LOC108352143

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 NAcc gene expression LOC108352143 0.05 0.03 2.7e-05 0.05 0.03 0.05 0.06 4.5e-06 6.5e-05 6.4e-07 6.0e-07
2 PL gene expression LOC108352143 0.02 0.01 6.3e-03 0 0 0.01 0 2.2e-01 1.2e-01 7.5e-03 2.9e-01
3 BLA gene expression LOC108352143 0.07 0.04 6.5e-03 0.04 0.01 0.01 0.02 2.3e-03 5.1e-02 8.5e-02 1.9e-02

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
Bone: apparent density1.01.63.5-1.90.5-1.1
Area under the delay curve0.10.10.2-0.50.4-0.2
BMI with tail0.82.84.5-0.52.11.9
BMI without tail2.24.46.6-1.92.61.8
Body weight3.112.917.0-3.14.13.5
Weight adjusted by age0.20.20.40.6-0.40.3
Bone surface4.27.414.3-3.82.41.5
Bone volume3.25.511.9-3.41.90.8
Breakpoint value in progressive ratio session1.11.22.0-0.71.41.1
Number of licking bursts0.20.30.4-0.20.60.6
Context. condit. distance diff. score0.20.30.50.7-0.10.5
Locomotion velocity, session 10.60.71.7-1.30.5-0.1
Locomotion distance, session 10.20.30.8-0.3-0.1-0.9
Locomotion velocity, session 20.10.10.1-0.40.20.2
Locomotion distance, session 20.20.20.20.5-0.5-0.5
Locomotion velocity, session 30.10.10.10.3-0.3-0.2
Locomotion distance, session 30.00.10.1-0.10.20.3
Stereotopy head waving bouts, day 30.80.92.40.0-0.7-1.5
Stereotopy head waving duration, day 30.50.61.20.3-0.7-1.1
Locomotion velocity, session 70.50.60.70.7-0.7-0.8
Locomotion distance, session 70.20.20.30.5-0.5-0.4
Stereotopy head waving bouts, day 70.60.61.10.4-0.8-1.0
Stereotopy head waving duration, day 72.02.42.71.5-1.5-1.6
Locomotion velocity, session 81.51.83.3-0.31.41.8
Locomotion distance, session 80.20.20.50.7-0.4-0.1
Degree of sensitization distance0.00.00.00.0-0.2-0.1
Degree of sensitization stereotypy0.80.91.31.1-0.9-0.7
Conditioned locomotion0.00.00.1-0.30.1-0.1
Cocaine response after cond. corrected0.30.30.80.10.30.9
Cocaine response after cond. not corrected0.20.30.70.20.00.9
Cocaine response before conditioning0.10.20.30.1-0.4-0.5
Saline control response0.50.70.8-0.80.80.9
Bone: connectivity density1.01.53.8-1.90.5-0.7
Bone: cortical apparent density7.09.314.22.6-2.7-3.8
Bone: cortical area2.43.66.7-2.61.80.9
Bone: cortical porosity15.617.120.2-4.13.84.5
Bone: cortical porosity11.412.414.8-3.43.33.9
Bone: cortical thickness1.82.96.31.0-1.2-2.5
Bone: cortical thickness2.32.63.91.3-1.5-2.0
Bone: cortical tissue density6.99.113.82.6-2.6-3.7
Condit. Reinf. active minus inactive responses1.92.13.2-1.81.21.3
Condit. Reinf. active-inactive response ratio0.70.81.3-1.20.60.8
Condit. Reinf. active responses1.82.23.6-1.91.31.0
Condit. Reinf. inactive responses0.40.40.8-0.90.7-0.1
Incentive salience index mean1.41.73.3-1.81.00.9
Condit. Reinf. lever presses0.10.10.3-0.50.3-0.2
Condit. Reinf. active minus inactive responses3.24.07.3-2.71.81.3
Condit. Reinf. active-inactive response ratio2.52.64.6-2.21.51.0
Condit. Reinf. active responses3.14.27.8-2.81.81.3
Condit. Reinf. inactive responses0.40.41.2-1.10.40.1
Condit. Reinf. lever presses0.91.21.7-1.31.00.9
Condit. Reinf. lever reinforcers received2.73.87.2-2.71.71.2
Conditioned reinforcement - actives0.80.80.9-0.81.00.9
Conditioned reinforcement - inactives1.41.62.3-1.21.51.0
Conditioned locomotion2.42.93.5-1.81.91.4
Patch foraging indifference point 0 sec1.52.45.5-2.31.20.4
Patch foraging indifference point AUC0.70.81.4-0.81.20.7
Delay disc. indifference point, 0s delay1.01.11.21.0-1.1-1.1
Delay disc. indifference point, 16s delay0.90.91.5-1.01.20.5
Delay disc. indifference point, 2s delay0.60.61.5-0.6-0.2-1.2
Delay disc. indifference point, 24s delay1.71.62.4-1.51.40.8
Delay disc. indifference point, 4s delay0.10.10.20.4-0.2-0.1
Delay disc. indifference point, 8s delay0.80.82.10.2-0.5-1.4
Indifference point function ln k0.40.51.1-0.0-0.6-1.1
Indifference point function log k0.40.51.1-0.0-0.6-1.1
Patch foraging total patch changes 0 sec1.83.06.3-2.51.50.7
Patch foraging total patch changes 12 sec1.31.73.2-1.81.20.5
Patch foraging total patch changes 18 sec2.12.72.8-1.61.61.7
Patch foraging total patch changes 24 sec1.51.93.9-2.01.20.4
Patch foraging total patch changes 6 sec1.52.24.2-2.01.30.9
Patch foraging time to switch 0 sec0.10.20.30.4-0.60.1
Patch foraging water rate 0 sec1.21.93.0-1.71.50.6
Patch foraging water rate 12 sec0.00.10.10.3-0.2-0.2
Patch foraging water rate 18 sec0.20.30.8-0.2-0.3-0.9
Patch foraging water rate 24 sec0.00.00.10.00.20.2
Patch foraging water rate 6 sec0.20.30.5-0.60.3-0.7
Seeking ratio, delayed vs. immediate footshock0.20.30.40.20.60.6
Distance traveled before self-admin1.81.94.1-0.11.32.0
Distance traveled after self-admin1.82.05.4-0.10.72.3
Extensor digitorum longus weight0.41.74.72.2-0.50.2
Bone: elastic displacement0.40.50.60.8-0.8-0.6
Bone: elastic work0.20.30.7-0.90.40.0
Bone: endosteal estimation12.126.332.1-5.74.65.1
Bone: endosteal perimeter16.834.940.4-6.45.45.9
Epididymis fat weight1.12.63.5-1.91.80.9
Delta time in closed arm before/after self-admin0.10.10.30.10.50.2
Delta time in open arm before/after self-admin1.21.21.80.8-1.4-1.0
Diff in mean of infusions in LGA sessions0.40.51.31.2-0.3-0.0
Delay discount exponential model param0.30.30.50.7-0.6-0.0
Extinction: sum of active levers before priming0.60.61.6-0.21.30.5
Active lever presses in extinction session 63.53.43.7-1.91.91.7
Bone: final force0.91.53.1-1.81.10.3
Bone: final moment1.01.63.4-1.91.10.4
Food consumed during 24 hour testing period2.83.34.0-1.82.01.7
Glucose0.40.61.21.1-0.20.7
Heart weight0.60.81.7-0.40.81.3
Delay discount hyperbolic model param0.20.20.20.5-0.30.4
Intermittent access intake day 1-15 change1.41.42.7-0.41.21.6
Intermittent access intake escalation0.50.51.00.10.71.0
Intermittent access intake escalation 21.11.01.6-0.51.11.3
Intermitt. access day 1 inactive lever presses3.23.45.0-2.21.91.2
Intermitt. access day 15 inactive lever presses2.32.54.4-2.11.70.5
Intermitt. access escalation Index1.51.32.81.7-1.1-0.1
Intermittent access day 1 total infusions1.11.31.7-1.31.30.8
Intermittent access day 15 total infusions1.31.42.0-0.81.41.3
Intermittent access terminal intake (last 3 days)2.83.03.8-1.72.01.6
Intermittent access total infusions2.62.93.4-1.91.81.3
Intermittent access day 1 locomotion5.15.36.5-2.52.51.8
Intermittent access day 15 total locomotion4.75.16.6-2.22.62.0
Intermittent access total locomotion6.77.610.0-3.23.02.0
Intermittent access standard deviation1.31.41.8-1.31.20.8
Left kidney weight0.10.20.40.70.2-0.1
Right kidney weight0.00.10.20.40.2-0.3
Cocaine induced anxiety0.10.10.3-0.50.2-0.1
Post-drug Anxiety0.10.20.3-0.50.40.3
Baseline Anxiety0.40.40.60.8-0.7-0.4
Tail length1.54.67.1-2.72.21.3
Length with tail1.76.28.2-2.92.61.9
Length without tail0.20.50.7-0.80.70.6
Times rat made contact with spout0.70.80.9-0.80.91.0
Lifetime Intake2.52.84.1-2.01.81.1
Liver weight, left0.10.10.3-0.50.2-0.3
Liver weight, right0.71.23.10.4-0.6-1.8
Locomotor activity0.10.20.4-0.50.10.7
Locomotor testing distance0.81.31.8-1.30.71.4
Locomotor testing rearing1.11.73.6-1.00.81.9
Locomotion in novel chamber0.70.82.40.10.21.6
Locomotion in novel chamber post-restriction1.31.63.1-1.81.00.8
Fecal boli incidents, locomotor time 10.50.61.2-0.20.71.1
Change in fecal boli incidents, locomotor task0.10.10.20.3-0.1-0.5
Time >=10cm from walls, locomotor time 11.31.33.11.8-0.90.3
Bouts of movement, locomotor time 10.40.50.90.5-0.6-0.9
Total resting periods, locomotor time 10.50.51.10.5-0.5-1.1
Rest time, locomotor task time 10.91.02.10.4-0.9-1.4
Distance moved, locomotor task time 10.80.81.0-1.01.00.8
Vertical activity count, locomotor time 10.70.70.9-0.70.90.9
Time >=10cm from walls, locomotor time 20.30.30.80.00.30.9
Bouts of movement, locomotor time 20.00.00.00.0-0.1-0.2
Total resting periods, locomotor time 20.10.20.20.3-0.4-0.4
Rest time, locomotor task time 22.22.53.61.9-1.5-1.3
Distance moved, locomotor task time 20.50.50.6-0.80.70.7
Vertical activity count, locomotor time 21.61.82.9-1.71.30.9
Light reinforcement 10.61.22.7-0.7-0.4-1.7
Light reinforcement 21.01.43.1-1.0-0.2-1.8
Bone: marrow area11.925.831.3-5.64.55.0
Bone: maximum diameter5.910.816.0-4.03.12.6
Bone: maximum force1.83.25.8-2.41.70.9
Bone: maximum moment2.03.46.4-2.51.70.9
Mean time between licks in bursts0.71.01.6-0.61.01.3
Mean num. licks in bursts0.00.00.1-0.40.0-0.1
Cd content in liver3.64.06.22.5-2.0-1.2
Co content in liver0.50.61.21.1-0.60.5
Cu content in liver0.20.30.5-0.70.2-0.4
Fe content in liver1.01.21.50.8-1.2-1.2
K content in liver0.20.20.5-0.70.3-0.1
Mg content in liver1.31.43.00.5-0.9-1.7
Mn content in liver1.92.14.90.3-1.2-2.2
Na content in liver0.00.10.1-0.3-0.2-0.2
Rb content in liver4.96.16.62.6-2.5-2.3
Se content in liver1.31.52.11.4-1.2-1.0
Sr content in liver1.31.21.4-1.21.10.9
Zn content in liver0.10.10.1-0.40.1-0.4
Bone: minimum diameter13.024.431.7-5.64.74.4
Time in familiar zone, hab. session 10.60.61.2-0.30.71.1
Time in novel zone, hab. session 10.50.50.90.4-0.7-0.9
Total zone transitions, hab. session 10.20.20.5-0.10.70.4
Total locomotion distance, hab. session 10.40.51.3-1.10.5-0.3
Locomotion velocity, hab. session 10.50.71.6-1.20.7-0.1
Time in familiar zone, hab. session 21.21.22.8-0.50.81.7
Time in novel zone, hab. session 21.51.53.60.4-0.8-1.9
Total zone transitions, hab. session 20.00.00.10.30.10.0
Total locomotion distance, hab. session 20.40.51.5-0.2-0.2-1.2
Locomotion velocity, hab. session 20.40.61.6-0.2-0.2-1.3
Novel to familiar place preference ratio0.70.71.1-1.10.80.6
Novelty place preference0.40.40.6-0.80.60.4
Time in novel zone, NPP test0.30.30.5-0.70.40.4
Total zone transitions, NPP test0.30.41.10.3-0.3-1.0
Total locomotion distance, NPP test0.40.51.3-0.5-0.2-1.1
Locomotion velocity, NPP test0.40.51.3-0.4-0.0-1.2
Intraocular pressure1.92.63.2-1.61.81.4
Delta distance traveled before/after self-admin0.60.71.60.6-1.3-0.3
Delta ambulatory time before/after self-admin0.40.40.90.2-1.0-0.6
Parametrial fat weight0.61.22.6-1.61.0-0.4
Pavlov. Cond. lever latency1.72.13.51.9-1.5-0.9
Pavlov. Cond. magazine entry latency2.22.95.3-2.31.60.9
Pavlov. Cond. change in total contacts1.92.13.6-1.91.40.7
Pavlov. Cond. index score2.32.94.7-2.21.71.0
Pavlov. Cond. latency score2.02.53.8-1.91.61.1
Pavlov. Cond. lever contacts1.92.22.8-1.71.61.2
Pavlov. Cond. magazine entry number1.41.84.02.0-1.2-0.2
Pavlov. Cond. intertrial magazine entries0.40.50.6-0.80.70.5
Pavlov. Cond. lever-magazine prob. diff.2.53.14.8-2.21.81.1
Pavlov. Cond. response bias2.42.95.9-2.41.60.6
Pavlov. Cond. lever latency0.20.30.40.6-0.4-0.5
Pavlov. Cond. magazine entry latency1.21.43.21.8-1.1-0.1
Pavlov. Cond. change in total contacts0.10.10.2-0.20.00.5
Pavlov. Cond. index score0.10.20.50.1-0.10.7
Pavlov. Cond. latency score0.20.20.60.2-0.00.8
Pavlov. Cond. lever contacts0.10.10.2-0.50.20.1
Pavlov. Cond. magazine entry number1.82.24.3-2.11.50.4
Pavlov. Cond. intertrial magazine entries9.412.320.4-4.53.52.1
Pavlov. Cond. lever-magazine prob. diff.0.10.20.40.3-0.20.6
Pavlov. Cond. response bias0.00.00.00.1-0.20.0
Time in closed arm before self-admin1.51.73.51.0-1.9-0.9
Time in closed arm after self-admin0.90.91.61.3-1.1-0.2
Time in open arm before self-admin1.21.22.00.11.31.4
Time in open arm after self-admin0.80.91.1-0.71.01.1
Bone: periosteal estimation9.118.827.9-5.34.03.5
Bone: periosteal perimeter7.813.016.5-4.13.33.4
Bone: post-yield work3.75.07.1-2.01.92.7
Progressive ratio test 1 active lever presses3.33.55.2-2.31.91.2
Progressive ratio test 1 breakpoint4.74.96.9-2.62.31.5
Progressive ratio test 1 inactive lever presses3.53.95.5-2.32.11.3
Progressive ratio test 2 active lever presses4.24.56.7-2.62.21.3
Progressive ratio test 2 breakpoint6.16.98.8-3.02.82.0
Progressive ratio test 2 inactive lever presses3.54.16.3-2.52.20.9
Incentive Sensitization - Responses3.33.44.1-2.02.01.5
Incentive Sensitization - Breakpoint3.23.33.7-1.91.91.6
Sum of active levers in priming session hrs 5-60.30.30.90.90.0-0.3
Progressive ratio0.00.00.0-0.1-0.10.1
Food seeking constrained by brief footshock2.53.14.0-1.61.72.0
Seeking ratio, punishment vs. effort0.81.01.2-0.91.11.1
Retroperitoneal fat weight0.82.73.7-1.91.90.9
Reaction time number correct0.20.30.60.8-0.5-0.5
Reaction time mean minus median0.30.40.60.7-0.8-0.3
Reaction time mean minus median AUC1.52.02.51.4-1.6-1.3
Reaction time num false alarms3.95.25.4-2.32.32.2
Reaction time num false alarms AUC3.44.75.6-2.42.21.9
Reaction time trials correct on left0.20.30.60.8-0.5-0.5
Reaction time trials on left0.20.30.50.7-0.4-0.5
Reaction time mean1.72.43.21.3-1.8-1.4
Reaction time mean AUC2.22.93.91.6-2.0-1.5
Median of all reaction times1.92.63.41.3-1.8-1.6
Reaction time omissions0.30.40.9-0.3-0.6-0.9
Reaction time false alarm rate3.44.75.3-2.32.22.0
Reaction time premature initiation rate0.81.02.0-1.41.00.4
Reaction time premature initiations0.30.40.7-0.90.70.1
Std. dev. reaction times0.91.31.80.9-1.3-1.1
Reaction time trials completed0.20.30.50.7-0.4-0.5
Reaction time trials AUC0.30.40.70.8-0.5-0.6
Run reversals in cocaine runway, females0.30.30.7-0.30.80.3
Run reversals in cocaine runway, males0.20.20.5-0.10.20.7
Latency to leave start box in cocaine runway0.10.10.30.5-0.20.1
Latency to leave start box in cocaine runway, F0.20.20.50.30.10.7
Latency to leave start box in cocaine runway, M0.70.60.90.8-0.6-0.9
Std. dev. time between licks in bursts0.00.00.0-0.10.2-0.0
Total sessions with >9 infusions0.10.10.1-0.30.1-0.4
Short access day 1 total inactive lever presses1.31.51.8-1.21.31.1
Short access day 10 total inactive lever presses0.80.81.6-0.91.20.4
Short access day 1 total infusions0.40.50.8-0.90.80.2
Short access day 10 total infusions5.46.08.3-2.92.61.7
Short access total infusions2.42.74.1-2.01.71.1
Short access day 1 locomotion3.63.95.2-2.32.21.3
Short access day 10 total locomotion9.610.813.2-3.63.62.5
Short access total locomotion5.65.97.0-2.52.72.0
One hour access (0.3 mA shock)1.82.12.6-1.11.61.6
Compulsive drug intake0.30.30.50.5-0.7-0.0
One hour access (shock baseline)1.11.32.2-0.91.51.0
Social response proportion0.60.61.30.20.71.1
Social responses0.20.30.5-0.40.40.7
Social time1.72.23.9-0.91.42.0
Soleus weight0.61.92.4-1.01.51.5
Bone: stiffness0.40.60.8-0.90.80.5
Tibialis anterior weight0.31.01.4-0.41.21.2
Time to tail flick, vehicle, before self-admin0.20.20.5-0.10.10.7
Time to tail flick, vehicle, after self-admin1.01.11.8-1.21.3-0.0
Time to tail flick, test, before self-admin0.20.20.40.70.00.3
Time to tail flick, test, after self-admin0.10.10.1-0.3-0.2-0.3
Delta time to tail flick, vehicle, before/after SA1.31.31.8-1.31.3-0.8
Delta time to tail flick, test, before/after SA0.40.40.6-0.2-0.7-0.8
Tibia length0.00.10.1-0.30.4-0.2
Ambulatory time before self-admin1.71.84.6-0.30.82.2
Ambulatory time after self-admin1.21.33.2-0.60.71.8
Bone: tissue strength1.01.01.71.3-0.8-0.7
Total heroin consumption0.40.40.6-0.50.70.7
Bone: trabecular number1.21.84.5-2.10.8-0.6
Bone: trabecular spacing0.70.91.61.3-0.50.9
Bone: trabecular thickness2.53.07.0-2.61.40.1
Bone: trabecular tissue density1.42.04.00.8-1.1-2.0
Water consumed over 24 hours0.10.10.1-0.30.3-0.2
Number of responses in last shaping day3.13.23.7-1.71.91.7