LOC120093530

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 PL gene expression LOC120093530 0.02 0.01 8.3e-03 0.01 0.01 0.02 0.01 1.4e-02 1.3e-02 1.0e-03 3.1e-02
2 Liver gene expression LOC120093530 0.03 0.03 9.8e-04 0.02 0.02 0.02 0.02 9.9e-04 4.2e-03 3.8e-03 1.4e-03
3 NAcc gene expression LOC120093530 0.04 0.03 1.2e-03 0 0.02 0.01 0.01 1.9e-01 5.3e-03 1.5e-02 2.5e-02
4 Adipose gene expression LOC120093530 0.05 0.04 6.9e-04 0.02 0.01 0.02 0.02 1.1e-03 8.5e-03 6.5e-03 4.9e-03

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density2.13.57.10.7-0.62.5-2.7
Area under the delay curve0.50.61.6-1.3-0.7-0.1-0.4
BMI with tail4.213.523.5-4.8-4.8-2.60.8
BMI without tail1.42.85.5-2.3-1.4-1.71.0
Body weight0.93.86.3-2.5-2.5-1.50.6
Weight adjusted by age0.30.40.6-0.60.3-0.80.7
Bone surface4.68.015.31.50.03.8-3.9
Bone volume4.78.015.31.5-0.43.8-3.9
Breakpoint value in progressive ratio session2.02.24.82.21.90.50.5
Number of licking bursts1.82.13.5-0.8-1.9-1.51.3
Context. condit. distance diff. score0.30.40.6-0.8-0.8-0.50.3
Locomotion velocity, session 11.41.62.11.0-1.11.4-1.4
Locomotion distance, session 11.51.93.40.8-0.51.8-1.8
Locomotion velocity, session 23.74.36.62.40.72.6-2.1
Locomotion distance, session 22.73.86.12.00.92.5-2.1
Locomotion velocity, session 32.73.27.42.72.01.2-0.2
Locomotion distance, session 30.00.00.10.10.0-0.20.3
Stereotopy head waving bouts, day 34.25.08.42.72.91.9-1.0
Stereotopy head waving duration, day 33.84.57.62.82.61.7-0.7
Locomotion velocity, session 70.50.51.01.0-0.10.8-0.6
Locomotion distance, session 70.40.50.9-0.5-0.2-0.90.9
Stereotopy head waving bouts, day 71.01.12.00.50.61.4-1.4
Stereotopy head waving duration, day 71.31.62.80.80.41.7-1.6
Locomotion velocity, session 82.12.54.41.10.22.1-2.0
Locomotion distance, session 80.20.30.60.5-0.10.7-0.7
Degree of sensitization distance0.30.30.6-0.8-0.8-0.30.0
Degree of sensitization stereotypy0.60.71.0-1.0-0.80.4-1.0
Conditioned locomotion2.32.74.1-1.8-0.7-2.01.7
Cocaine response after cond. corrected4.14.67.9-2.8-1.2-2.51.7
Cocaine response after cond. not corrected4.44.98.3-2.9-0.9-2.71.8
Cocaine response before conditioning0.70.81.41.01.20.8-0.6
Saline control response0.20.20.3-0.4-0.5-0.50.5
Bone: connectivity density1.11.84.00.2-0.31.7-2.0
Bone: cortical apparent density0.60.81.8-1.3-1.0-0.70.3
Bone: cortical area0.81.22.3-0.5-1.11.0-1.5
Bone: cortical porosity0.50.50.90.80.20.9-0.8
Bone: cortical porosity0.60.71.30.3-0.31.1-1.1
Bone: cortical thickness0.61.02.3-1.2-1.50.0-0.6
Bone: cortical thickness0.40.50.7-0.2-0.8-0.80.7
Bone: cortical tissue density0.50.61.3-1.1-0.8-0.60.3
Condit. Reinf. active minus inactive responses1.92.14.82.21.41.2-0.4
Condit. Reinf. active-inactive response ratio0.50.61.61.30.70.10.5
Condit. Reinf. active responses2.73.35.62.41.42.0-1.3
Condit. Reinf. inactive responses1.61.93.11.30.61.8-1.5
Incentive salience index mean1.61.93.31.80.71.6-1.1
Condit. Reinf. lever presses1.52.14.10.6-0.51.9-2.0
Condit. Reinf. active minus inactive responses1.51.94.51.52.1-0.00.8
Condit. Reinf. active-inactive response ratio1.41.42.60.01.2-1.31.6
Condit. Reinf. active responses1.31.93.51.81.90.8-0.0
Condit. Reinf. inactive responses1.01.21.91.40.71.3-0.8
Condit. Reinf. lever presses1.72.36.11.62.50.20.6
Condit. Reinf. lever reinforcers received1.01.43.21.51.80.40.3
Conditioned reinforcement - actives1.11.12.81.70.61.0-0.5
Conditioned reinforcement - inactives1.21.32.2-1.10.1-1.51.3
Conditioned locomotion4.14.910.23.22.71.5-0.4
Patch foraging indifference point 0 sec0.81.34.8-0.7-2.2-0.3-0.1
Patch foraging indifference point AUC0.30.41.01.00.60.40.0
Delay disc. indifference point, 0s delay2.83.05.1-2.3-2.10.4-1.6
Delay disc. indifference point, 16s delay0.00.00.0-0.20.10.1-0.2
Delay disc. indifference point, 2s delay1.41.64.6-2.1-1.0-0.1-0.8
Delay disc. indifference point, 24s delay0.50.51.3-0.7-1.1-0.2-0.1
Delay disc. indifference point, 4s delay0.50.51.2-0.6-0.00.7-1.1
Delay disc. indifference point, 8s delay0.70.71.2-1.1-0.4-1.00.7
Indifference point function ln k0.10.20.4-0.70.1-0.40.2
Indifference point function log k0.10.20.4-0.70.1-0.40.2
Patch foraging total patch changes 0 sec0.81.24.2-0.7-2.0-0.50.1
Patch foraging total patch changes 12 sec1.01.22.0-0.9-1.4-1.10.9
Patch foraging total patch changes 18 sec0.20.20.70.9-0.30.3-0.0
Patch foraging total patch changes 24 sec0.30.31.10.2-1.10.3-0.3
Patch foraging total patch changes 6 sec0.40.52.00.2-1.4-0.10.1
Patch foraging time to switch 0 sec0.50.71.3-1.1-0.80.4-0.9
Patch foraging water rate 0 sec0.61.01.9-0.2-0.4-1.31.4
Patch foraging water rate 12 sec1.52.33.6-1.6-0.7-1.91.5
Patch foraging water rate 18 sec2.23.06.2-0.30.9-2.22.5
Patch foraging water rate 24 sec3.85.39.8-1.4-0.3-3.13.1
Patch foraging water rate 6 sec1.21.73.00.31.4-1.31.7
Seeking ratio, delayed vs. immediate footshock2.83.26.92.61.41.8-0.9
Distance traveled before self-admin0.30.30.8-0.20.90.4-0.3
Distance traveled after self-admin0.50.51.11.10.50.7-0.5
Extensor digitorum longus weight3.714.722.5-4.7-4.3-3.62.1
Bone: elastic displacement0.10.10.40.60.10.4-0.3
Bone: elastic work0.30.41.0-0.3-1.00.3-0.7
Bone: endosteal estimation0.20.50.7-0.6-0.80.4-0.8
Bone: endosteal perimeter0.71.52.41.00.71.6-1.5
Epididymis fat weight0.10.20.30.40.3-0.40.6
Delta time in closed arm before/after self-admin2.92.85.4-1.20.1-2.12.3
Delta time in open arm before/after self-admin1.31.33.2-1.2-1.8-0.4-0.2
Diff in mean of infusions in LGA sessions1.41.53.51.51.90.6-0.0
Delay discount exponential model param0.50.51.51.20.70.10.4
Extinction: sum of active levers before priming1.41.43.70.81.9-0.51.0
Active lever presses in extinction session 61.21.23.11.70.71.0-0.5
Bone: final force1.11.84.4-1.0-2.10.5-1.2
Bone: final moment1.01.63.9-0.9-2.00.5-1.2
Food consumed during 24 hour testing period0.20.30.6-0.8-0.5-0.40.1
Glucose1.21.84.0-1.4-2.0-0.90.4
Heart weight0.20.20.40.50.2-0.40.6
Delay discount hyperbolic model param0.70.82.21.50.80.20.4
Intermittent access intake day 1-15 change1.91.95.32.31.40.50.4
Intermittent access intake escalation2.01.93.71.91.4-0.41.3
Intermittent access intake escalation 22.42.35.22.31.7-0.11.1
Intermitt. access day 1 inactive lever presses0.70.81.60.51.3-0.50.9
Intermitt. access day 15 inactive lever presses0.91.02.90.61.7-0.30.7
Intermitt. access escalation Index1.00.91.90.00.21.3-1.4
Intermittent access day 1 total infusions0.10.20.4-0.4-0.7-0.1-0.1
Intermittent access day 15 total infusions0.40.40.91.00.3-0.30.7
Intermittent access terminal intake (last 3 days)0.20.20.80.9-0.00.3-0.1
Intermittent access total infusions0.10.10.20.1-0.3-0.30.4
Intermittent access day 1 locomotion0.10.10.10.20.0-0.30.4
Intermittent access day 15 total locomotion1.21.32.71.61.50.20.5
Intermittent access total locomotion0.30.40.80.90.70.30.1
Intermittent access standard deviation1.01.02.51.61.20.20.5
Left kidney weight0.31.01.80.5-0.51.2-1.3
Right kidney weight0.72.04.42.11.01.4-0.8
Cocaine induced anxiety1.61.82.91.40.81.7-1.4
Post-drug Anxiety2.02.34.01.2-0.22.0-1.9
Baseline Anxiety0.10.10.3-0.10.1-0.50.6
Tail length2.16.516.03.04.00.80.4
Length with tail0.93.36.62.62.11.3-0.5
Length without tail0.30.71.10.3-0.90.9-1.0
Times rat made contact with spout0.60.71.1-0.7-0.8-1.00.9
Lifetime Intake0.10.10.5-0.0-0.7-0.1-0.0
Liver weight, left1.32.04.0-2.0-1.3-1.40.7
Liver weight, right0.71.22.5-1.6-1.4-0.7-0.1
Locomotor activity2.74.36.92.61.82.2-1.5
Locomotor testing distance1.32.23.92.01.31.5-1.0
Locomotor testing rearing0.00.00.1-0.00.1-0.30.3
Locomotion in novel chamber0.10.10.40.6-0.20.10.1
Locomotion in novel chamber post-restriction1.21.43.71.11.90.7-0.3
Fecal boli incidents, locomotor time 11.61.82.6-1.6-0.7-1.61.2
Change in fecal boli incidents, locomotor task1.51.42.40.90.41.5-1.5
Time >=10cm from walls, locomotor time 10.70.71.1-0.3-1.10.7-1.0
Bouts of movement, locomotor time 10.20.20.70.40.90.10.1
Total resting periods, locomotor time 10.40.41.30.51.10.4-0.1
Rest time, locomotor task time 10.30.30.40.50.50.6-0.5
Distance moved, locomotor task time 10.60.71.1-0.4-1.00.7-1.0
Vertical activity count, locomotor time 10.20.20.5-0.3-0.7-0.50.4
Time >=10cm from walls, locomotor time 20.90.91.4-1.2-0.8-1.10.7
Bouts of movement, locomotor time 20.80.91.60.90.21.3-1.1
Total resting periods, locomotor time 21.01.11.90.80.11.4-1.3
Rest time, locomotor task time 20.60.71.20.8-0.21.1-1.0
Distance moved, locomotor task time 20.80.91.3-1.10.2-1.11.0
Vertical activity count, locomotor time 21.61.82.8-1.3-0.7-1.71.5
Light reinforcement 13.15.711.43.42.81.8-0.6
Light reinforcement 20.91.22.61.61.20.8-0.2
Bone: marrow area0.20.40.6-0.6-0.80.4-0.8
Bone: maximum diameter1.32.43.91.40.62.0-1.8
Bone: maximum force1.11.84.7-1.3-2.20.2-1.0
Bone: maximum moment1.01.74.3-1.2-2.10.2-1.0
Mean time between licks in bursts1.31.84.52.11.50.50.6
Mean num. licks in bursts0.40.51.20.31.10.6-0.5
Cd content in liver0.20.20.6-0.4-0.8-0.0-0.1
Co content in liver0.80.92.70.71.7-0.10.5
Cu content in liver0.70.91.4-0.0-1.20.9-1.2
Fe content in liver0.20.30.5-0.1-0.5-0.60.7
K content in liver0.80.81.30.40.71.1-1.1
Mg content in liver1.01.02.10.50.21.4-1.4
Mn content in liver3.74.27.61.60.22.8-2.6
Na content in liver0.30.40.7-0.8-0.60.2-0.6
Rb content in liver0.70.92.0-0.2-0.61.1-1.4
Se content in liver0.10.10.20.50.20.4-0.3
Sr content in liver1.11.01.8-0.31.0-1.11.3
Zn content in liver2.02.33.91.02.0-1.01.7
Bone: minimum diameter0.40.71.50.1-0.41.0-1.2
Time in familiar zone, hab. session 11.91.84.41.62.10.40.3
Time in novel zone, hab. session 11.61.63.9-0.9-2.00.5-1.2
Total zone transitions, hab. session 11.42.03.31.4-0.01.8-1.6
Total locomotion distance, hab. session 13.14.57.71.80.62.8-2.5
Locomotion velocity, hab. session 12.63.75.92.00.92.4-2.1
Time in familiar zone, hab. session 23.23.37.32.32.70.30.8
Time in novel zone, hab. session 23.03.07.7-1.8-2.80.0-1.0
Total zone transitions, hab. session 21.41.93.30.0-1.41.4-1.8
Total locomotion distance, hab. session 21.31.72.81.4-0.11.7-1.4
Locomotion velocity, hab. session 21.72.33.91.4-0.12.0-1.8
Novel to familiar place preference ratio2.02.14.0-1.6-2.00.4-1.3
Novelty place preference1.41.42.6-1.1-1.60.5-1.3
Time in novel zone, NPP test1.51.63.3-1.3-1.80.4-1.1
Total zone transitions, NPP test0.60.81.90.1-1.40.7-0.9
Total locomotion distance, NPP test0.81.11.90.3-1.01.2-1.4
Locomotion velocity, NPP test0.71.01.80.6-0.61.3-1.3
Intraocular pressure0.81.12.2-0.01.0-1.21.5
Delta distance traveled before/after self-admin0.40.41.31.1-0.10.5-0.3
Delta ambulatory time before/after self-admin0.80.91.71.3-0.31.0-0.8
Parametrial fat weight0.10.30.70.80.5-0.00.4
Pavlov. Cond. lever latency0.70.81.8-0.30.2-1.21.3
Pavlov. Cond. magazine entry latency1.01.42.81.71.50.60.1
Pavlov. Cond. change in total contacts0.10.10.10.2-0.30.2-0.1
Pavlov. Cond. index score0.60.71.20.80.51.1-0.9
Pavlov. Cond. latency score0.91.22.00.90.51.4-1.3
Pavlov. Cond. lever contacts1.11.32.60.5-0.51.5-1.6
Pavlov. Cond. magazine entry number0.30.30.6-0.8-0.7-0.50.1
Pavlov. Cond. intertrial magazine entries0.30.40.90.10.4-0.70.9
Pavlov. Cond. lever-magazine prob. diff.0.70.91.31.00.61.1-0.9
Pavlov. Cond. response bias0.40.51.21.10.70.6-0.3
Pavlov. Cond. lever latency0.81.12.4-1.2-1.5-0.80.2
Pavlov. Cond. magazine entry latency1.01.22.90.91.70.9-0.5
Pavlov. Cond. change in total contacts0.60.81.71.11.30.50.0
Pavlov. Cond. index score1.01.33.41.21.80.7-0.2
Pavlov. Cond. latency score1.01.32.71.21.70.9-0.4
Pavlov. Cond. lever contacts0.81.03.01.01.70.30.2
Pavlov. Cond. magazine entry number1.21.42.7-1.2-1.6-1.10.5
Pavlov. Cond. intertrial magazine entries0.70.91.4-1.0-0.8-1.20.8
Pavlov. Cond. lever-magazine prob. diff.1.21.53.51.21.90.9-0.3
Pavlov. Cond. response bias1.41.94.81.62.20.50.2
Time in closed arm before self-admin0.70.81.6-0.7-0.90.5-1.3
Time in closed arm after self-admin0.00.00.00.1-0.1-0.10.1
Time in open arm before self-admin0.91.02.11.21.40.30.6
Time in open arm after self-admin0.80.91.3-1.1-1.1-0.90.6
Bone: periosteal estimation0.71.42.7-0.5-1.31.1-1.6
Bone: periosteal perimeter0.91.53.10.6-0.31.6-1.8
Bone: post-yield work0.30.51.0-1.0-0.8-0.50.0
Progressive ratio test 1 active lever presses0.40.50.7-0.6-0.8-0.70.4
Progressive ratio test 1 breakpoint0.40.50.9-0.7-1.0-0.60.3
Progressive ratio test 1 inactive lever presses0.20.20.80.10.90.1-0.0
Progressive ratio test 2 active lever presses0.10.10.10.2-0.3-0.40.4
Progressive ratio test 2 breakpoint0.10.10.30.5-0.10.2-0.2
Progressive ratio test 2 inactive lever presses0.00.00.10.3-0.00.2-0.2
Incentive Sensitization - Responses0.20.20.40.50.7-0.10.3
Incentive Sensitization - Breakpoint0.20.20.50.70.70.10.1
Sum of active levers in priming session hrs 5-60.10.10.40.00.6-0.20.2
Progressive ratio0.40.50.7-0.6-0.8-0.70.6
Food seeking constrained by brief footshock0.20.30.90.41.00.3-0.0
Seeking ratio, punishment vs. effort0.40.51.50.51.20.5-0.3
Retroperitoneal fat weight1.03.36.7-1.8-2.6-1.60.9
Reaction time number correct1.21.72.6-1.3-1.0-1.61.3
Reaction time mean minus median0.81.01.71.11.30.9-0.5
Reaction time mean minus median AUC1.41.83.10.60.71.8-1.8
Reaction time num false alarms0.20.30.5-0.4-0.7-0.50.4
Reaction time num false alarms AUC0.40.60.9-0.6-0.6-0.90.8
Reaction time trials correct on left1.21.72.6-1.3-1.0-1.61.3
Reaction time trials on left1.11.62.3-1.2-1.0-1.51.2
Reaction time mean0.71.01.70.40.71.3-1.3
Reaction time mean AUC0.60.71.50.20.31.1-1.2
Median of all reaction times0.40.61.4-0.20.31.0-1.2
Reaction time omissions0.20.20.40.50.20.6-0.5
Reaction time false alarm rate0.00.00.1-0.0-0.30.1-0.2
Reaction time premature initiation rate0.81.02.20.91.5-0.51.0
Reaction time premature initiations1.11.53.10.31.1-1.41.8
Std. dev. reaction times0.70.91.40.80.91.2-0.9
Reaction time trials completed1.11.62.3-1.2-1.0-1.51.2
Reaction time trials AUC1.31.93.1-1.3-1.0-1.81.4
Run reversals in cocaine runway, females1.11.11.51.01.01.2-0.9
Run reversals in cocaine runway, males1.81.72.21.51.41.4-0.9
Latency to leave start box in cocaine runway1.71.82.81.1-0.81.7-1.6
Latency to leave start box in cocaine runway, F2.42.64.90.4-1.31.9-2.2
Latency to leave start box in cocaine runway, M0.80.71.61.30.4-0.41.0
Std. dev. time between licks in bursts1.31.62.31.20.91.5-1.3
Total sessions with >9 infusions0.50.61.20.4-0.11.0-1.1
Short access day 1 total inactive lever presses0.00.10.20.20.40.00.1
Short access day 10 total inactive lever presses0.50.50.80.10.9-0.70.9
Short access day 1 total infusions0.70.81.30.4-0.61.1-1.2
Short access day 10 total infusions0.00.10.2-0.1-0.5-0.0-0.1
Short access total infusions0.50.51.20.0-1.10.6-0.8
Short access day 1 locomotion0.40.50.80.90.50.8-0.5
Short access day 10 total locomotion2.22.45.52.02.30.30.5
Short access total locomotion0.50.60.91.00.90.7-0.3
One hour access (0.3 mA shock)0.20.30.4-0.6-0.5-0.50.3
Compulsive drug intake0.30.30.6-0.8-0.7-0.1-0.2
One hour access (shock baseline)0.30.30.6-0.10.4-0.70.8
Social response proportion0.60.61.01.00.40.9-0.7
Social responses6.17.913.43.72.92.7-1.5
Social time0.91.22.3-1.2-1.5-0.90.5
Soleus weight4.713.928.3-5.3-4.4-2.70.7
Bone: stiffness1.93.07.1-2.1-2.7-0.4-0.5
Tibialis anterior weight0.72.45.0-1.9-2.2-0.90.3
Time to tail flick, vehicle, before self-admin2.42.43.41.31.21.8-1.8
Time to tail flick, vehicle, after self-admin0.40.50.90.10.7-0.70.9
Time to tail flick, test, before self-admin1.61.62.90.90.71.7-1.5
Time to tail flick, test, after self-admin0.70.71.40.5-0.01.0-1.2
Delta time to tail flick, vehicle, before/after SA2.32.33.6-1.2-1.0-1.91.8
Delta time to tail flick, test, before/after SA0.40.40.7-0.10.2-0.80.8
Tibia length0.51.32.61.61.60.40.2
Ambulatory time before self-admin0.10.10.3-0.30.50.1-0.0
Ambulatory time after self-admin0.20.20.50.70.20.5-0.3
Bone: tissue strength1.51.53.7-1.4-1.9-0.4-0.2
Total heroin consumption1.41.73.01.71.41.1-0.7
Bone: trabecular number1.82.84.71.60.52.2-1.9
Bone: trabecular spacing3.03.97.0-1.20.2-2.62.6
Bone: trabecular thickness5.26.212.11.0-1.03.2-3.5
Bone: trabecular tissue density3.34.77.0-2.3-2.6-2.11.4
Water consumed over 24 hours0.60.71.3-0.5-0.90.6-1.1
Number of responses in last shaping day0.90.93.00.61.70.5-0.2