LOC108352129

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 NAcc gene expression LOC108352129 0.04 0.03 2.7e-05 0.03 0.04 0.02 0.02 5.2e-04 3.9e-05 1.8e-03 7.0e-04
2 PL gene expression LOC108352129 0.06 0.04 1.8e-06 0.06 0.05 0.06 0.06 9.2e-07 1.4e-06 1.1e-06 8.2e-07
3 BLA gene expression LOC108352129 0.39 0.24 1.5e-03 0.04 0.04 0.07 0.04 2.7e-03 2.1e-03 1.0e-04 2.8e-03
4 Brain gene expression LOC108352129 0.05 0.04 4.9e-03 0 0.02 0.02 0.01 1.0e-01 4.7e-03 4.8e-03 7.5e-02

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density1.42.34.3-2.1-1.71.3-0.7
Area under the delay curve0.10.20.4-0.6-0.3-0.3-0.2
BMI with tail2.27.19.92.83.2-1.03.1
BMI without tail0.10.20.30.40.3-0.30.5
Body weight4.318.227.65.15.2-1.74.0
Weight adjusted by age0.70.81.10.50.9-1.11.0
Bone surface0.10.30.6-0.10.30.60.8
Bone volume0.30.50.9-0.50.10.80.9
Breakpoint value in progressive ratio session0.40.40.80.30.30.9-0.9
Number of licking bursts0.20.30.7-0.50.3-0.00.8
Context. condit. distance diff. score0.91.12.61.20.6-1.6-0.1
Locomotion velocity, session 10.40.50.80.80.8-0.00.9
Locomotion distance, session 12.22.94.61.92.10.11.8
Locomotion velocity, session 20.10.10.30.50.20.1-0.2
Locomotion distance, session 20.70.91.70.61.01.30.9
Locomotion velocity, session 30.40.51.10.0-0.40.7-1.1
Locomotion distance, session 30.10.10.40.60.40.20.1
Stereotopy head waving bouts, day 32.12.54.0-1.9-2.00.7-1.4
Stereotopy head waving duration, day 30.10.10.2-0.5-0.40.1-0.1
Locomotion velocity, session 71.41.52.21.11.5-0.81.3
Locomotion distance, session 70.40.50.70.70.8-0.60.8
Stereotopy head waving bouts, day 70.20.20.7-0.8-0.5-0.0-0.0
Stereotopy head waving duration, day 70.10.10.3-0.6-0.40.2-0.2
Locomotion velocity, session 85.26.210.23.22.9-1.81.7
Locomotion distance, session 81.01.52.31.51.5-0.71.0
Degree of sensitization distance1.01.01.31.01.0-1.20.9
Degree of sensitization stereotypy0.40.41.2-1.1-0.6-0.10.1
Conditioned locomotion0.20.30.5-0.4-0.7-0.2-0.7
Cocaine response after cond. corrected0.60.71.3-1.1-0.20.01.1
Cocaine response after cond. not corrected0.80.91.8-1.4-0.2-0.31.2
Cocaine response before conditioning0.20.20.3-0.5-0.4-0.5-0.2
Saline control response0.70.92.20.20.9-0.71.5
Bone: connectivity density2.23.45.6-2.4-2.21.3-1.3
Bone: cortical apparent density6.38.311.8-3.1-3.42.0-2.8
Bone: cortical area0.00.00.1-0.4-0.0-0.00.1
Bone: cortical porosity0.20.30.7-0.40.20.20.9
Bone: cortical porosity0.40.51.6-0.40.4-0.01.3
Bone: cortical thickness0.81.32.1-1.5-1.30.3-1.1
Bone: cortical thickness4.75.47.2-2.6-2.71.6-2.3
Bone: cortical tissue density6.38.311.9-3.1-3.42.0-2.8
Condit. Reinf. active minus inactive responses1.41.62.6-1.0-1.40.9-1.6
Condit. Reinf. active-inactive response ratio1.92.14.1-1.1-1.70.2-2.0
Condit. Reinf. active responses1.11.31.8-1.1-1.30.8-1.3
Condit. Reinf. inactive responses0.10.10.2-0.50.10.20.5
Incentive salience index mean2.22.73.2-1.6-1.81.6-1.6
Condit. Reinf. lever presses1.01.32.3-1.3-1.01.5-0.5
Condit. Reinf. active minus inactive responses0.91.11.5-1.1-0.91.2-0.7
Condit. Reinf. active-inactive response ratio0.80.92.0-0.9-0.61.4-0.3
Condit. Reinf. active responses1.31.93.3-1.5-1.21.8-0.7
Condit. Reinf. inactive responses1.31.62.6-1.6-1.21.4-0.4
Condit. Reinf. lever presses0.20.20.4-0.3-0.40.4-0.6
Condit. Reinf. lever reinforcers received1.62.23.7-1.6-1.31.9-1.0
Conditioned reinforcement - actives0.50.50.9-1.0-0.70.4-0.6
Conditioned reinforcement - inactives2.73.03.5-1.5-1.91.9-1.7
Conditioned locomotion0.30.30.8-0.9-0.5-0.5-0.0
Patch foraging indifference point 0 sec2.23.55.2-1.8-2.31.4-2.0
Patch foraging indifference point AUC0.10.10.20.20.2-0.40.4
Delay disc. indifference point, 0s delay0.60.71.4-1.2-0.80.4-0.6
Delay disc. indifference point, 16s delay0.70.71.2-0.7-1.10.2-1.0
Delay disc. indifference point, 2s delay0.40.51.7-1.3-0.30.30.4
Delay disc. indifference point, 24s delay0.20.20.60.0-0.3-0.8-0.0
Delay disc. indifference point, 4s delay0.30.30.9-1.0-0.30.0-0.4
Delay disc. indifference point, 8s delay0.30.31.0-0.4-0.2-1.00.0
Indifference point function ln k0.10.20.50.0-0.4-0.2-0.7
Indifference point function log k0.10.20.50.0-0.4-0.2-0.7
Patch foraging total patch changes 0 sec1.62.64.1-1.5-2.01.1-1.7
Patch foraging total patch changes 12 sec3.74.87.8-2.8-2.41.9-1.4
Patch foraging total patch changes 18 sec0.50.61.0-0.9-1.00.5-0.6
Patch foraging total patch changes 24 sec0.91.12.3-1.5-1.2-0.6-0.6
Patch foraging total patch changes 6 sec2.43.54.6-1.9-2.12.0-1.4
Patch foraging time to switch 0 sec0.10.10.3-0.3-0.30.6-0.1
Patch foraging water rate 0 sec0.20.30.6-0.2-0.40.8-0.6
Patch foraging water rate 12 sec0.10.20.20.30.3-0.5-0.5
Patch foraging water rate 18 sec0.20.30.7-0.8-0.40.5-0.1
Patch foraging water rate 24 sec1.11.53.9-0.9-0.92.0-0.8
Patch foraging water rate 6 sec1.42.02.3-1.5-1.41.5-1.3
Seeking ratio, delayed vs. immediate footshock1.51.73.3-0.5-0.91.6-1.8
Distance traveled before self-admin0.30.31.00.2-0.11.00.3
Distance traveled after self-admin0.80.91.91.40.8-0.50.8
Extensor digitorum longus weight7.127.940.36.45.8-5.03.6
Bone: elastic displacement0.00.00.1-0.0-0.00.3-0.1
Bone: elastic work0.20.20.8-0.20.10.90.0
Bone: endosteal estimation2.24.86.92.32.4-1.12.6
Bone: endosteal perimeter1.12.23.31.81.7-0.81.4
Epididymis fat weight0.20.40.80.60.60.90.2
Delta time in closed arm before/after self-admin3.33.25.42.12.3-1.01.5
Delta time in open arm before/after self-admin0.10.10.3-0.1-0.20.60.0
Diff in mean of infusions in LGA sessions0.20.30.40.30.6-0.6-0.4
Delay discount exponential model param0.10.10.20.40.10.30.1
Extinction: sum of active levers before priming2.62.53.51.31.5-1.91.6
Active lever presses in extinction session 60.70.71.1-1.0-0.51.10.5
Bone: final force0.30.51.1-1.0-0.20.21.0
Bone: final moment0.30.51.3-0.80.00.11.2
Food consumed during 24 hour testing period0.80.91.41.01.2-0.80.8
Glucose0.20.20.6-0.5-0.00.30.7
Heart weight2.02.85.32.31.90.31.4
Delay discount hyperbolic model param0.10.10.30.60.20.20.1
Intermittent access intake day 1-15 change0.40.41.0-0.6-0.20.5-1.0
Intermittent access intake escalation0.50.41.0-0.6-0.20.6-1.0
Intermittent access intake escalation 20.10.10.20.00.5-0.1-0.2
Intermitt. access day 1 inactive lever presses2.83.06.3-1.3-1.42.5-1.5
Intermitt. access day 15 inactive lever presses4.54.95.3-2.3-2.22.3-2.0
Intermitt. access escalation Index4.33.89.01.41.5-3.01.4
Intermittent access day 1 total infusions0.40.41.1-0.5-0.71.0-0.2
Intermittent access day 15 total infusions0.80.91.4-0.8-0.71.2-1.0
Intermittent access terminal intake (last 3 days)0.80.91.3-0.9-0.81.2-0.9
Intermittent access total infusions0.60.71.9-0.4-0.51.4-0.7
Intermittent access day 1 locomotion0.60.61.2-0.6-0.91.1-0.3
Intermittent access day 15 total locomotion0.30.30.6-0.7-0.60.5-0.2
Intermittent access total locomotion0.91.01.1-1.0-1.11.0-0.9
Intermittent access standard deviation2.62.84.8-1.3-1.31.7-2.2
Left kidney weight0.51.34.32.11.0-0.30.0
Right kidney weight0.10.30.70.80.60.00.6
Cocaine induced anxiety2.83.23.81.72.0-1.71.9
Post-drug Anxiety0.40.50.90.40.6-0.71.0
Baseline Anxiety1.61.72.4-1.5-1.50.8-1.1
Tail length0.10.41.01.00.5-0.2-0.6
Length with tail1.76.113.03.63.1-1.01.1
Length without tail2.96.310.43.23.2-0.62.1
Times rat made contact with spout0.81.02.1-1.1-0.71.5-0.0
Lifetime Intake0.91.02.6-0.5-0.61.6-0.9
Liver weight, left0.10.10.2-0.00.00.4-0.4
Liver weight, right0.50.91.3-0.7-1.01.1-0.9
Locomotor activity0.20.40.9-0.9-0.20.70.4
Locomotor testing distance1.22.04.1-2.0-1.60.9-0.8
Locomotor testing rearing6.19.414.9-3.2-3.92.0-2.8
Locomotion in novel chamber4.55.68.8-3.0-2.52.5-1.2
Locomotion in novel chamber post-restriction0.40.41.2-1.1-0.40.50.3
Fecal boli incidents, locomotor time 10.20.20.60.50.40.10.8
Change in fecal boli incidents, locomotor task0.20.20.6-0.00.3-0.80.3
Time >=10cm from walls, locomotor time 10.30.30.4-0.6-0.6-0.4-0.6
Bouts of movement, locomotor time 10.40.40.90.90.5-0.70.5
Total resting periods, locomotor time 10.91.01.61.30.9-0.81.1
Rest time, locomotor task time 10.10.10.20.0-0.40.40.4
Distance moved, locomotor task time 10.00.10.2-0.40.20.1-0.1
Vertical activity count, locomotor time 10.40.41.50.21.2-0.20.4
Time >=10cm from walls, locomotor time 20.60.61.8-1.3-0.7-0.5-0.2
Bouts of movement, locomotor time 20.60.71.4-0.3-1.20.2-1.1
Total resting periods, locomotor time 20.60.71.4-0.1-1.10.2-1.2
Rest time, locomotor task time 20.50.61.21.10.8-0.30.6
Distance moved, locomotor task time 20.20.30.60.10.6-0.20.8
Vertical activity count, locomotor time 20.50.51.20.41.1-0.40.6
Light reinforcement 12.74.95.5-2.3-2.32.3-1.8
Light reinforcement 20.81.13.1-0.9-0.41.80.4
Bone: marrow area2.14.56.52.22.3-1.02.6
Bone: maximum diameter0.00.00.1-0.20.00.10.2
Bone: maximum force0.30.51.60.10.6-0.21.2
Bone: maximum moment0.40.61.80.20.8-0.31.4
Mean time between licks in bursts1.01.41.91.41.3-0.91.0
Mean num. licks in bursts0.50.61.2-0.3-0.71.1-0.8
Cd content in liver0.10.10.1-0.3-0.40.3-0.3
Co content in liver0.20.30.90.90.40.0-0.2
Cu content in liver0.40.51.40.2-0.50.5-1.2
Fe content in liver0.91.11.81.21.3-0.31.0
K content in liver1.11.11.5-1.1-1.20.7-1.0
Mg content in liver1.92.04.1-1.1-1.60.0-2.0
Mn content in liver2.83.14.7-1.6-2.11.0-2.2
Na content in liver0.20.20.6-0.50.00.20.8
Rb content in liver1.41.72.6-1.4-1.60.9-1.1
Se content in liver5.97.28.9-2.6-3.02.5-2.6
Sr content in liver0.60.61.6-0.1-0.70.3-1.3
Zn content in liver3.33.64.1-1.9-2.02.0-1.6
Bone: minimum diameter0.51.01.41.01.2-0.41.1
Time in familiar zone, hab. session 11.21.22.8-0.50.21.71.2
Time in novel zone, hab. session 11.31.32.8-0.8-1.3-0.1-1.7
Total zone transitions, hab. session 11.01.42.81.71.3-0.70.7
Total locomotion distance, hab. session 10.10.10.20.10.00.4-0.5
Locomotion velocity, hab. session 10.20.30.50.70.5-0.5-0.2
Time in familiar zone, hab. session 20.60.61.7-0.8-0.31.30.1
Time in novel zone, hab. session 20.40.40.9-0.4-0.8-0.1-0.9
Total zone transitions, hab. session 20.81.11.61.11.3-0.41.1
Total locomotion distance, hab. session 20.40.51.00.51.00.40.9
Locomotion velocity, hab. session 20.60.81.50.81.20.01.0
Novel to familiar place preference ratio1.11.13.01.10.6-1.7-0.2
Novelty place preference1.21.23.71.00.4-1.9-0.4
Time in novel zone, NPP test0.80.82.90.50.0-1.7-0.5
Total zone transitions, NPP test0.91.32.90.81.3-0.21.7
Total locomotion distance, NPP test0.30.41.10.00.50.41.0
Locomotion velocity, NPP test0.50.71.40.71.00.01.2
Intraocular pressure1.92.73.61.91.7-1.41.5
Delta distance traveled before/after self-admin1.41.52.91.31.0-1.70.6
Delta ambulatory time before/after self-admin2.02.15.01.21.0-2.21.1
Parametrial fat weight1.12.23.1-1.6-1.41.8-1.1
Pavlov. Cond. lever latency2.12.65.12.01.2-2.30.0
Pavlov. Cond. magazine entry latency7.09.014.5-3.8-3.22.9-1.5
Pavlov. Cond. change in total contacts8.79.311.6-3.3-3.42.9-2.5
Pavlov. Cond. index score5.77.211.7-3.4-2.73.0-0.9
Pavlov. Cond. latency score4.15.38.8-3.0-2.22.7-0.5
Pavlov. Cond. lever contacts1.72.14.2-1.7-1.02.10.2
Pavlov. Cond. magazine entry number9.311.617.74.23.7-3.41.9
Pavlov. Cond. intertrial magazine entries1.01.21.91.40.9-1.30.2
Pavlov. Cond. lever-magazine prob. diff.6.58.012.9-3.6-2.93.0-1.2
Pavlov. Cond. response bias7.18.612.8-3.6-3.23.0-1.7
Pavlov. Cond. lever latency0.40.51.10.70.4-1.10.4
Pavlov. Cond. magazine entry latency0.20.20.60.20.8-0.10.5
Pavlov. Cond. change in total contacts0.81.11.1-1.1-1.11.0-1.0
Pavlov. Cond. index score0.20.20.6-0.50.00.80.1
Pavlov. Cond. latency score0.10.10.2-0.40.10.50.2
Pavlov. Cond. lever contacts0.60.81.7-1.1-0.51.3-0.1
Pavlov. Cond. magazine entry number0.10.10.20.2-0.3-0.5-0.3
Pavlov. Cond. intertrial magazine entries1.01.42.91.40.5-1.7-0.5
Pavlov. Cond. lever-magazine prob. diff.0.20.20.6-0.40.20.80.2
Pavlov. Cond. response bias0.91.22.6-1.3-0.71.6-0.3
Time in closed arm before self-admin1.92.24.4-1.1-2.10.9-1.5
Time in closed arm after self-admin0.30.30.60.80.0-0.4-0.7
Time in open arm before self-admin1.92.13.91.62.0-1.10.9
Time in open arm after self-admin0.40.40.90.70.90.20.5
Bone: periosteal estimation0.40.92.00.71.0-0.31.4
Bone: periosteal perimeter0.91.52.41.11.5-0.41.5
Bone: post-yield work1.31.82.31.51.5-1.01.2
Progressive ratio test 1 active lever presses0.80.81.6-0.9-1.30.9-0.4
Progressive ratio test 1 breakpoint0.70.71.4-0.8-1.20.8-0.3
Progressive ratio test 1 inactive lever presses2.52.74.1-1.3-1.72.0-1.5
Progressive ratio test 2 active lever presses1.61.72.0-1.3-1.41.4-1.1
Progressive ratio test 2 breakpoint1.11.31.6-1.2-1.31.1-0.9
Progressive ratio test 2 inactive lever presses1.11.22.3-0.8-1.01.5-1.0
Incentive Sensitization - Responses1.51.52.0-1.4-1.21.4-0.9
Incentive Sensitization - Breakpoint1.31.41.8-1.3-1.21.3-0.8
Sum of active levers in priming session hrs 5-60.20.20.4-0.6-0.50.40.1
Progressive ratio0.40.51.9-0.30.21.40.1
Food seeking constrained by brief footshock0.10.10.2-0.5-0.40.00.1
Seeking ratio, punishment vs. effort0.60.82.9-0.1-0.3-1.70.1
Retroperitoneal fat weight0.20.51.70.40.11.30.3
Reaction time number correct0.81.22.61.01.6-0.51.0
Reaction time mean minus median0.40.61.10.60.8-1.00.4
Reaction time mean minus median AUC0.20.30.8-0.00.4-0.90.4
Reaction time num false alarms0.30.50.8-0.9-0.00.90.5
Reaction time num false alarms AUC0.20.30.6-0.80.20.70.6
Reaction time trials correct on left0.81.22.61.01.6-0.51.0
Reaction time trials on left0.81.22.51.01.6-0.51.0
Reaction time mean0.50.61.8-0.4-0.8-0.2-1.3
Reaction time mean AUC0.50.71.9-0.4-0.8-0.0-1.4
Median of all reaction times1.31.83.4-1.1-1.50.5-1.8
Reaction time omissions0.60.91.6-1.3-1.00.7-0.7
Reaction time false alarm rate0.40.61.3-1.1-0.60.9-0.0
Reaction time premature initiation rate0.20.20.4-0.6-0.20.3-0.5
Reaction time premature initiations0.10.20.70.20.8-0.20.1
Std. dev. reaction times0.10.10.30.00.2-0.6-0.1
Reaction time trials completed0.81.22.51.01.6-0.51.0
Reaction time trials AUC0.71.02.20.91.5-0.60.9
Run reversals in cocaine runway, females1.61.62.61.61.3-1.5-0.1
Run reversals in cocaine runway, males0.30.30.7-0.8-0.60.1-0.2
Latency to leave start box in cocaine runway1.01.02.01.41.20.80.4
Latency to leave start box in cocaine runway, F1.01.11.91.41.40.20.8
Latency to leave start box in cocaine runway, M1.81.74.4-0.2-0.92.1-1.3
Std. dev. time between licks in bursts0.10.10.20.30.4-0.20.4
Total sessions with >9 infusions0.91.01.1-0.9-1.11.0-1.0
Short access day 1 total inactive lever presses3.13.56.3-1.6-1.62.5-1.5
Short access day 10 total inactive lever presses0.20.20.40.40.70.0-0.3
Short access day 1 total infusions2.32.55.6-0.8-1.32.4-1.4
Short access day 10 total infusions0.60.71.7-0.7-0.71.3-0.3
Short access total infusions1.31.43.3-0.5-0.81.8-1.2
Short access day 1 locomotion4.14.45.7-2.1-2.12.4-1.8
Short access day 10 total locomotion1.01.12.0-1.4-1.40.4-0.5
Short access total locomotion1.01.01.4-0.7-1.01.2-1.1
One hour access (0.3 mA shock)0.10.10.4-0.1-0.10.6-0.4
Compulsive drug intake0.30.40.70.50.4-0.8-0.5
One hour access (shock baseline)0.60.72.1-0.6-0.51.4-0.2
Social response proportion0.30.30.70.50.40.30.9
Social responses0.60.82.7-0.20.01.60.7
Social time0.50.72.20.20.7-0.11.5
Soleus weight0.61.95.5-0.20.9-1.12.3
Bone: stiffness0.20.30.7-0.00.3-0.60.8
Tibialis anterior weight1.45.06.42.42.5-1.72.3
Time to tail flick, vehicle, before self-admin0.00.00.1-0.2-0.10.10.3
Time to tail flick, vehicle, after self-admin0.10.10.3-0.20.20.10.5
Time to tail flick, test, before self-admin2.52.44.61.31.6-2.10.9
Time to tail flick, test, after self-admin1.01.03.3-0.4-0.41.80.6
Delta time to tail flick, vehicle, before/after SA0.20.20.6-0.40.2-0.10.8
Delta time to tail flick, test, before/after SA4.44.09.1-1.7-1.93.0-0.5
Tibia length2.16.09.52.12.9-1.23.1
Ambulatory time before self-admin0.10.10.40.3-0.10.6-0.1
Ambulatory time after self-admin1.71.93.31.81.2-1.01.3
Bone: tissue strength0.80.81.21.01.1-0.60.8
Total heroin consumption1.01.22.0-1.4-1.01.3-0.3
Bone: trabecular number3.14.99.1-3.0-2.41.9-0.9
Bone: trabecular spacing2.12.84.21.41.9-1.22.1
Bone: trabecular thickness0.20.20.7-0.4-0.30.8-0.2
Bone: trabecular tissue density0.50.81.8-0.0-0.9-0.7-1.3
Water consumed over 24 hours0.10.20.30.20.60.10.5
Number of responses in last shaping day1.81.93.7-0.6-1.01.9-1.6