LOC120093529

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Brain gene expression LOC120093529 0.04 0.03 7.4e-03 0.01 0.02 0.01 0.01 1.9e-02 6.3e-03 9.0e-02 2.1e-02
2 NAcc gene expression LOC120093529 0.04 0.03 3.4e-06 0.04 0.04 0.03 0.04 9.0e-07 9.6e-07 6.5e-06 1.1e-06
3 PL gene expression LOC120093529 0.03 0.02 7.6e-04 0.01 0.02 0.02 0.02 1.3e-02 1.0e-03 1.5e-03 3.2e-03
4 pVTA gene expression LOC120093529 0.08 0.05 1.8e-07 0.08 0.08 0.07 0.08 3.7e-07 3.4e-07 1.2e-06 4.0e-07

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density0.61.22.3-0.1-0.51.51.5
Area under the delay curve0.10.10.2-0.40.3-0.1-0.1
BMI with tail7.225.132.7-5.75.4-4.4-4.4
BMI without tail1.26.47.7-2.82.8-2.2-2.2
Body weight1.56.68.2-2.62.9-2.4-2.4
Weight adjusted by age0.00.00.00.20.0-0.0-0.0
Bone surface2.44.77.80.7-1.62.82.8
Bone volume1.93.86.60.4-1.42.62.6
Breakpoint value in progressive ratio session0.50.81.51.2-1.00.70.7
Number of licking bursts1.54.75.1-2.12.3-2.1-2.1
Context. condit. distance diff. score0.20.30.4-0.60.5-0.5-0.5
Locomotion velocity, session 10.30.30.5-0.5-0.10.70.7
Locomotion distance, session 11.11.42.10.4-1.01.51.5
Locomotion velocity, session 23.23.85.01.3-1.92.22.2
Locomotion distance, session 23.85.36.61.8-2.22.62.6
Locomotion velocity, session 33.74.35.92.4-2.21.81.8
Locomotion distance, session 30.00.00.10.3-0.20.00.0
Stereotopy head waving bouts, day 35.97.08.22.9-2.72.52.5
Stereotopy head waving duration, day 34.45.56.62.6-2.52.22.1
Locomotion velocity, session 70.20.20.30.2-0.50.60.6
Locomotion distance, session 70.30.40.6-0.30.4-0.8-0.8
Stereotopy head waving bouts, day 71.61.82.50.9-1.31.61.6
Stereotopy head waving duration, day 71.72.13.00.8-1.31.71.7
Locomotion velocity, session 82.42.94.21.0-1.52.02.0
Locomotion distance, session 80.40.60.80.6-0.80.90.9
Degree of sensitization distance0.40.50.8-0.90.7-0.6-0.6
Degree of sensitization stereotypy0.10.10.2-0.4-0.00.40.4
Conditioned locomotion2.02.33.1-1.11.4-1.7-1.7
Cocaine response after cond. corrected2.53.74.3-1.61.9-2.1-2.1
Cocaine response after cond. not corrected2.84.14.9-1.62.0-2.2-2.2
Cocaine response before conditioning0.50.60.70.9-0.80.70.7
Saline control response1.01.31.6-0.91.3-1.2-1.2
Bone: connectivity density0.40.71.30.1-0.41.11.1
Bone: cortical apparent density0.61.01.5-1.20.9-0.8-0.8
Bone: cortical area0.20.30.6-0.80.10.50.5
Bone: cortical porosity0.10.10.30.1-0.30.50.5
Bone: cortical porosity0.20.20.4-0.1-0.20.60.6
Bone: cortical thickness0.40.72.0-1.40.8-0.4-0.4
Bone: cortical thickness1.01.21.4-1.01.0-1.2-1.2
Bone: cortical tissue density0.40.71.1-1.00.7-0.7-0.7
Condit. Reinf. active minus inactive responses2.02.32.71.7-1.71.41.3
Condit. Reinf. active-inactive response ratio0.20.20.50.7-0.50.10.1
Condit. Reinf. active responses3.64.65.02.0-2.22.12.1
Condit. Reinf. inactive responses2.32.93.61.3-1.71.91.9
Incentive salience index mean1.82.32.51.3-1.61.61.6
Condit. Reinf. lever presses1.01.42.40.4-1.01.51.5
Condit. Reinf. active minus inactive responses1.11.73.61.9-1.40.70.7
Condit. Reinf. active-inactive response ratio0.20.30.60.8-0.3-0.5-0.6
Condit. Reinf. active responses1.62.33.41.8-1.61.21.2
Condit. Reinf. inactive responses0.71.01.30.9-0.91.11.1
Condit. Reinf. lever presses1.62.44.52.1-1.71.11.1
Condit. Reinf. lever reinforcers received1.01.42.61.6-1.30.90.8
Conditioned reinforcement - actives0.00.10.20.4-0.50.20.2
Conditioned reinforcement - inactives0.10.40.7-0.10.3-0.8-0.8
Conditioned locomotion3.34.96.52.3-2.52.01.9
Patch foraging indifference point 0 sec1.33.65.7-2.42.1-1.5-1.5
Patch foraging indifference point AUC0.20.50.90.9-0.80.60.6
Delay disc. indifference point, 0s delay0.70.82.4-1.50.90.10.1
Delay disc. indifference point, 16s delay0.10.20.30.3-0.50.40.4
Delay disc. indifference point, 2s delay0.20.20.6-0.80.5-0.00.0
Delay disc. indifference point, 24s delay0.30.40.7-0.90.7-0.5-0.5
Delay disc. indifference point, 4s delay0.60.61.00.4-0.61.01.0
Delay disc. indifference point, 8s delay0.30.60.7-0.60.8-0.8-0.8
Indifference point function ln k0.00.00.1-0.20.1-0.2-0.2
Indifference point function log k0.00.00.1-0.20.1-0.2-0.2
Patch foraging total patch changes 0 sec1.13.25.0-2.22.0-1.4-1.4
Patch foraging total patch changes 12 sec2.02.63.3-1.61.8-1.5-1.5
Patch foraging total patch changes 18 sec0.00.00.1-0.30.3-0.0-0.0
Patch foraging total patch changes 24 sec0.10.40.8-0.90.7-0.3-0.3
Patch foraging total patch changes 6 sec0.91.42.5-1.61.3-0.9-0.9
Patch foraging time to switch 0 sec0.00.10.4-0.60.30.20.2
Patch foraging water rate 0 sec0.41.51.9-0.81.2-1.4-1.4
Patch foraging water rate 12 sec0.41.82.4-1.01.2-1.5-1.5
Patch foraging water rate 18 sec0.71.62.7-0.00.9-1.6-1.7
Patch foraging water rate 24 sec4.36.18.5-1.42.3-2.9-2.9
Patch foraging water rate 6 sec0.30.40.80.9-0.2-0.6-0.7
Seeking ratio, delayed vs. immediate footshock1.82.63.01.6-1.71.61.5
Distance traveled before self-admin0.61.41.91.4-1.21.01.0
Distance traveled after self-admin0.00.00.0-0.10.2-0.0-0.0
Extensor digitorum longus weight5.622.324.6-4.85.0-4.6-4.5
Bone: elastic displacement0.00.00.0-0.0-0.00.00.0
Bone: elastic work0.40.51.2-1.10.8-0.3-0.3
Bone: endosteal estimation0.10.20.7-0.80.5-0.1-0.1
Bone: endosteal perimeter0.71.82.31.0-1.21.51.5
Epididymis fat weight0.00.20.30.30.1-0.6-0.6
Delta time in closed arm before/after self-admin3.23.04.4-0.91.6-2.1-2.1
Delta time in open arm before/after self-admin1.11.21.7-1.31.2-1.0-0.9
Diff in mean of infusions in LGA sessions1.11.93.01.7-1.51.11.1
Delay discount exponential model param0.00.00.10.3-0.30.10.1
Extinction: sum of active levers before priming0.50.71.91.4-0.90.40.4
Active lever presses in extinction session 60.30.30.30.5-0.60.60.6
Bone: final force0.91.54.0-2.01.2-0.4-0.4
Bone: final moment0.91.44.0-2.01.2-0.4-0.4
Food consumed during 24 hour testing period0.20.40.6-0.70.7-0.5-0.5
Glucose1.62.53.2-1.81.7-1.4-1.4
Heart weight0.10.20.50.7-0.40.00.0
Delay discount hyperbolic model param0.10.20.40.6-0.50.10.1
Intermittent access intake day 1-15 change0.10.51.41.2-0.70.20.2
Intermittent access intake escalation0.10.41.21.1-0.60.10.1
Intermittent access intake escalation 20.30.51.31.1-0.80.40.4
Intermitt. access day 1 inactive lever presses0.00.30.60.8-0.0-0.5-0.5
Intermitt. access day 15 inactive lever presses0.10.51.21.1-0.70.50.5
Intermitt. access escalation Index0.10.20.4-0.1-0.20.60.6
Intermittent access day 1 total infusions0.00.10.1-0.30.2-0.3-0.3
Intermittent access day 15 total infusions0.10.10.20.4-0.50.30.2
Intermittent access terminal intake (last 3 days)0.30.50.70.6-0.80.70.7
Intermittent access total infusions0.00.00.10.1-0.20.10.1
Intermittent access day 1 locomotion0.10.20.3-0.10.3-0.6-0.6
Intermittent access day 15 total locomotion0.10.41.01.0-0.80.10.1
Intermittent access total locomotion0.10.10.40.6-0.50.10.1
Intermittent access standard deviation0.42.22.81.5-1.71.41.3
Left kidney weight0.00.10.1-0.20.3-0.3-0.3
Right kidney weight0.00.20.40.6-0.40.10.2
Cocaine induced anxiety1.13.13.61.4-1.71.91.9
Post-drug Anxiety2.22.53.41.0-1.51.81.8
Baseline Anxiety0.00.00.0-0.10.1-0.1-0.1
Tail length1.89.715.13.9-3.32.62.5
Length with tail0.83.46.82.6-1.91.31.3
Length without tail0.21.11.3-0.91.1-1.1-1.1
Times rat made contact with spout1.71.92.3-1.31.5-1.4-1.4
Lifetime Intake0.00.00.1-0.30.1-0.1-0.1
Liver weight, left0.40.81.0-1.00.9-0.8-0.8
Liver weight, right0.00.00.00.20.1-0.2-0.2
Locomotor activity3.45.35.92.2-2.42.32.3
Locomotor testing distance1.23.03.41.7-1.91.71.7
Locomotor testing rearing0.00.00.10.00.2-0.2-0.2
Locomotion in novel chamber0.00.00.0-0.1-0.0-0.0-0.1
Locomotion in novel chamber post-restriction1.54.56.12.5-2.31.81.8
Fecal boli incidents, locomotor time 10.71.92.0-1.11.4-1.4-1.4
Change in fecal boli incidents, locomotor task1.61.62.20.8-1.21.51.5
Time >=10cm from walls, locomotor time 10.20.20.5-0.70.30.30.3
Bouts of movement, locomotor time 10.40.60.91.0-0.80.60.5
Total resting periods, locomotor time 11.11.31.81.4-1.20.90.9
Rest time, locomotor task time 10.50.80.90.7-0.80.90.9
Distance moved, locomotor task time 10.10.20.6-0.80.20.30.3
Vertical activity count, locomotor time 10.10.91.1-1.10.9-0.9-0.9
Time >=10cm from walls, locomotor time 20.51.41.5-1.11.2-1.2-1.2
Bouts of movement, locomotor time 20.20.71.20.4-0.71.11.1
Total resting periods, locomotor time 20.20.91.40.4-0.71.21.2
Rest time, locomotor task time 20.20.40.60.2-0.50.80.8
Distance moved, locomotor task time 20.10.20.4-0.10.3-0.6-0.6
Vertical activity count, locomotor time 20.92.22.8-1.11.4-1.6-1.7
Light reinforcement 11.56.88.32.9-2.82.42.3
Light reinforcement 20.61.42.01.4-1.21.11.0
Bone: marrow area0.10.20.6-0.70.4-0.0-0.0
Bone: maximum diameter1.32.63.41.1-1.61.81.8
Bone: maximum force0.91.84.5-2.11.4-0.6-0.6
Bone: maximum moment1.01.84.5-2.11.4-0.7-0.6
Mean time between licks in bursts0.21.01.61.3-1.20.80.8
Mean num. licks in bursts0.30.80.90.9-0.90.90.9
Cd content in liver0.60.60.90.8-1.00.70.7
Co content in liver1.72.13.71.9-1.61.01.0
Cu content in liver0.10.20.3-0.4-0.20.50.5
Fe content in liver0.20.20.3-0.40.3-0.6-0.6
K content in liver1.51.51.71.0-1.21.31.3
Mg content in liver1.41.61.71.2-1.21.31.3
Mn content in liver4.24.76.31.4-2.12.52.5
Na content in liver0.10.10.2-0.40.10.20.2
Rb content in liver0.30.30.6-0.2-0.30.80.8
Se content in liver0.00.00.00.1-0.10.10.1
Sr content in liver0.20.20.30.6-0.5-0.1-0.1
Zn content in liver1.01.23.51.9-1.10.20.2
Bone: minimum diameter0.10.20.4-0.3-0.20.60.6
Time in familiar zone, hab. session 12.42.74.82.2-1.71.21.2
Time in novel zone, hab. session 11.11.33.3-1.81.2-0.4-0.4
Total zone transitions, hab. session 11.01.42.20.6-0.91.51.5
Total locomotion distance, hab. session 13.55.06.91.5-2.02.62.6
Locomotion velocity, hab. session 13.14.45.71.6-1.92.42.4
Time in familiar zone, hab. session 22.63.06.02.5-1.91.11.1
Time in novel zone, hab. session 22.62.86.1-2.51.9-0.9-0.9
Total zone transitions, hab. session 20.30.40.6-0.80.00.70.7
Total locomotion distance, hab. session 20.81.01.60.5-0.81.31.3
Locomotion velocity, hab. session 21.11.52.30.5-1.01.51.5
Novel to familiar place preference ratio0.91.23.2-1.81.2-0.3-0.3
Novelty place preference0.50.71.9-1.40.9-0.1-0.1
Time in novel zone, NPP test0.81.02.6-1.61.1-0.4-0.3
Total zone transitions, NPP test0.20.30.8-0.90.60.10.1
Total locomotion distance, NPP test0.20.30.5-0.3-0.00.70.7
Locomotion velocity, NPP test0.30.40.80.0-0.30.90.9
Intraocular pressure0.30.40.70.30.5-0.8-0.8
Delta distance traveled before/after self-admin0.70.70.9-0.91.0-0.8-0.7
Delta ambulatory time before/after self-admin0.20.40.9-1.00.7-0.4-0.4
Parametrial fat weight0.20.50.9-1.00.9-0.5-0.5
Pavlov. Cond. lever latency0.60.81.4-0.20.7-1.2-1.2
Pavlov. Cond. magazine entry latency1.21.62.11.4-1.41.11.1
Pavlov. Cond. change in total contacts0.00.10.1-0.30.2-0.2-0.2
Pavlov. Cond. index score0.70.91.10.7-1.01.01.1
Pavlov. Cond. latency score1.11.41.80.8-1.11.31.3
Pavlov. Cond. lever contacts0.40.40.8-0.1-0.40.90.9
Pavlov. Cond. magazine entry number0.40.50.8-0.90.8-0.6-0.6
Pavlov. Cond. intertrial magazine entries0.10.10.30.20.0-0.5-0.5
Pavlov. Cond. lever-magazine prob. diff.0.81.01.10.8-1.01.11.1
Pavlov. Cond. response bias0.40.50.60.8-0.80.60.6
Pavlov. Cond. lever latency1.21.72.5-1.61.3-1.2-1.1
Pavlov. Cond. magazine entry latency1.72.33.21.8-1.51.41.4
Pavlov. Cond. change in total contacts0.30.81.41.2-0.90.70.7
Pavlov. Cond. index score1.32.13.21.8-1.51.21.2
Pavlov. Cond. latency score1.52.43.31.8-1.61.41.4
Pavlov. Cond. lever contacts0.91.42.31.5-1.20.90.9
Pavlov. Cond. magazine entry number2.12.83.5-1.91.7-1.5-1.5
Pavlov. Cond. intertrial magazine entries0.71.61.9-1.21.4-1.3-1.3
Pavlov. Cond. lever-magazine prob. diff.1.72.73.71.9-1.71.41.4
Pavlov. Cond. response bias1.62.13.81.9-1.51.11.1
Time in closed arm before self-admin0.10.20.3-0.2-0.20.50.5
Time in closed arm after self-admin0.20.20.3-0.30.3-0.5-0.6
Time in open arm before self-admin0.00.10.10.4-0.30.10.1
Time in open arm after self-admin2.22.53.0-1.61.7-1.5-1.5
Bone: periosteal estimation0.10.30.9-1.00.20.40.4
Bone: periosteal perimeter0.51.01.60.3-0.81.31.3
Bone: post-yield work0.30.40.7-0.80.8-0.4-0.4
Progressive ratio test 1 active lever presses0.10.20.2-0.50.4-0.4-0.5
Progressive ratio test 1 breakpoint0.10.20.2-0.50.4-0.5-0.5
Progressive ratio test 1 inactive lever presses0.20.50.70.8-0.80.50.5
Progressive ratio test 2 active lever presses0.10.20.20.5-0.50.30.3
Progressive ratio test 2 breakpoint0.20.30.30.6-0.60.40.4
Progressive ratio test 2 inactive lever presses0.00.10.20.1-0.30.40.4
Incentive Sensitization - Responses0.10.30.50.7-0.50.40.4
Incentive Sensitization - Breakpoint0.20.50.70.8-0.70.60.6
Sum of active levers in priming session hrs 5-60.00.00.10.3-0.20.10.1
Progressive ratio0.51.51.6-1.11.2-1.3-1.3
Food seeking constrained by brief footshock0.81.01.51.2-1.00.80.8
Seeking ratio, punishment vs. effort0.92.12.71.6-1.51.31.3
Retroperitoneal fat weight2.511.312.6-3.13.5-3.4-3.4
Reaction time number correct0.72.42.7-1.31.6-1.6-1.6
Reaction time mean minus median0.21.51.81.3-1.31.21.2
Reaction time mean minus median AUC0.53.44.21.3-1.82.02.1
Reaction time num false alarms0.60.91.4-0.91.2-0.9-0.9
Reaction time num false alarms AUC0.51.21.7-1.01.3-1.1-1.1
Reaction time trials correct on left0.72.42.7-1.31.6-1.6-1.6
Reaction time trials on left0.72.22.5-1.21.6-1.6-1.6
Reaction time mean1.12.42.81.2-1.61.71.7
Reaction time mean AUC0.61.41.80.8-1.21.31.4
Median of all reaction times1.01.62.00.9-1.31.41.4
Reaction time omissions0.20.30.50.2-0.60.70.7
Reaction time false alarm rate0.10.10.2-0.40.4-0.1-0.1
Reaction time premature initiation rate0.40.61.61.3-0.80.30.3
Reaction time premature initiations0.10.30.40.60.0-0.6-0.7
Std. dev. reaction times0.51.61.81.1-1.21.31.3
Reaction time trials completed0.72.22.5-1.21.6-1.6-1.6
Reaction time trials AUC0.82.83.2-1.31.8-1.8-1.8
Run reversals in cocaine runway, females3.03.43.61.7-1.91.91.9
Run reversals in cocaine runway, males3.03.34.11.7-2.01.81.8
Latency to leave start box in cocaine runway0.30.40.7-0.3-0.10.80.9
Latency to leave start box in cocaine runway, F0.50.61.2-0.4-0.21.11.1
Latency to leave start box in cocaine runway, M0.10.10.1-0.00.3-0.3-0.3
Std. dev. time between licks in bursts1.12.12.61.1-1.41.61.6
Total sessions with >9 infusions0.00.00.0-0.0-0.20.10.0
Short access day 1 total inactive lever presses0.10.20.70.8-0.40.20.1
Short access day 10 total inactive lever presses0.10.40.60.50.2-0.8-0.8
Short access day 1 total infusions0.00.00.1-0.0-0.20.00.0
Short access day 10 total infusions0.00.00.0-0.10.0-0.1-0.1
Short access total infusions0.00.00.1-0.40.1-0.1-0.1
Short access day 1 locomotion0.50.81.41.2-1.10.60.6
Short access day 10 total locomotion0.41.54.02.0-1.30.50.4
Short access total locomotion0.30.51.11.1-0.90.40.3
One hour access (0.3 mA shock)0.20.20.3-0.20.4-0.5-0.6
Compulsive drug intake0.00.00.00.1-0.20.20.2
One hour access (shock baseline)0.00.10.20.4-0.30.10.1
Social response proportion0.70.91.10.8-1.01.01.0
Social responses8.511.212.13.4-3.53.23.2
Social time1.32.02.2-1.51.4-1.4-1.4
Soleus weight5.315.720.9-4.64.3-3.4-3.4
Bone: stiffness1.62.86.0-2.41.8-1.1-1.1
Tibialis anterior weight1.24.25.6-2.42.2-1.8-1.8
Time to tail flick, vehicle, before self-admin1.51.82.21.2-1.51.41.4
Time to tail flick, vehicle, after self-admin0.10.20.20.50.3-0.5-0.5
Time to tail flick, test, before self-admin1.51.82.40.9-1.21.51.5
Time to tail flick, test, after self-admin0.10.10.20.1-0.20.40.4
Delta time to tail flick, vehicle, before/after SA2.93.13.8-1.41.9-1.9-1.9
Delta time to tail flick, test, before/after SA0.50.71.1-0.20.7-1.0-1.0
Tibia length0.51.32.31.5-1.20.90.9
Ambulatory time before self-admin0.10.30.60.8-0.60.50.5
Ambulatory time after self-admin0.00.00.0-0.10.1-0.0-0.0
Bone: tissue strength2.93.15.4-2.31.9-1.3-1.3
Total heroin consumption2.02.42.61.6-1.51.51.5
Bone: trabecular number0.91.72.50.8-1.01.61.6
Bone: trabecular spacing1.42.13.5-0.41.0-1.9-1.9
Bone: trabecular thickness1.82.44.5-0.1-0.92.12.1
Bone: trabecular tissue density3.96.87.7-2.72.8-2.5-2.5
Water consumed over 24 hours0.20.30.8-0.90.6-0.0-0.0
Number of responses in last shaping day1.82.34.22.1-1.71.01.0