LOC120093706

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Brain gene expression LOC120093706 0.05 0.03 6.2e-04 0 0.03 0.01 0.03 1.8e-01 9.5e-04 1.3e-02 2.0e-03
2 pVTA gene expression LOC120093706 0.06 0.04 6.7e-03 0.06 0.05 0.02 0.05 1.6e-03 3.3e-03 4.4e-02 2.5e-03
3 Adipose gene expression LOC120093706 0.11 0.05 2.2e-11 0.05 0.1 0.1 0.1 1.8e-06 1.8e-11 5.7e-11 3.2e-11

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
Bone: apparent density0.50.81.90.6-1.40.4
Area under the delay curve1.41.52.31.3-1.50.6
BMI with tail1.13.67.80.62.81.6
BMI without tail1.12.44.3-1.42.1-0.8
Body weight0.72.85.3-1.62.3-0.6
Weight adjusted by age0.30.30.8-0.30.90.4
Bone surface0.20.30.70.2-0.90.2
Bone volume0.10.20.70.1-0.8-0.0
Breakpoint value in progressive ratio session0.91.01.71.3-0.21.2
Number of licking bursts0.81.01.3-0.9-0.9-1.1
Context. condit. distance diff. score1.01.23.0-0.71.7-0.3
Locomotion velocity, session 11.41.52.6-1.60.8-1.1
Locomotion distance, session 10.60.81.2-1.0-0.4-1.1
Locomotion velocity, session 22.22.63.3-1.71.8-1.3
Locomotion distance, session 20.20.30.50.7-0.20.6
Locomotion velocity, session 36.27.29.6-3.12.0-2.8
Locomotion distance, session 32.22.44.0-1.80.2-2.0
Stereotopy head waving bouts, day 30.91.12.8-0.71.7-0.2
Stereotopy head waving duration, day 31.61.95.0-0.92.2-0.2
Locomotion velocity, session 72.72.93.7-1.71.9-1.5
Locomotion distance, session 70.40.60.9-0.80.3-0.9
Stereotopy head waving bouts, day 71.72.03.2-1.31.8-1.0
Stereotopy head waving duration, day 70.80.91.3-1.01.1-0.8
Locomotion velocity, session 82.53.08.4-0.72.9-0.0
Locomotion distance, session 80.60.91.6-0.81.3-0.7
Degree of sensitization distance1.01.01.60.90.71.2
Degree of sensitization stereotypy0.70.81.2-0.91.1-0.7
Conditioned locomotion0.00.00.1-0.20.3-0.1
Cocaine response after cond. corrected0.40.40.6-0.6-0.8-0.5
Cocaine response after cond. not corrected1.01.11.5-1.1-0.8-1.2
Cocaine response before conditioning0.30.40.8-0.6-0.3-0.9
Saline control response0.20.20.6-0.2-0.8-0.2
Bone: connectivity density0.20.31.0-0.1-1.0-0.1
Bone: cortical apparent density0.50.60.80.9-0.80.6
Bone: cortical area0.40.61.10.21.10.8
Bone: cortical porosity0.40.40.70.40.60.9
Bone: cortical porosity0.40.50.80.50.60.9
Bone: cortical thickness0.61.01.61.1-0.21.3
Bone: cortical thickness1.41.62.70.91.21.6
Bone: cortical tissue density0.40.50.70.8-0.70.5
Condit. Reinf. active minus inactive responses0.40.41.00.3-1.00.2
Condit. Reinf. active-inactive response ratio0.60.61.60.5-1.30.3
Condit. Reinf. active responses0.60.82.0-0.2-1.4-0.6
Condit. Reinf. inactive responses0.70.81.3-0.9-0.7-1.1
Incentive salience index mean0.40.50.5-0.7-0.7-0.6
Condit. Reinf. lever presses1.31.83.2-1.80.0-1.5
Condit. Reinf. active minus inactive responses0.20.20.40.40.20.7
Condit. Reinf. active-inactive response ratio0.10.10.10.2-0.40.4
Condit. Reinf. active responses0.50.61.20.31.10.8
Condit. Reinf. inactive responses1.11.43.7-0.01.90.6
Condit. Reinf. lever presses0.30.41.00.01.00.3
Condit. Reinf. lever reinforcers received0.30.50.70.40.80.8
Conditioned reinforcement - actives1.11.11.4-1.1-0.8-1.2
Conditioned reinforcement - inactives0.10.20.3-0.5-0.1-0.4
Conditioned locomotion0.60.71.3-1.10.6-0.7
Patch foraging indifference point 0 sec0.20.30.70.3-0.90.2
Patch foraging indifference point AUC0.00.10.10.3-0.3-0.0
Delay disc. indifference point, 0s delay0.00.00.10.20.20.2
Delay disc. indifference point, 16s delay1.81.83.41.3-1.90.7
Delay disc. indifference point, 2s delay0.40.50.90.9-0.40.7
Delay disc. indifference point, 24s delay0.80.81.21.1-0.01.0
Delay disc. indifference point, 4s delay1.51.62.51.6-1.20.9
Delay disc. indifference point, 8s delay1.41.42.11.3-1.50.6
Indifference point function ln k0.91.21.9-1.41.1-0.7
Indifference point function log k0.91.21.9-1.41.1-0.7
Patch foraging total patch changes 0 sec0.20.41.00.3-1.00.1
Patch foraging total patch changes 12 sec0.10.10.20.40.30.4
Patch foraging total patch changes 18 sec0.40.51.40.0-1.2-0.2
Patch foraging total patch changes 24 sec0.10.10.2-0.2-0.1-0.4
Patch foraging total patch changes 6 sec0.60.91.31.0-1.10.6
Patch foraging time to switch 0 sec0.20.30.40.60.70.5
Patch foraging water rate 0 sec0.00.10.20.00.40.2
Patch foraging water rate 12 sec0.60.91.2-1.1-0.7-1.1
Patch foraging water rate 18 sec0.20.30.6-0.4-0.8-0.3
Patch foraging water rate 24 sec0.00.10.10.20.30.3
Patch foraging water rate 6 sec0.71.11.7-1.1-0.6-1.3
Seeking ratio, delayed vs. immediate footshock0.60.60.90.9-0.90.5
Distance traveled before self-admin0.60.70.9-0.90.7-0.8
Distance traveled after self-admin0.20.20.7-0.10.80.2
Extensor digitorum longus weight0.10.40.6-0.70.8-0.3
Bone: elastic displacement0.60.71.0-1.0-0.1-1.0
Bone: elastic work1.01.33.7-0.31.90.3
Bone: endosteal estimation1.02.15.3-1.02.3-0.4
Bone: endosteal perimeter1.22.65.1-1.52.3-0.7
Epididymis fat weight0.00.10.2-0.5-0.1-0.3
Delta time in closed arm before/after self-admin0.60.50.90.80.21.0
Delta time in open arm before/after self-admin2.62.54.1-1.80.0-2.0
Diff in mean of infusions in LGA sessions2.22.44.01.7-0.52.0
Delay discount exponential model param1.41.42.3-1.31.5-0.6
Extinction: sum of active levers before priming1.21.21.71.3-0.81.1
Active lever presses in extinction session 61.71.72.51.31.01.6
Bone: final force1.82.94.81.61.12.2
Bone: final moment2.23.55.91.81.22.4
Food consumed during 24 hour testing period1.01.33.2-0.71.80.4
Glucose0.40.60.70.8-0.70.9
Heart weight0.40.61.00.90.01.0
Delay discount hyperbolic model param1.21.21.9-1.31.4-0.6
Intermittent access intake day 1-15 change0.20.20.4-0.3-0.6-0.1
Intermittent access intake escalation0.10.10.2-0.5-0.4-0.2
Intermittent access intake escalation 20.50.50.50.6-0.70.7
Intermitt. access day 1 inactive lever presses1.51.61.71.31.21.3
Intermitt. access day 15 inactive lever presses1.41.52.51.01.01.6
Intermitt. access escalation Index0.10.10.1-0.1-0.30.2
Intermittent access day 1 total infusions1.51.73.0-1.70.7-1.3
Intermittent access day 15 total infusions1.01.12.2-1.50.3-1.0
Intermittent access terminal intake (last 3 days)0.90.91.9-1.40.7-0.7
Intermittent access total infusions1.01.12.2-1.50.8-0.8
Intermittent access day 1 locomotion1.61.72.8-1.7-0.1-1.5
Intermittent access day 15 total locomotion2.42.54.3-2.10.6-1.7
Intermittent access total locomotion1.01.11.8-1.30.7-1.0
Intermittent access standard deviation0.30.30.40.40.70.6
Left kidney weight4.913.737.8-1.86.10.2
Right kidney weight4.613.037.2-1.16.10.8
Cocaine induced anxiety2.52.93.51.41.91.8
Post-drug Anxiety5.05.68.12.61.42.8
Baseline Anxiety0.70.82.20.3-1.50.2
Tail length1.64.87.6-2.6-0.3-2.8
Length with tail0.83.15.2-2.30.2-2.0
Length without tail0.10.10.30.20.20.6
Times rat made contact with spout0.70.81.4-1.20.5-0.8
Lifetime Intake1.61.83.0-1.71.1-1.1
Liver weight, left0.20.40.60.30.80.6
Liver weight, right1.93.14.6-2.20.7-2.0
Locomotor activity1.82.83.7-1.91.9-1.1
Locomotor testing distance0.40.61.3-1.10.4-0.6
Locomotor testing rearing0.91.42.4-1.51.0-1.0
Locomotion in novel chamber3.44.26.2-2.4-0.8-2.5
Locomotion in novel chamber post-restriction0.10.10.10.30.00.3
Fecal boli incidents, locomotor time 10.10.10.4-0.10.6-0.2
Change in fecal boli incidents, locomotor task0.50.50.6-0.7-0.7-0.8
Time >=10cm from walls, locomotor time 10.50.51.10.31.00.6
Bouts of movement, locomotor time 10.40.40.50.40.70.7
Total resting periods, locomotor time 11.11.22.11.10.51.4
Rest time, locomotor task time 10.40.51.3-0.01.10.2
Distance moved, locomotor task time 10.00.00.1-0.10.4-0.0
Vertical activity count, locomotor time 10.30.40.50.6-0.40.7
Time >=10cm from walls, locomotor time 20.60.61.30.8-0.11.2
Bouts of movement, locomotor time 21.51.73.01.7-0.11.4
Total resting periods, locomotor time 21.51.63.01.7-0.11.4
Rest time, locomotor task time 21.51.72.5-1.0-1.3-1.6
Distance moved, locomotor task time 20.91.02.8-0.31.70.3
Vertical activity count, locomotor time 20.80.82.00.11.40.7
Light reinforcement 11.01.83.0-1.70.4-1.5
Light reinforcement 20.91.22.3-1.01.5-0.5
Bone: marrow area0.92.15.2-0.92.3-0.3
Bone: maximum diameter1.73.18.6-0.82.90.3
Bone: maximum force2.23.75.51.71.72.3
Bone: maximum moment2.64.46.61.91.82.6
Mean time between licks in bursts0.60.81.8-0.4-1.4-0.6
Mean num. licks in bursts0.70.81.80.31.30.8
Cd content in liver0.50.50.60.8-0.80.6
Co content in liver0.50.61.0-1.00.6-0.7
Cu content in liver2.63.27.21.5-2.70.4
Fe content in liver0.00.00.10.20.00.3
K content in liver0.90.91.51.2-0.31.0
Mg content in liver1.41.52.31.5-0.51.4
Mn content in liver1.11.31.9-1.40.7-1.2
Na content in liver1.51.62.51.3-1.60.7
Rb content in liver1.41.72.21.5-1.01.4
Se content in liver0.40.50.6-0.6-0.8-0.8
Sr content in liver1.51.42.4-1.3-0.4-1.5
Zn content in liver0.50.51.0-0.4-1.0-0.7
Bone: minimum diameter0.81.61.9-1.41.4-0.9
Time in familiar zone, hab. session 10.30.30.8-0.40.90.0
Time in novel zone, hab. session 10.10.10.20.2-0.40.3
Total zone transitions, hab. session 10.60.92.20.6-1.50.1
Total locomotion distance, hab. session 10.40.61.0-0.8-0.1-1.0
Locomotion velocity, hab. session 10.60.81.4-1.00.1-1.2
Time in familiar zone, hab. session 20.70.81.0-1.0-0.6-0.9
Time in novel zone, hab. session 20.40.40.70.9-0.20.7
Total zone transitions, hab. session 20.40.60.90.80.31.0
Total locomotion distance, hab. session 20.00.00.10.00.30.0
Locomotion velocity, hab. session 20.00.00.1-0.00.3-0.0
Novel to familiar place preference ratio0.10.10.1-0.4-0.1-0.3
Novelty place preference0.40.40.6-0.80.2-0.6
Time in novel zone, NPP test0.40.40.7-0.80.2-0.7
Total zone transitions, NPP test0.30.40.90.6-0.90.1
Total locomotion distance, NPP test0.10.10.3-0.0-0.1-0.5
Locomotion velocity, NPP test0.10.20.4-0.1-0.3-0.6
Intraocular pressure1.21.72.6-1.60.1-1.6
Delta distance traveled before/after self-admin0.20.20.2-0.40.5-0.3
Delta ambulatory time before/after self-admin0.00.00.0-0.00.00.1
Parametrial fat weight0.40.91.6-0.9-0.3-1.3
Pavlov. Cond. lever latency0.70.91.51.20.41.0
Pavlov. Cond. magazine entry latency0.50.61.40.5-1.20.5
Pavlov. Cond. change in total contacts0.60.60.90.5-1.00.8
Pavlov. Cond. index score0.20.20.6-0.1-0.80.1
Pavlov. Cond. latency score0.10.10.3-0.4-0.5-0.1
Pavlov. Cond. lever contacts1.11.32.3-1.5-0.4-1.2
Pavlov. Cond. magazine entry number0.40.51.3-0.41.1-0.4
Pavlov. Cond. intertrial magazine entries0.91.12.90.6-1.70.1
Pavlov. Cond. lever-magazine prob. diff.0.20.30.8-0.2-0.9-0.1
Pavlov. Cond. response bias0.40.51.1-0.5-1.0-0.3
Pavlov. Cond. lever latency0.10.10.3-0.1-0.5-0.3
Pavlov. Cond. magazine entry latency3.03.55.82.4-0.82.0
Pavlov. Cond. change in total contacts1.72.33.51.70.61.9
Pavlov. Cond. index score1.01.32.01.4-0.01.4
Pavlov. Cond. latency score1.31.72.51.60.11.6
Pavlov. Cond. lever contacts0.60.81.10.80.71.0
Pavlov. Cond. magazine entry number1.11.42.3-1.5-0.0-1.4
Pavlov. Cond. intertrial magazine entries0.50.71.00.80.71.0
Pavlov. Cond. lever-magazine prob. diff.0.81.01.61.20.01.1
Pavlov. Cond. response bias0.81.11.71.20.31.3
Time in closed arm before self-admin1.11.31.81.1-1.30.9
Time in closed arm after self-admin0.10.10.10.2-0.30.3
Time in open arm before self-admin0.80.91.3-0.90.6-1.2
Time in open arm after self-admin0.50.61.0-0.60.7-1.0
Bone: periosteal estimation0.81.74.7-0.52.20.3
Bone: periosteal perimeter1.32.23.9-1.52.0-0.7
Bone: post-yield work1.52.13.21.7-0.31.8
Progressive ratio test 1 active lever presses1.92.03.5-1.90.2-1.6
Progressive ratio test 1 breakpoint1.81.93.2-1.80.1-1.5
Progressive ratio test 1 inactive lever presses0.50.50.7-0.90.6-0.7
Progressive ratio test 2 active lever presses0.10.10.20.20.40.1
Progressive ratio test 2 breakpoint0.10.10.20.30.50.2
Progressive ratio test 2 inactive lever presses0.10.10.40.00.60.2
Incentive Sensitization - Responses0.90.91.21.10.71.0
Incentive Sensitization - Breakpoint0.90.91.11.00.91.0
Sum of active levers in priming session hrs 5-61.01.01.41.20.41.1
Progressive ratio0.00.00.1-0.1-0.1-0.3
Food seeking constrained by brief footshock0.30.40.90.20.90.5
Seeking ratio, punishment vs. effort1.01.22.01.10.71.4
Retroperitoneal fat weight0.92.95.3-1.62.3-0.8
Reaction time number correct0.20.20.5-0.3-0.4-0.7
Reaction time mean minus median0.10.10.4-0.2-0.2-0.6
Reaction time mean minus median AUC0.50.61.1-0.60.6-1.0
Reaction time num false alarms1.31.82.5-1.6-0.5-1.6
Reaction time num false alarms AUC1.82.53.7-1.9-0.5-1.9
Reaction time trials correct on left0.20.20.5-0.3-0.4-0.7
Reaction time trials on left0.20.20.5-0.3-0.4-0.7
Reaction time mean1.21.72.81.7-1.11.1
Reaction time mean AUC1.11.52.41.5-1.10.9
Median of all reaction times2.23.14.72.2-1.41.6
Reaction time omissions0.71.01.31.1-1.10.7
Reaction time false alarm rate0.91.22.1-1.4-0.1-1.3
Reaction time premature initiation rate2.43.24.71.91.22.2
Reaction time premature initiations1.31.92.51.50.81.6
Std. dev. reaction times0.10.20.40.4-0.6-0.2
Reaction time trials completed0.20.20.5-0.3-0.4-0.7
Reaction time trials AUC0.10.10.3-0.3-0.1-0.6
Run reversals in cocaine runway, females1.41.41.6-1.3-1.2-1.1
Run reversals in cocaine runway, males2.72.63.9-2.00.6-1.9
Latency to leave start box in cocaine runway0.80.92.3-0.61.5-0.1
Latency to leave start box in cocaine runway, F0.40.41.0-0.51.0-0.0
Latency to leave start box in cocaine runway, M0.50.51.5-0.31.20.1
Std. dev. time between licks in bursts0.80.91.41.2-0.31.1
Total sessions with >9 infusions2.93.25.8-2.40.9-1.7
Short access day 1 total inactive lever presses0.60.61.0-0.91.0-0.2
Short access day 10 total inactive lever presses0.60.70.80.80.90.8
Short access day 1 total infusions2.42.64.5-2.11.1-1.5
Short access day 10 total infusions1.31.42.8-1.70.7-1.0
Short access total infusions2.02.23.2-1.81.6-0.9
Short access day 1 locomotion0.10.10.2-0.40.2-0.2
Short access day 10 total locomotion2.22.54.2-2.0-0.2-1.8
Short access total locomotion0.60.61.2-1.10.6-0.6
One hour access (0.3 mA shock)0.70.81.1-1.10.5-1.0
Compulsive drug intake1.01.01.71.3-0.31.1
One hour access (shock baseline)1.51.83.1-1.80.4-1.4
Social response proportion0.30.30.7-0.50.80.1
Social responses1.41.82.7-1.71.1-1.2
Social time0.91.21.6-1.0-1.3-0.9
Soleus weight0.20.61.20.80.31.1
Bone: stiffness4.46.910.73.10.63.3
Tibialis anterior weight0.10.40.60.8-0.30.7
Time to tail flick, vehicle, before self-admin0.20.20.3-0.5-0.4-0.6
Time to tail flick, vehicle, after self-admin0.20.20.4-0.6-0.2-0.4
Time to tail flick, test, before self-admin1.61.63.1-1.80.5-1.2
Time to tail flick, test, after self-admin1.41.41.61.1-1.31.2
Delta time to tail flick, vehicle, before/after SA0.70.70.90.70.81.0
Delta time to tail flick, test, before/after SA3.93.54.52.1-1.81.7
Tibia length0.00.00.00.20.10.2
Ambulatory time before self-admin0.70.81.0-1.00.5-1.0
Ambulatory time after self-admin0.00.00.00.1-0.00.2
Bone: tissue strength2.32.33.61.9-0.41.7
Total heroin consumption1.61.82.61.60.71.5
Bone: trabecular number0.61.02.2-0.5-1.5-0.7
Bone: trabecular spacing1.82.36.7-0.32.60.3
Bone: trabecular thickness0.10.10.2-0.3-0.4-0.4
Bone: trabecular tissue density0.81.22.21.5-0.41.1
Water consumed over 24 hours0.70.82.1-0.61.40.1
Number of responses in last shaping day0.10.10.2-0.4-0.20.0