LOC108352312

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Adipose gene expression LOC108352312 0.4 0.14 0.0e+00 0.23 0.25 0.24 0.23 2.4e-25 3.1e-27 2.2e-26 2.4e-25
2 OFC gene expression LOC108352312 0.2 0.11 4.5e-04 0.17 0.15 0.14 0.04 7.0e-05 2.5e-04 4.3e-04 4.8e-02
3 Brain gene expression LOC108352312 0.14 0.07 2.0e-05 0.04 0.06 0.03 0.04 2.5e-04 1.6e-06 8.8e-04 2.2e-04

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
Bone: apparent density0.20.40.90.30.4-1.0
Area under the delay curve1.61.73.30.31.3-1.8
BMI with tail0.20.60.9-0.90.1-1.0
BMI without tail0.10.10.3-0.00.2-0.5
Body weight0.10.30.6-0.8-0.1-0.4
Weight adjusted by age0.60.61.00.91.0-0.2
Bone surface2.34.06.5-2.5-2.01.2
Bone volume1.01.73.2-1.8-1.30.4
Breakpoint value in progressive ratio session0.20.20.7-0.20.00.8
Number of licking bursts0.81.01.30.61.1-1.1
Context. condit. distance diff. score0.20.20.40.60.4-0.2
Locomotion velocity, session 10.00.00.10.3-0.2-0.0
Locomotion distance, session 10.10.10.30.3-0.6-0.0
Locomotion velocity, session 20.30.30.8-0.1-0.40.9
Locomotion distance, session 20.20.30.40.40.6-0.7
Locomotion velocity, session 33.64.27.0-1.3-2.62.0
Locomotion distance, session 30.60.71.2-1.1-0.40.8
Stereotopy head waving bouts, day 31.11.33.1-0.3-1.80.8
Stereotopy head waving duration, day 31.01.12.9-0.3-1.70.7
Locomotion velocity, session 71.01.11.61.21.2-0.6
Locomotion distance, session 72.32.95.31.42.3-1.2
Stereotopy head waving bouts, day 73.13.55.9-0.9-2.42.0
Stereotopy head waving duration, day 73.23.96.4-1.0-2.52.1
Locomotion velocity, session 82.93.55.3-1.3-2.31.9
Locomotion distance, session 80.30.40.50.70.7-0.5
Degree of sensitization distance2.92.93.71.91.7-1.5
Degree of sensitization stereotypy3.23.55.1-1.4-2.31.9
Conditioned locomotion0.30.40.60.80.7-0.1
Cocaine response after cond. corrected0.20.20.40.7-0.20.5
Cocaine response after cond. not corrected0.30.40.80.90.20.4
Cocaine response before conditioning0.10.20.30.20.6-0.3
Saline control response0.30.40.6-0.3-0.70.8
Bone: connectivity density0.20.30.6-0.8-0.4-0.1
Bone: cortical apparent density0.20.20.70.10.1-0.9
Bone: cortical area0.40.61.3-0.3-0.51.2
Bone: cortical porosity0.80.81.21.10.6-1.0
Bone: cortical porosity0.90.91.21.00.8-1.1
Bone: cortical thickness0.71.22.71.60.90.3
Bone: cortical thickness0.30.30.60.50.8-0.2
Bone: cortical tissue density0.20.30.80.00.0-0.9
Condit. Reinf. active minus inactive responses0.00.00.00.0-0.00.2
Condit. Reinf. active-inactive response ratio0.10.10.20.50.20.4
Condit. Reinf. active responses0.00.00.0-0.1-0.10.0
Condit. Reinf. inactive responses0.10.10.2-0.0-0.4-0.1
Incentive salience index mean0.10.10.20.10.40.1
Condit. Reinf. lever presses0.20.30.50.60.7-0.1
Condit. Reinf. active minus inactive responses0.10.10.1-0.3-0.3-0.1
Condit. Reinf. active-inactive response ratio0.50.51.1-0.10.7-1.1
Condit. Reinf. active responses0.71.01.8-0.5-1.41.0
Condit. Reinf. inactive responses1.51.93.0-0.3-1.71.6
Condit. Reinf. lever presses1.21.72.7-1.2-0.91.6
Condit. Reinf. lever reinforcers received0.81.11.8-0.7-1.31.1
Conditioned reinforcement - actives0.60.61.00.51.0-0.7
Conditioned reinforcement - inactives0.80.92.11.50.80.4
Conditioned locomotion0.10.10.20.50.40.0
Patch foraging indifference point 0 sec0.71.12.21.50.11.1
Patch foraging indifference point AUC1.71.92.8-0.8-1.51.7
Delay disc. indifference point, 0s delay0.70.82.1-0.10.5-1.5
Delay disc. indifference point, 16s delay0.60.61.30.00.8-1.1
Delay disc. indifference point, 2s delay0.60.71.6-0.30.7-1.3
Delay disc. indifference point, 24s delay1.61.62.20.81.5-1.4
Delay disc. indifference point, 4s delay0.80.81.9-0.10.8-1.4
Delay disc. indifference point, 8s delay1.21.21.70.61.2-1.3
Indifference point function ln k0.81.11.31.11.1-1.0
Indifference point function log k0.81.11.31.11.1-1.0
Patch foraging total patch changes 0 sec0.60.91.71.3-0.11.0
Patch foraging total patch changes 12 sec2.43.15.6-0.9-1.72.4
Patch foraging total patch changes 18 sec1.11.42.1-0.1-1.41.5
Patch foraging total patch changes 24 sec0.50.71.0-0.4-1.00.9
Patch foraging total patch changes 6 sec1.72.55.20.1-1.62.3
Patch foraging time to switch 0 sec0.40.61.6-0.00.6-1.3
Patch foraging water rate 0 sec1.93.14.3-1.2-1.92.1
Patch foraging water rate 12 sec1.01.53.51.91.0-0.2
Patch foraging water rate 18 sec0.30.40.8-0.9-0.60.2
Patch foraging water rate 24 sec0.20.30.60.30.8-0.0
Patch foraging water rate 6 sec0.00.10.10.30.20.1
Seeking ratio, delayed vs. immediate footshock0.60.71.50.20.8-1.2
Distance traveled before self-admin0.20.20.3-0.4-0.20.6
Distance traveled after self-admin0.40.41.0-1.00.6-0.2
Extensor digitorum longus weight2.710.515.2-3.9-3.71.6
Bone: elastic displacement0.50.60.90.80.4-1.0
Bone: elastic work0.10.20.40.3-0.6-0.1
Bone: endosteal estimation1.73.88.2-2.9-1.70.6
Bone: endosteal perimeter0.91.82.7-1.6-1.40.9
Epididymis fat weight2.14.910.2-3.2-2.00.7
Delta time in closed arm before/after self-admin0.80.81.7-0.10.8-1.3
Delta time in open arm before/after self-admin0.80.81.1-1.0-0.70.9
Diff in mean of infusions in LGA sessions1.82.03.3-0.4-1.61.8
Delay discount exponential model param1.71.73.4-0.4-1.31.8
Extinction: sum of active levers before priming0.90.81.7-0.3-0.91.3
Active lever presses in extinction session 61.41.42.80.6-1.01.7
Bone: final force0.61.01.4-0.9-0.91.2
Bone: final moment0.81.21.8-0.9-1.01.3
Food consumed during 24 hour testing period0.40.51.21.10.4-0.1
Glucose4.06.17.6-2.3-2.72.3
Heart weight0.60.92.5-1.6-0.1-0.4
Delay discount hyperbolic model param1.41.53.2-0.2-1.11.8
Intermittent access intake day 1-15 change0.40.41.31.1-0.00.1
Intermittent access intake escalation0.40.41.11.0-0.10.4
Intermittent access intake escalation 20.70.71.01.0-0.70.8
Intermitt. access day 1 inactive lever presses1.01.02.21.51.00.1
Intermitt. access day 15 inactive lever presses0.40.40.90.60.11.0
Intermitt. access escalation Index0.00.00.10.20.20.2
Intermittent access day 1 total infusions0.30.30.60.80.6-0.2
Intermittent access day 15 total infusions1.21.43.71.90.40.5
Intermittent access terminal intake (last 3 days)1.01.12.91.70.60.3
Intermittent access total infusions0.70.81.91.40.60.4
Intermittent access day 1 locomotion1.41.52.01.41.4-0.8
Intermittent access day 15 total locomotion0.60.61.51.2-0.20.5
Intermittent access total locomotion1.11.23.31.80.50.5
Intermittent access standard deviation0.50.50.90.9-0.40.8
Left kidney weight1.95.28.41.52.9-2.3
Right kidney weight2.16.09.02.03.0-2.2
Cocaine induced anxiety0.10.10.20.4-0.30.5
Post-drug Anxiety0.70.81.7-0.2-0.91.3
Baseline Anxiety0.00.00.0-0.1-0.10.2
Tail length0.20.71.31.10.60.6
Length with tail0.00.10.10.30.30.3
Length without tail0.00.00.0-0.20.1-0.0
Times rat made contact with spout5.36.111.63.42.2-1.3
Lifetime Intake0.30.30.60.70.60.2
Liver weight, left0.10.10.30.10.60.2
Liver weight, right0.20.30.70.20.8-0.4
Locomotor activity2.54.05.72.22.4-1.2
Locomotor testing distance0.91.53.11.81.1-0.3
Locomotor testing rearing0.60.91.30.91.2-0.8
Locomotion in novel chamber0.10.10.30.4-0.10.5
Locomotion in novel chamber post-restriction0.91.12.3-1.5-1.00.3
Fecal boli incidents, locomotor time 10.80.91.40.11.2-1.2
Change in fecal boli incidents, locomotor task1.81.72.11.41.4-1.1
Time >=10cm from walls, locomotor time 10.20.20.40.5-0.10.7
Bouts of movement, locomotor time 10.10.10.30.2-0.5-0.2
Total resting periods, locomotor time 10.10.10.20.2-0.4-0.1
Rest time, locomotor task time 10.60.71.6-0.40.6-1.3
Distance moved, locomotor task time 10.10.10.30.3-0.20.5
Vertical activity count, locomotor time 10.91.01.9-0.2-1.01.4
Time >=10cm from walls, locomotor time 20.60.61.0-1.0-0.70.6
Bouts of movement, locomotor time 21.41.52.1-1.4-1.21.1
Total resting periods, locomotor time 20.40.40.6-0.8-0.60.6
Rest time, locomotor task time 20.60.61.01.00.6-0.7
Distance moved, locomotor task time 20.50.51.2-1.1-0.60.3
Vertical activity count, locomotor time 21.41.52.6-1.6-0.91.0
Light reinforcement 10.10.20.2-0.50.4-0.5
Light reinforcement 22.93.96.7-2.6-1.71.4
Bone: marrow area1.73.88.1-2.9-1.70.6
Bone: maximum diameter0.91.61.7-1.3-1.31.3
Bone: maximum force0.61.01.1-0.8-1.01.1
Bone: maximum moment0.61.01.3-0.9-1.01.1
Mean time between licks in bursts2.63.74.72.21.7-1.8
Mean num. licks in bursts0.50.61.41.2-0.20.6
Cd content in liver0.50.61.21.10.70.2
Co content in liver0.10.10.1-0.30.0-0.4
Cu content in liver0.30.40.7-0.5-0.50.8
Fe content in liver2.12.64.1-0.8-1.72.0
K content in liver0.80.81.7-1.3-0.50.6
Mg content in liver0.80.81.2-1.1-0.90.7
Mn content in liver0.30.40.9-0.9-0.4-0.3
Na content in liver5.15.46.1-2.2-2.32.5
Rb content in liver0.30.30.50.40.7-0.5
Se content in liver0.40.51.50.2-0.31.2
Sr content in liver2.12.02.61.41.6-1.1
Zn content in liver0.30.30.70.4-0.10.8
Bone: minimum diameter2.54.66.1-2.4-2.51.4
Time in familiar zone, hab. session 10.50.50.90.60.4-1.0
Time in novel zone, hab. session 10.70.71.4-1.2-0.80.4
Total zone transitions, hab. session 11.11.62.61.41.6-0.5
Total locomotion distance, hab. session 11.31.83.11.31.8-0.8
Locomotion velocity, hab. session 11.31.93.41.41.8-0.7
Time in familiar zone, hab. session 20.40.41.2-0.10.2-1.1
Time in novel zone, hab. session 20.10.10.3-0.0-0.10.6
Total zone transitions, hab. session 21.92.52.81.51.7-1.6
Total locomotion distance, hab. session 24.05.36.42.02.5-2.3
Locomotion velocity, hab. session 23.85.26.42.12.5-2.2
Novel to familiar place preference ratio0.10.10.1-0.40.30.2
Novelty place preference0.20.20.6-0.80.10.2
Time in novel zone, NPP test0.20.30.8-0.90.00.1
Total zone transitions, NPP test0.20.20.50.70.2-0.4
Total locomotion distance, NPP test0.60.81.10.71.0-0.9
Locomotion velocity, NPP test0.81.11.51.01.2-0.9
Intraocular pressure0.30.41.1-0.1-0.3-1.1
Delta distance traveled before/after self-admin0.90.91.7-0.31.3-1.0
Delta ambulatory time before/after self-admin1.11.22.1-0.11.4-1.2
Parametrial fat weight0.51.02.5-1.6-0.2-0.7
Pavlov. Cond. lever latency0.40.51.00.50.5-1.0
Pavlov. Cond. magazine entry latency0.50.70.80.70.9-0.8
Pavlov. Cond. change in total contacts0.10.10.1-0.20.30.3
Pavlov. Cond. index score0.10.10.2-0.00.20.4
Pavlov. Cond. latency score0.10.10.2-0.00.40.4
Pavlov. Cond. lever contacts0.40.51.4-0.1-0.21.2
Pavlov. Cond. magazine entry number0.10.10.2-0.2-0.40.4
Pavlov. Cond. intertrial magazine entries6.57.911.1-2.1-3.32.9
Pavlov. Cond. lever-magazine prob. diff.0.00.10.1-0.00.20.4
Pavlov. Cond. response bias0.10.20.40.60.3-0.3
Pavlov. Cond. lever latency1.82.43.01.51.4-1.7
Pavlov. Cond. magazine entry latency0.20.20.5-0.10.20.7
Pavlov. Cond. change in total contacts0.60.81.5-1.2-0.60.7
Pavlov. Cond. index score0.70.92.0-0.6-0.61.4
Pavlov. Cond. latency score0.30.41.1-0.4-0.11.0
Pavlov. Cond. lever contacts0.81.11.4-1.2-0.81.1
Pavlov. Cond. magazine entry number0.10.10.20.5-0.1-0.1
Pavlov. Cond. intertrial magazine entries0.30.41.00.1-1.00.2
Pavlov. Cond. lever-magazine prob. diff.0.50.61.5-0.5-0.41.2
Pavlov. Cond. response bias0.60.81.0-0.9-0.71.0
Time in closed arm before self-admin0.10.10.4-0.6-0.20.1
Time in closed arm after self-admin2.52.65.5-0.51.4-2.3
Time in open arm before self-admin0.20.20.30.50.4-0.6
Time in open arm after self-admin1.21.32.3-0.4-1.21.5
Bone: periosteal estimation1.12.33.6-1.9-1.41.1
Bone: periosteal perimeter0.40.70.8-0.6-0.90.9
Bone: post-yield work1.31.72.3-1.0-1.51.4
Progressive ratio test 1 active lever presses0.50.61.00.51.0-0.6
Progressive ratio test 1 breakpoint0.80.81.50.51.2-0.8
Progressive ratio test 1 inactive lever presses0.30.30.70.80.50.1
Progressive ratio test 2 active lever presses0.80.92.41.60.40.1
Progressive ratio test 2 breakpoint0.70.82.11.50.20.3
Progressive ratio test 2 inactive lever presses1.11.22.71.60.01.0
Incentive Sensitization - Responses0.60.60.70.7-0.80.8
Incentive Sensitization - Breakpoint0.70.70.80.8-0.90.8
Sum of active levers in priming session hrs 5-61.91.84.1-0.4-1.12.0
Progressive ratio0.20.20.3-0.4-0.50.5
Food seeking constrained by brief footshock0.60.71.31.01.1-0.1
Seeking ratio, punishment vs. effort0.91.11.61.01.3-0.8
Retroperitoneal fat weight1.03.15.6-2.4-1.90.5
Reaction time number correct0.20.20.4-0.1-0.50.6
Reaction time mean minus median0.20.20.40.6-0.00.5
Reaction time mean minus median AUC0.60.81.60.1-0.91.3
Reaction time num false alarms2.94.05.62.41.8-1.7
Reaction time num false alarms AUC4.25.86.72.62.3-2.3
Reaction time trials correct on left0.20.20.4-0.1-0.50.6
Reaction time trials on left0.20.20.5-0.1-0.50.7
Reaction time mean0.10.10.2-0.5-0.4-0.1
Reaction time mean AUC0.10.10.3-0.2-0.50.3
Median of all reaction times0.30.30.6-0.8-0.4-0.5
Reaction time omissions0.00.00.1-0.2-0.10.2
Reaction time false alarm rate3.75.25.42.32.2-2.3
Reaction time premature initiation rate0.50.71.5-1.2-0.70.4
Reaction time premature initiations0.71.01.1-1.1-1.00.9
Std. dev. reaction times0.10.20.50.70.20.2
Reaction time trials completed0.20.20.5-0.1-0.50.7
Reaction time trials AUC0.30.40.7-0.3-0.70.8
Run reversals in cocaine runway, females0.40.40.60.60.8-0.5
Run reversals in cocaine runway, males0.20.20.40.4-0.30.7
Latency to leave start box in cocaine runway0.60.71.70.30.5-1.3
Latency to leave start box in cocaine runway, F1.31.42.60.51.2-1.6
Latency to leave start box in cocaine runway, M0.30.20.5-0.4-0.70.2
Std. dev. time between licks in bursts0.30.40.80.9-0.20.6
Total sessions with >9 infusions0.70.71.60.41.3-0.7
Short access day 1 total inactive lever presses0.70.81.01.00.70.9
Short access day 10 total inactive lever presses0.80.91.5-0.6-1.01.2
Short access day 1 total infusions0.10.10.2-0.20.50.1
Short access day 10 total infusions0.10.20.2-0.40.5-0.3
Short access total infusions0.30.30.5-0.30.7-0.5
Short access day 1 locomotion0.70.81.50.61.2-0.8
Short access day 10 total locomotion0.10.10.20.10.4-0.5
Short access total locomotion0.40.40.6-0.10.8-0.7
One hour access (0.3 mA shock)0.30.41.01.00.20.3
Compulsive drug intake0.50.51.1-1.1-0.40.3
One hour access (shock baseline)0.70.81.81.3-0.10.8
Social response proportion0.70.70.80.90.8-0.9
Social responses1.01.21.50.91.2-1.2
Social time0.10.10.2-0.5-0.30.2
Soleus weight1.23.45.1-2.3-1.21.9
Bone: stiffness0.10.20.5-0.0-0.10.7
Tibialis anterior weight5.619.228.7-5.4-4.72.7
Time to tail flick, vehicle, before self-admin1.41.52.61.61.2-0.4
Time to tail flick, vehicle, after self-admin0.91.02.1-1.5-0.9-0.1
Time to tail flick, test, before self-admin1.71.62.30.71.5-1.5
Time to tail flick, test, after self-admin1.41.42.40.41.5-1.3
Delta time to tail flick, vehicle, before/after SA2.12.13.9-2.0-1.50.5
Delta time to tail flick, test, before/after SA0.10.10.1-0.2-0.10.3
Tibia length0.00.10.2-0.40.00.2
Ambulatory time before self-admin0.90.91.2-0.8-0.91.1
Ambulatory time after self-admin0.40.51.3-1.10.00.4
Bone: tissue strength0.30.30.40.60.6-0.5
Total heroin consumption0.70.81.01.00.90.8
Bone: trabecular number0.20.30.70.20.5-0.9
Bone: trabecular spacing2.02.63.81.51.9-1.3
Bone: trabecular thickness0.40.51.0-0.4-1.0-0.4
Bone: trabecular tissue density2.23.13.81.81.5-2.0
Water consumed over 24 hours0.40.51.21.10.4-0.4
Number of responses in last shaping day1.21.22.10.51.5-1.2