LOC108352311

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Brain gene expression LOC108352311 0.03 0.02 3.9e-03 0.03 0.03 0.01 0.02 1.3e-03 2.1e-03 2.1e-02 3.5e-03
2 PL gene expression LOC108352311 0.1 0.06 2.6e-11 0.11 0.1 0.1 0.11 2.9e-12 2.6e-11 7.0e-11 7.1e-12
3 Liver gene expression LOC108352311 0.04 0.02 1.0e-04 0.02 0.02 0.02 0.02 2.6e-03 2.7e-03 2.6e-03 3.8e-03
4 NAcc gene expression LOC108352311 0.07 0.05 2.4e-06 0.05 0.05 0.05 0.06 9.3e-07 1.2e-06 1.3e-06 2.2e-07

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density0.00.00.10.10.10.30.2
Area under the delay curve0.20.30.70.40.40.8-0.2
BMI with tail0.20.71.2-1.1-0.9-0.60.8
BMI without tail0.00.00.10.1-0.00.2-0.3
Body weight0.10.50.6-0.7-0.8-0.60.8
Weight adjusted by age1.61.82.41.51.21.2-1.5
Bone surface3.66.47.3-2.7-2.5-2.22.7
Bone volume2.13.54.6-1.8-1.9-1.62.1
Breakpoint value in progressive ratio session0.00.00.10.10.20.30.1
Number of licking bursts0.50.60.80.80.60.9-0.8
Context. condit. distance diff. score0.10.10.20.30.40.4-0.3
Locomotion velocity, session 10.10.10.1-0.3-0.0-0.20.4
Locomotion distance, session 10.40.51.1-0.8-0.2-0.41.1
Locomotion velocity, session 20.10.10.2-0.40.1-0.20.4
Locomotion distance, session 20.20.20.40.10.50.60.6
Locomotion velocity, session 34.14.76.3-2.5-1.9-2.22.0
Locomotion distance, session 30.70.81.6-1.3-0.7-0.70.8
Stereotopy head waving bouts, day 30.80.91.7-1.0-0.9-1.30.2
Stereotopy head waving duration, day 30.81.01.9-0.9-1.0-1.40.4
Locomotion velocity, session 71.61.72.11.11.51.4-1.2
Locomotion distance, session 72.63.35.21.32.12.3-1.4
Stereotopy head waving bouts, day 72.12.33.9-1.3-1.5-2.01.2
Stereotopy head waving duration, day 72.22.74.3-1.3-1.6-2.11.4
Locomotion velocity, session 82.73.24.1-2.0-1.7-2.01.4
Locomotion distance, session 80.20.20.50.10.60.70.2
Degree of sensitization distance3.33.33.91.71.92.0-1.6
Degree of sensitization stereotypy3.03.34.2-1.5-1.8-2.11.8
Conditioned locomotion0.91.01.21.01.00.9-1.1
Cocaine response after cond. corrected0.10.10.30.40.60.20.1
Cocaine response after cond. not corrected0.40.51.00.71.00.7-0.1
Cocaine response before conditioning0.10.10.30.20.40.60.2
Saline control response0.40.50.6-0.8-0.6-0.80.8
Bone: connectivity density0.50.81.3-1.0-0.8-0.51.1
Bone: cortical apparent density0.20.20.90.1-0.1-0.10.9
Bone: cortical area0.00.00.1-0.1-0.1-0.30.3
Bone: cortical porosity0.40.40.60.80.70.7-0.3
Bone: cortical porosity0.50.50.70.80.80.8-0.3
Bone: cortical thickness1.93.14.42.11.81.5-1.5
Bone: cortical thickness0.60.71.11.10.70.8-0.6
Bone: cortical tissue density0.20.31.0-0.0-0.2-0.11.0
Condit. Reinf. active minus inactive responses0.00.00.10.00.00.1-0.2
Condit. Reinf. active-inactive response ratio0.40.41.00.50.50.4-1.0
Condit. Reinf. active responses0.10.10.3-0.1-0.1-0.00.5
Condit. Reinf. inactive responses0.40.51.7-0.4-0.3-0.31.3
Incentive salience index mean0.10.10.30.30.30.4-0.5
Condit. Reinf. lever presses0.40.50.60.80.70.7-0.8
Condit. Reinf. active minus inactive responses0.30.30.7-0.5-0.4-0.40.9
Condit. Reinf. active-inactive response ratio0.00.00.1-0.00.00.30.2
Condit. Reinf. active responses0.70.91.2-1.1-0.8-1.00.9
Condit. Reinf. inactive responses0.70.91.3-1.1-0.7-1.10.6
Condit. Reinf. lever presses0.40.50.8-0.7-0.8-0.90.2
Condit. Reinf. lever reinforcers received0.81.11.4-1.2-0.9-1.11.0
Conditioned reinforcement - actives0.40.40.70.60.70.8-0.1
Conditioned reinforcement - inactives2.32.63.21.81.81.4-1.4
Conditioned locomotion0.20.30.40.50.60.5-0.5
Patch foraging indifference point 0 sec1.72.84.11.81.71.0-2.0
Patch foraging indifference point AUC1.31.52.0-1.1-1.1-1.41.2
Delay disc. indifference point, 0s delay0.10.10.4-0.2-0.10.00.6
Delay disc. indifference point, 16s delay0.10.10.20.10.10.5-0.3
Delay disc. indifference point, 2s delay0.10.10.4-0.2-0.20.10.6
Delay disc. indifference point, 24s delay1.11.01.61.11.01.2-0.7
Delay disc. indifference point, 4s delay0.10.10.20.0-0.00.20.4
Delay disc. indifference point, 8s delay0.80.81.00.80.81.0-1.0
Indifference point function ln k1.21.72.41.51.31.2-1.2
Indifference point function log k1.21.72.41.51.31.2-1.2
Patch foraging total patch changes 0 sec1.21.92.91.51.30.7-1.7
Patch foraging total patch changes 12 sec0.60.81.9-0.7-0.8-1.40.4
Patch foraging total patch changes 18 sec0.30.40.9-0.3-0.5-0.90.5
Patch foraging total patch changes 24 sec0.20.30.6-0.4-0.6-0.80.4
Patch foraging total patch changes 6 sec0.10.20.6-0.3-0.1-0.70.1
Patch foraging time to switch 0 sec0.10.10.2-0.4-0.00.40.4
Patch foraging water rate 0 sec1.11.83.6-1.0-1.4-1.90.9
Patch foraging water rate 12 sec2.23.34.01.81.91.5-2.0
Patch foraging water rate 18 sec0.30.40.8-0.6-0.9-0.70.1
Patch foraging water rate 24 sec0.50.70.91.00.80.8-0.7
Patch foraging water rate 6 sec0.10.20.20.50.40.3-0.4
Seeking ratio, delayed vs. immediate footshock0.10.10.40.20.00.20.6
Distance traveled before self-admin0.10.10.2-0.4-0.2-0.20.3
Distance traveled after self-admin0.10.10.4-0.7-0.40.10.0
Extensor digitorum longus weight5.120.121.5-4.4-4.6-4.54.3
Bone: elastic displacement0.40.40.60.70.60.6-0.8
Bone: elastic work0.00.00.10.1-0.0-0.2-0.3
Bone: endosteal estimation3.78.010.7-3.3-2.9-2.52.7
Bone: endosteal perimeter1.83.74.9-2.2-1.7-1.72.0
Epididymis fat weight4.29.911.0-3.3-3.1-2.83.3
Delta time in closed arm before/after self-admin0.10.10.2-0.1-0.00.5-0.1
Delta time in open arm before/after self-admin0.50.50.6-0.7-0.8-0.80.3
Diff in mean of infusions in LGA sessions0.50.60.9-0.6-0.5-1.00.8
Delay discount exponential model param0.30.30.7-0.4-0.4-0.80.2
Extinction: sum of active levers before priming0.10.10.3-0.2-0.3-0.60.3
Active lever presses in extinction session 60.40.41.30.10.5-0.1-1.1
Bone: final force0.30.60.8-0.8-0.8-0.90.4
Bone: final moment0.30.60.8-0.8-0.8-0.90.4
Food consumed during 24 hour testing period0.50.60.90.91.00.7-0.6
Glucose4.97.37.7-2.7-2.6-2.82.7
Heart weight0.70.91.7-0.8-1.3-0.80.9
Delay discount hyperbolic model param0.10.10.4-0.3-0.3-0.6-0.0
Intermittent access intake day 1-15 change0.70.71.31.10.90.5-0.7
Intermittent access intake escalation0.60.61.01.00.80.4-0.8
Intermittent access intake escalation 20.30.30.50.50.70.1-0.5
Intermitt. access day 1 inactive lever presses3.94.26.12.01.91.8-2.5
Intermitt. access day 15 inactive lever presses0.60.71.01.00.80.6-0.7
Intermitt. access escalation Index0.20.20.40.60.30.3-0.5
Intermittent access day 1 total infusions0.60.71.31.10.90.8-0.3
Intermittent access day 15 total infusions2.52.83.71.91.91.2-1.5
Intermittent access terminal intake (last 3 days)2.42.73.51.91.81.2-1.5
Intermittent access total infusions1.92.22.71.71.61.1-1.4
Intermittent access day 1 locomotion2.52.63.71.91.71.7-1.0
Intermittent access day 15 total locomotion0.60.61.11.01.00.5-0.5
Intermittent access total locomotion2.42.73.81.91.91.4-1.3
Intermittent access standard deviation0.50.50.90.60.90.3-1.0
Left kidney weight1.74.96.42.42.22.5-1.5
Right kidney weight2.57.18.62.72.72.9-2.4
Cocaine induced anxiety0.00.00.00.20.2-0.1-0.1
Post-drug Anxiety0.30.30.5-0.5-0.3-0.70.7
Baseline Anxiety0.00.00.1-0.30.00.00.3
Tail length0.72.13.11.81.41.1-1.5
Length with tail0.10.30.70.80.40.3-0.4
Length without tail0.00.00.0-0.1-0.1-0.20.2
Times rat made contact with spout9.110.511.93.33.43.1-3.1
Lifetime Intake0.80.91.11.11.10.7-0.9
Liver weight, left0.20.30.80.90.60.5-0.1
Liver weight, right0.10.20.40.30.50.6-0.1
Locomotor activity4.57.28.02.52.82.7-2.7
Locomotor testing distance2.13.64.41.82.11.7-1.9
Locomotor testing rearing1.01.62.01.31.31.4-1.0
Locomotion in novel chamber0.20.20.60.80.50.1-0.2
Locomotion in novel chamber post-restriction1.92.32.5-1.3-1.6-1.61.6
Fecal boli incidents, locomotor time 10.40.50.80.80.60.9-0.3
Change in fecal boli incidents, locomotor task2.72.53.01.61.71.6-1.5
Time >=10cm from walls, locomotor time 10.60.61.30.90.50.4-1.1
Bouts of movement, locomotor time 10.10.10.3-0.2-0.2-0.40.5
Total resting periods, locomotor time 10.00.00.10.0-0.1-0.20.3
Rest time, locomotor task time 10.20.20.5-0.5-0.3-0.00.7
Distance moved, locomotor task time 10.30.41.30.20.20.2-1.2
Vertical activity count, locomotor time 10.10.20.3-0.2-0.3-0.6-0.4
Time >=10cm from walls, locomotor time 20.60.61.2-0.7-1.1-0.70.4
Bouts of movement, locomotor time 21.82.03.5-1.0-1.3-1.31.9
Total resting periods, locomotor time 20.50.51.2-0.3-0.6-0.61.1
Rest time, locomotor task time 20.50.61.20.71.10.7-0.3
Distance moved, locomotor task time 20.70.81.2-1.0-1.1-0.80.4
Vertical activity count, locomotor time 21.11.21.8-1.1-1.3-1.20.5
Light reinforcement 10.00.10.30.0-0.20.20.5
Light reinforcement 24.05.36.3-2.3-2.5-2.12.4
Bone: marrow area3.88.210.8-3.3-2.9-2.52.7
Bone: maximum diameter0.91.71.8-1.3-1.3-1.31.3
Bone: maximum force0.50.81.1-0.9-0.9-1.00.6
Bone: maximum moment0.40.70.9-0.8-0.9-1.00.6
Mean time between licks in bursts2.63.74.21.62.12.0-2.0
Mean num. licks in bursts0.60.81.20.91.10.6-0.9
Cd content in liver1.51.72.91.21.21.0-1.7
Co content in liver0.00.00.0-0.1-0.2-0.10.1
Cu content in liver0.00.10.1-0.1-0.3-0.30.1
Fe content in liver0.50.61.5-0.5-0.8-1.2-0.0
K content in liver0.60.60.9-0.9-1.0-0.80.2
Mg content in liver0.90.91.3-0.9-1.1-1.10.3
Mn content in liver1.21.32.4-1.1-1.0-0.81.5
Na content in liver4.14.34.7-2.1-2.0-2.22.0
Rb content in liver0.40.61.01.00.60.7-0.7
Se content in liver0.20.20.60.50.3-0.0-0.8
Sr content in liver2.92.62.71.61.61.6-1.6
Zn content in liver0.40.51.10.60.60.3-1.1
Bone: minimum diameter4.58.510.2-3.2-2.9-2.82.7
Time in familiar zone, hab. session 10.20.10.30.10.30.40.6
Time in novel zone, hab. session 10.80.81.1-1.0-1.1-0.90.2
Total zone transitions, hab. session 12.02.73.81.42.01.9-1.3
Total locomotion distance, hab. session 11.92.73.31.61.81.8-1.4
Locomotion velocity, hab. session 12.12.93.61.61.91.9-1.4
Time in familiar zone, hab. session 20.30.30.7-0.6-0.5-0.20.8
Time in novel zone, hab. session 20.10.10.20.40.20.1-0.5
Total zone transitions, hab. session 21.21.63.00.81.51.7-0.6
Total locomotion distance, hab. session 22.83.75.91.72.12.4-1.3
Locomotion velocity, hab. session 22.83.76.01.62.22.5-1.2
Novel to familiar place preference ratio0.00.00.1-0.10.10.2-0.1
Novelty place preference0.10.10.2-0.4-0.3-0.10.3
Time in novel zone, NPP test0.20.20.3-0.6-0.5-0.20.5
Total zone transitions, NPP test0.10.20.40.20.60.50.2
Total locomotion distance, NPP test0.40.50.90.50.80.9-0.3
Locomotion velocity, NPP test0.60.81.40.81.11.2-0.4
Intraocular pressure0.20.20.3-0.4-0.6-0.40.5
Delta distance traveled before/after self-admin0.20.20.70.10.30.8-0.5
Delta ambulatory time before/after self-admin0.40.40.90.20.41.0-0.7
Parametrial fat weight1.22.42.9-1.7-1.6-1.31.6
Pavlov. Cond. lever latency0.10.10.10.20.20.4-0.4
Pavlov. Cond. magazine entry latency0.50.70.80.90.80.9-0.7
Pavlov. Cond. change in total contacts0.10.10.10.40.10.20.3
Pavlov. Cond. index score0.10.10.20.40.40.3-0.3
Pavlov. Cond. latency score0.10.20.20.50.40.4-0.3
Pavlov. Cond. lever contacts0.00.10.10.30.30.1-0.1
Pavlov. Cond. magazine entry number0.10.10.2-0.3-0.3-0.30.4
Pavlov. Cond. intertrial magazine entries5.26.39.7-2.2-2.6-3.11.9
Pavlov. Cond. lever-magazine prob. diff.0.10.10.10.40.30.2-0.3
Pavlov. Cond. response bias0.20.30.40.70.60.4-0.4
Pavlov. Cond. lever latency1.21.62.01.21.31.4-1.0
Pavlov. Cond. magazine entry latency0.00.00.10.30.20.1-0.2
Pavlov. Cond. change in total contacts0.70.91.1-0.8-1.0-0.91.1
Pavlov. Cond. index score0.10.10.4-0.2-0.4-0.60.1
Pavlov. Cond. latency score0.00.00.00.1-0.0-0.2-0.2
Pavlov. Cond. lever contacts0.50.70.9-0.8-0.9-1.00.7
Pavlov. Cond. magazine entry number0.10.10.10.20.30.3-0.3
Pavlov. Cond. intertrial magazine entries0.20.30.4-0.6-0.4-0.60.5
Pavlov. Cond. lever-magazine prob. diff.0.10.10.2-0.1-0.2-0.50.0
Pavlov. Cond. response bias0.40.50.7-0.6-0.8-0.80.6
Time in closed arm before self-admin0.40.40.6-0.6-0.7-0.60.8
Time in closed arm after self-admin0.50.51.1-0.7-0.50.41.0
Time in open arm before self-admin0.10.10.20.30.40.5-0.2
Time in open arm after self-admin0.20.20.6-0.4-0.4-0.80.0
Bone: periosteal estimation1.73.44.1-2.0-1.8-1.71.8
Bone: periosteal perimeter0.61.01.5-1.1-0.8-0.91.2
Bone: post-yield work1.11.42.2-1.1-1.2-1.51.0
Progressive ratio test 1 active lever presses0.70.71.11.10.80.9-0.6
Progressive ratio test 1 breakpoint1.11.11.51.21.01.1-0.9
Progressive ratio test 1 inactive lever presses1.11.21.51.21.10.9-1.2
Progressive ratio test 2 active lever presses1.31.42.11.31.50.9-0.9
Progressive ratio test 2 breakpoint1.11.31.91.31.40.8-0.9
Progressive ratio test 2 inactive lever presses1.82.13.21.81.71.0-1.1
Incentive Sensitization - Responses0.10.10.10.00.4-0.30.2
Incentive Sensitization - Breakpoint0.10.10.20.10.4-0.30.3
Sum of active levers in priming session hrs 5-60.10.10.3-0.2-0.1-0.6-0.3
Progressive ratio0.10.10.1-0.0-0.3-0.4-0.2
Food seeking constrained by brief footshock1.92.32.51.61.51.4-1.6
Seeking ratio, punishment vs. effort1.11.41.71.01.31.3-1.1
Retroperitoneal fat weight2.16.97.5-2.7-2.6-2.52.7
Reaction time number correct0.10.10.2-0.0-0.1-0.40.5
Reaction time mean minus median0.30.40.60.80.80.4-0.3
Reaction time mean minus median AUC0.10.10.10.20.2-0.30.4
Reaction time num false alarms3.24.45.51.92.12.0-2.3
Reaction time num false alarms AUC3.85.25.82.12.32.3-2.4
Reaction time trials correct on left0.10.10.2-0.0-0.1-0.40.5
Reaction time trials on left0.10.10.2-0.0-0.1-0.40.5
Reaction time mean0.10.10.3-0.5-0.4-0.30.3
Reaction time mean AUC0.00.10.1-0.3-0.2-0.20.1
Median of all reaction times0.30.50.8-0.9-0.8-0.50.5
Reaction time omissions0.00.10.2-0.40.0-0.00.1
Reaction time false alarm rate3.34.65.71.92.02.2-2.4
Reaction time premature initiation rate1.01.31.7-1.0-1.2-1.11.3
Reaction time premature initiations0.91.31.8-0.9-1.0-1.21.3
Std. dev. reaction times0.30.40.70.70.80.6-0.5
Reaction time trials completed0.10.10.2-0.0-0.1-0.40.5
Reaction time trials AUC0.20.20.4-0.3-0.3-0.60.6
Run reversals in cocaine runway, females0.50.50.91.00.70.7-0.3
Run reversals in cocaine runway, males0.10.10.10.20.20.00.4
Latency to leave start box in cocaine runway0.10.10.4-0.1-0.10.00.6
Latency to leave start box in cocaine runway, F0.10.20.50.20.40.7-0.1
Latency to leave start box in cocaine runway, M0.90.81.6-0.7-0.7-0.91.3
Std. dev. time between licks in bursts0.50.70.80.80.90.5-0.9
Total sessions with >9 infusions0.70.80.90.90.81.0-0.9
Short access day 1 total inactive lever presses2.52.84.71.61.61.3-2.2
Short access day 10 total inactive lever presses0.20.30.5-0.7-0.4-0.6-0.2
Short access day 1 total infusions0.10.10.20.40.30.2-0.5
Short access day 10 total infusions0.00.00.10.1-0.10.0-0.2
Short access total infusions0.10.10.20.30.10.3-0.4
Short access day 1 locomotion1.11.21.41.01.01.1-1.2
Short access day 10 total locomotion0.10.10.20.40.20.40.0
Short access total locomotion0.10.10.30.40.20.5-0.2
One hour access (0.3 mA shock)0.60.71.10.91.10.8-0.7
Compulsive drug intake0.80.81.0-1.0-0.9-0.71.0
One hour access (shock baseline)1.11.31.71.21.30.8-1.1
Social response proportion1.01.11.61.30.90.9-1.0
Social responses0.91.21.61.31.01.1-0.9
Social time0.00.10.10.0-0.2-0.30.3
Soleus weight0.82.32.7-1.6-1.6-1.51.2
Bone: stiffness0.00.00.10.10.1-0.0-0.3
Tibialis anterior weight9.131.033.2-5.6-5.8-5.65.4
Time to tail flick, vehicle, before self-admin4.34.46.32.31.81.7-2.5
Time to tail flick, vehicle, after self-admin2.32.52.8-1.7-1.6-1.31.6
Time to tail flick, test, before self-admin0.90.91.60.90.91.3-0.6
Time to tail flick, test, after self-admin0.70.71.60.80.71.3-0.4
Delta time to tail flick, vehicle, before/after SA5.35.36.5-2.4-2.2-2.02.5
Delta time to tail flick, test, before/after SA0.00.00.00.0-0.1-0.0-0.1
Tibia length0.00.00.00.10.00.1-0.2
Ambulatory time before self-admin0.70.81.0-1.0-0.8-0.80.9
Ambulatory time after self-admin0.30.30.8-0.9-0.6-0.30.3
Bone: tissue strength0.50.50.80.70.60.5-0.9
Total heroin consumption1.92.33.01.71.71.4-1.1
Bone: trabecular number0.00.10.10.10.10.30.3
Bone: trabecular spacing2.33.03.92.01.71.7-1.6
Bone: trabecular thickness0.81.01.1-0.9-1.0-1.01.1
Bone: trabecular tissue density1.31.92.61.41.51.6-0.8
Water consumed over 24 hours0.70.81.00.80.90.9-1.0
Number of responses in last shaping day1.11.11.51.10.91.2-1.0