.50.7-0.70.7-0.6
Reaction time mean0.60.80.9-0.90.9-0.90.9
Reaction time mean AUC0.40.60.6-0.70.8-0.70.8
Median of all reaction times0.00.00.10.0-0.20.3-0.2
Reaction time omissions9.713.314.8-3.93.7-3.53.5
Reaction time false alarm rate2.83.94.2-1.92.0-2.12.1
Reaction time premature initiation rate4.15.46.5-2.52.5-2.12.1
Reaction time premature initiations2.43.34.1-2.02.0-1.61.6
Std. dev. reaction times6.59.19.7-3.02.9-3.13.1
Reaction time trials completed0.30.40.50.7-0.70.7-0.6
Reaction time trials AUC0.71.01.11.0-1.01.0-1.0
Run reversals in cocaine runway, females0.10.10.2-0.50.3-0.10.1
Run reversals in cocaine runway, males1.31.21.7-1.31.1-1.01.0
Latency to leave start box in cocaine runway0.00.00.0-0.10.10.0-0.0
Latency to leave start box in cocaine runway, F1.41.52.3-1.51.3-1.01.0
Latency to leave start box in cocaine runway, M1.71.62.51.6-1.31.1-1.0
Std. dev. time between licks in bursts0.60.81.1-1.11.0-0.70.7
Total sessions with >9 infusions0.20.20.4-0.50.6-0.40.4
Short access day 1 total inactive lever presses0.80.91.2-1.01.1-0.80.8
Short access day 10 total inactive lever presses0.30.30.6-0.80.7-0.30.2
Short access day 1 total infusions0.00.00.10.2-0.10.2-0.1
Short access day 10 total infusions0.50.60.7-0.70.7-0.80.9
Short access total infusions0.10.10.1-0.30.3-0.30.3
Short access day 1 locomotion0.20.20.30.2-0.30.5-0.5
Short access day 10 total locomotion0.20.20.3-0.40.40.5-0.5
Short access total locomotion0.10.10.1-0.40.30.3-0.3
One hour access (0.3 mA shock)0.20.20.3-0.50.3-0.50.5
Compulsive drug intake0.50.50.60.8-0.80.6-0.6
One hour access (shock baseline)0.00.00.0-0.10.0-0.10.1
Social response proportion0.30.40.5-0.70.6-0.50.5
Social responses7.910.212.5-3.53.3-2.92.9
Social time0.40.60.8-0.70.5-0.90.9
Soleus weight0.72.12.31.5-1.31.5-1.5
Bone: stiffness14.923.627.45.1-5.24.5-4.5
Tibialis anterior weight2.17.28.12.8-2.62.6-2.6
Time to tail flick, vehicle, before self-admin1.31.41.6-1.20.9-1.31.3
Time to tail flick, vehicle, after self-admin0.40.40.70.2-0.40.8-0.8
Time to tail flick, test, before self-admin0.60.60.9-0.90.9-0.60.6
Time to tail flick, test, after self-admin0.10.10.20.4-0.30.4-0.4
Delta time to tail flick, vehicle, before/after SA0.50.50.70.6-0.50.8-0.8
Delta time to tail flick, test, before/after SA0.50.40.60.7-0.80.5-0.5
Tibia length7.120.021.64.5-4.74.4-4.4
Ambulatory time before self-admin2.82.94.0-2.01.9-1.51.4
Ambulatory time after self-admin1.11.31.5-1.21.2-1.01.0
Bone: tissue strength0.60.60.70.6-0.90.8-0.8
Total heroin consumption3.33.94.61.6-1.92.1-2.1
Bone: trabecular number3.55.59.32.6-3.01.7-1.7
Bone: trabecular spacing1.01.22.7-1.21.7-0.70.6
Bone: trabecular thickness0.30.30.5-0.50.1-0.70.7
Bone: trabecular tissue density0.00.10.2-0.50.20.1-0.1
Water consumed over 24 hours0.00.00.10.2-0.2-0.20.2
Number of responses in last shaping day0.50.50.60.7-0.70.8-0.8