LOC108351921

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 PL gene expression LOC108351921 0.04 0.02 3.4e-03 0.02 0.02 0.01 0.02 3.6e-03 6.6e-03 4.1e-02 1.9e-03
2 Brain gene expression LOC108351921 0.06 0.04 7.9e-04 0.01 0.03 0.04 0.03 1.4e-02 3.6e-04 5.0e-05 6.0e-04
3 NAcc gene expression LOC108351921 0.08 0.05 3.3e-06 0.04 0.04 0.04 0.04 8.1e-06 2.5e-05 4.1e-05 1.7e-05

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
Bone: apparent density1.83.14.4-2.10.82.1
Area under the delay curve0.20.30.3-0.60.3-0.6
BMI with tail1.54.96.12.2-2.0-2.5
BMI without tail0.10.20.6-0.20.70.0
Body weight0.41.63.20.9-1.8-0.9
Weight adjusted by age4.24.85.62.4-2.1-2.1
Bone surface0.30.61.0-0.8-0.41.0
Bone volume1.01.72.9-1.50.21.7
Breakpoint value in progressive ratio session0.20.20.4-0.30.60.3
Number of licking bursts0.60.70.9-0.90.90.7
Context. condit. distance diff. score0.40.40.7-0.80.80.2
Locomotion velocity, session 10.10.10.3-0.1-0.0-0.6
Locomotion distance, session 12.43.14.51.8-1.2-2.1
Locomotion velocity, session 23.54.14.92.2-1.8-2.0
Locomotion distance, session 21.92.73.21.8-1.4-1.7
Locomotion velocity, session 30.20.20.30.3-0.5-0.5
Locomotion distance, session 30.10.10.1-0.20.20.4
Stereotopy head waving bouts, day 30.20.30.4-0.60.50.4
Stereotopy head waving duration, day 30.10.10.2-0.50.4-0.0
Locomotion velocity, session 73.43.74.21.9-1.8-2.0
Locomotion distance, session 71.21.51.91.0-1.3-1.4
Stereotopy head waving bouts, day 70.10.10.3-0.00.2-0.5
Stereotopy head waving duration, day 70.30.40.90.5-0.2-0.9
Locomotion velocity, session 81.72.02.21.3-1.5-1.5
Locomotion distance, session 81.42.02.51.4-1.2-1.6
Degree of sensitization distance1.41.42.50.8-1.1-1.6
Degree of sensitization stereotypy0.20.20.50.3-0.1-0.7
Conditioned locomotion0.70.91.5-1.20.51.0
Cocaine response after cond. corrected0.30.41.0-0.41.0-0.1
Cocaine response after cond. not corrected0.30.30.60.10.7-0.5
Cocaine response before conditioning1.41.72.01.4-1.1-1.4
Saline control response0.81.01.20.9-1.1-1.0
Bone: connectivity density0.71.11.7-1.20.41.3
Bone: cortical apparent density5.57.39.93.1-2.7-2.2
Bone: cortical area0.50.82.20.2-1.5-0.4
Bone: cortical porosity0.80.91.7-0.90.21.3
Bone: cortical porosity0.50.61.1-0.8-0.11.0
Bone: cortical thickness0.60.92.30.4-1.5-0.5
Bone: cortical thickness0.20.20.50.2-0.7-0.5
Bone: cortical tissue density5.47.19.93.1-2.6-2.1
Condit. Reinf. active minus inactive responses0.80.91.6-0.60.9-1.2
Condit. Reinf. active-inactive response ratio1.01.01.5-0.90.9-1.2
Condit. Reinf. active responses0.60.71.9-0.10.5-1.4
Condit. Reinf. inactive responses0.80.91.31.1-0.5-1.1
Incentive salience index mean0.40.50.8-0.40.6-0.9
Condit. Reinf. lever presses0.00.00.0-0.1-0.2-0.1
Condit. Reinf. active minus inactive responses0.70.81.5-1.21.0-0.1
Condit. Reinf. active-inactive response ratio1.71.82.9-1.71.40.7
Condit. Reinf. active responses0.20.30.4-0.50.6-0.6
Condit. Reinf. inactive responses0.91.21.51.2-0.8-1.1
Condit. Reinf. lever presses0.20.20.4-0.50.6-0.2
Condit. Reinf. lever reinforcers received0.30.40.6-0.40.8-0.7
Conditioned reinforcement - actives0.20.20.5-0.70.1-0.4
Conditioned reinforcement - inactives0.20.30.50.1-0.6-0.7
Conditioned locomotion0.40.40.90.5-0.5-0.9
Patch foraging indifference point 0 sec0.61.01.71.1-1.3-0.4
Patch foraging indifference point AUC0.20.30.60.1-0.8-0.4
Delay disc. indifference point, 0s delay2.22.52.51.6-1.6-1.6
Delay disc. indifference point, 16s delay1.31.32.1-1.31.40.2
Delay disc. indifference point, 2s delay0.10.10.2-0.1-0.5-0.3
Delay disc. indifference point, 24s delay0.10.10.1-0.30.3-0.3
Delay disc. indifference point, 4s delay1.01.01.40.6-1.2-1.1
Delay disc. indifference point, 8s delay0.20.20.3-0.50.4-0.3
Indifference point function ln k0.10.10.30.60.0-0.3
Indifference point function log k0.10.10.30.60.0-0.3
Patch foraging total patch changes 0 sec0.40.71.00.9-1.0-0.4
Patch foraging total patch changes 12 sec0.60.71.40.9-1.2-0.4
Patch foraging total patch changes 18 sec0.00.00.00.0-0.20.0
Patch foraging total patch changes 24 sec1.11.33.10.9-1.8-0.3
Patch foraging total patch changes 6 sec0.30.41.20.2-1.10.1
Patch foraging time to switch 0 sec0.10.20.40.00.40.7
Patch foraging water rate 0 sec0.10.20.3-0.30.5-0.6
Patch foraging water rate 12 sec0.30.40.6-0.50.80.6
Patch foraging water rate 18 sec0.20.20.60.30.8-0.1
Patch foraging water rate 24 sec0.10.10.30.30.6-0.2
Patch foraging water rate 6 sec0.20.20.3-0.40.50.5
Seeking ratio, delayed vs. immediate footshock0.30.30.6-0.80.50.4
Distance traveled before self-admin0.30.30.8-0.30.30.9
Distance traveled after self-admin0.40.41.2-0.10.31.1
Extensor digitorum longus weight5.421.427.25.2-4.3-4.3
Bone: elastic displacement1.31.52.1-1.30.91.4
Bone: elastic work0.60.81.3-1.10.11.0
Bone: endosteal estimation0.10.20.4-0.60.30.4
Bone: endosteal perimeter0.10.10.3-0.5-0.20.2
Epididymis fat weight0.10.10.20.4-0.5-0.2
Delta time in closed arm before/after self-admin0.10.10.40.60.1-0.2
Delta time in open arm before/after self-admin1.81.72.9-1.70.71.3
Diff in mean of infusions in LGA sessions1.31.41.8-1.01.31.2
Delay discount exponential model param0.30.30.50.7-0.40.4
Extinction: sum of active levers before priming2.72.73.5-1.81.11.9
Active lever presses in extinction session 60.10.10.2-0.5-0.30.0
Bone: final force0.71.22.20.8-1.5-0.9
Bone: final moment0.61.01.70.8-1.3-0.9
Food consumed during 24 hour testing period0.60.71.10.6-0.8-1.1
Glucose0.91.41.4-1.11.21.2
Heart weight0.81.11.41.0-1.2-0.9
Delay discount hyperbolic model param0.20.20.40.4-0.00.6
Intermittent access intake day 1-15 change0.10.00.10.1-0.2-0.3
Intermittent access intake escalation0.10.10.2-0.40.2-0.3
Intermittent access intake escalation 20.50.50.8-0.90.80.3
Intermitt. access day 1 inactive lever presses0.40.40.8-0.10.80.9
Intermitt. access day 15 inactive lever presses0.00.00.10.30.0-0.0
Intermitt. access escalation Index0.30.30.60.2-0.5-0.8
Intermittent access day 1 total infusions0.30.30.5-0.60.7-0.3
Intermittent access day 15 total infusions0.40.50.7-0.80.8-0.2
Intermittent access terminal intake (last 3 days)0.30.30.5-0.30.7-0.6
Intermittent access total infusions0.30.30.5-0.70.7-0.2
Intermittent access day 1 locomotion0.10.10.10.2-0.3-0.4
Intermittent access day 15 total locomotion0.10.20.30.0-0.4-0.5
Intermittent access total locomotion0.20.20.50.3-0.4-0.7
Intermittent access standard deviation2.42.63.1-1.81.61.5
Left kidney weight0.82.44.51.5-2.1-0.6
Right kidney weight2.26.111.52.3-3.4-1.1
Cocaine induced anxiety4.14.76.22.5-2.0-1.9
Post-drug Anxiety1.82.03.51.3-0.8-1.9
Baseline Anxiety1.92.13.6-1.91.40.7
Tail length0.61.82.5-1.61.11.3
Length with tail0.10.30.7-0.3-0.80.5
Length without tail2.55.510.22.0-3.2-1.5
Times rat made contact with spout2.52.93.7-1.91.61.6
Lifetime Intake0.30.30.5-0.40.7-0.5
Liver weight, left0.20.30.7-0.1-0.30.8
Liver weight, right0.40.71.2-0.6-1.10.7
Locomotor activity0.61.02.0-0.71.40.7
Locomotor testing distance1.42.43.4-1.31.81.4
Locomotor testing rearing1.01.52.4-1.01.51.1
Locomotion in novel chamber3.64.45.42.3-1.6-2.3
Locomotion in novel chamber post-restriction0.50.60.90.9-0.4-0.9
Fecal boli incidents, locomotor time 10.30.30.5-0.10.7-0.6
Change in fecal boli incidents, locomotor task0.10.10.2-0.0-0.50.4
Time >=10cm from walls, locomotor time 12.02.03.11.3-1.8-1.1
Bouts of movement, locomotor time 10.70.71.5-0.30.8-1.2
Total resting periods, locomotor time 10.80.92.0-0.00.8-1.4
Rest time, locomotor task time 12.22.44.6-1.62.20.3
Distance moved, locomotor task time 11.71.92.61.4-1.6-1.0
Vertical activity count, locomotor time 10.50.51.00.7-1.0-0.2
Time >=10cm from walls, locomotor time 20.10.10.1-0.40.20.2
Bouts of movement, locomotor time 20.70.82.00.40.2-1.4
Total resting periods, locomotor time 20.60.71.80.50.1-1.3
Rest time, locomotor task time 21.01.21.4-1.11.20.9
Distance moved, locomotor task time 20.80.91.30.8-1.0-1.2
Vertical activity count, locomotor time 20.91.01.80.6-0.9-1.3
Light reinforcement 13.46.18.02.8-2.6-1.9
Light reinforcement 21.92.54.31.6-2.1-0.8
Bone: marrow area0.10.20.3-0.50.30.3
Bone: maximum diameter0.10.30.5-0.5-0.20.7
Bone: maximum force0.61.02.20.5-1.5-0.7
Bone: maximum moment0.50.91.80.5-1.3-0.8
Mean time between licks in bursts1.92.64.02.0-1.8-0.6
Mean num. licks in bursts0.00.10.10.2-0.3-0.2
Cd content in liver0.00.10.10.20.2-0.2
Co content in liver0.20.30.5-0.50.7-0.3
Cu content in liver0.30.40.7-0.90.5-0.3
Fe content in liver1.82.12.8-1.51.11.7
K content in liver1.51.53.60.9-1.9-0.1
Mg content in liver0.60.61.60.5-1.30.2
Mn content in liver0.40.40.80.9-0.6-0.3
Na content in liver0.60.61.5-0.4-0.51.2
Rb content in liver1.11.43.01.1-0.4-1.7
Se content in liver0.20.20.30.5-0.6-0.4
Sr content in liver0.30.30.6-0.40.40.8
Zn content in liver0.40.40.60.4-0.8-0.8
Bone: minimum diameter0.51.01.90.6-1.4-0.8
Time in familiar zone, hab. session 12.52.43.3-1.61.81.2
Time in novel zone, hab. session 10.10.10.1-0.3-0.10.4
Total zone transitions, hab. session 11.62.22.91.7-1.3-1.4
Total locomotion distance, hab. session 11.82.63.31.6-1.5-1.8
Locomotion velocity, hab. session 12.13.03.21.8-1.8-1.6
Time in familiar zone, hab. session 21.01.01.5-0.61.21.0
Time in novel zone, hab. session 20.20.20.5-0.1-0.7-0.5
Total zone transitions, hab. session 20.50.60.90.6-1.0-0.7
Total locomotion distance, hab. session 21.01.32.10.9-1.1-1.4
Locomotion velocity, hab. session 21.21.62.11.1-1.3-1.5
Novel to familiar place preference ratio1.51.62.8-1.70.81.1
Novelty place preference1.51.52.9-1.70.81.1
Time in novel zone, NPP test2.12.13.7-1.91.01.3
Total zone transitions, NPP test1.72.42.81.4-1.5-1.7
Total locomotion distance, NPP test1.52.02.41.2-1.5-1.5
Locomotion velocity, NPP test2.43.44.11.7-2.0-1.8
Intraocular pressure0.40.61.00.90.0-1.0
Delta distance traveled before/after self-admin0.20.20.40.6-0.6-0.1
Delta ambulatory time before/after self-admin0.20.20.40.6-0.6-0.1
Parametrial fat weight0.10.10.3-0.10.20.5
Pavlov. Cond. lever latency0.10.10.2-0.00.30.4
Pavlov. Cond. magazine entry latency0.10.20.4-0.40.60.1
Pavlov. Cond. change in total contacts0.10.10.2-0.30.3-0.5
Pavlov. Cond. index score0.30.40.6-0.80.70.4
Pavlov. Cond. latency score0.20.30.4-0.70.60.2
Pavlov. Cond. lever contacts0.00.00.1-0.1-0.2-0.1
Pavlov. Cond. magazine entry number1.11.42.21.2-1.5-0.6
Pavlov. Cond. intertrial magazine entries0.00.00.1-0.10.2-0.2
Pavlov. Cond. lever-magazine prob. diff.0.20.20.4-0.70.40.2
Pavlov. Cond. response bias0.20.20.4-0.60.40.4
Pavlov. Cond. lever latency0.10.10.20.2-0.50.1
Pavlov. Cond. magazine entry latency0.30.40.60.8-0.5-0.5
Pavlov. Cond. change in total contacts0.30.40.6-0.80.70.3
Pavlov. Cond. index score0.00.00.1-0.10.20.0
Pavlov. Cond. latency score0.00.00.00.10.1-0.1
Pavlov. Cond. lever contacts0.20.30.5-0.50.70.5
Pavlov. Cond. magazine entry number0.00.00.0-0.20.00.0
Pavlov. Cond. intertrial magazine entries1.11.42.61.1-0.7-1.6
Pavlov. Cond. lever-magazine prob. diff.0.00.00.00.10.1-0.1
Pavlov. Cond. response bias0.00.10.1-0.10.20.3
Time in closed arm before self-admin2.02.23.5-1.91.51.0
Time in closed arm after self-admin0.10.10.3-0.30.50.2
Time in open arm before self-admin1.71.83.31.8-0.8-1.3
Time in open arm after self-admin0.30.40.6-0.70.20.8
Bone: periosteal estimation0.10.20.2-0.4-0.50.2
Bone: periosteal perimeter0.10.20.4-0.6-0.40.3
Bone: post-yield work0.20.30.40.5-0.6-0.4
Progressive ratio test 1 active lever presses1.01.12.10.8-0.7-1.5
Progressive ratio test 1 breakpoint1.01.01.90.8-0.6-1.4
Progressive ratio test 1 inactive lever presses0.60.71.00.8-1.0-0.6
Progressive ratio test 2 active lever presses0.70.81.40.7-0.7-1.2
Progressive ratio test 2 breakpoint1.41.62.51.0-1.1-1.6
Progressive ratio test 2 inactive lever presses0.30.40.50.7-0.5-0.7
Incentive Sensitization - Responses0.40.40.50.7-0.7-0.6
Incentive Sensitization - Breakpoint0.70.70.90.9-0.9-0.8
Sum of active levers in priming session hrs 5-61.51.42.1-1.11.01.5
Progressive ratio0.20.20.4-0.50.7-0.2
Food seeking constrained by brief footshock0.50.61.40.4-1.2-0.4
Seeking ratio, punishment vs. effort0.50.61.30.6-1.20.1
Retroperitoneal fat weight1.03.23.91.7-2.0-1.7
Reaction time number correct0.81.11.91.2-0.2-1.4
Reaction time mean minus median1.31.82.7-1.21.11.6
Reaction time mean minus median AUC0.60.81.1-0.80.81.1
Reaction time num false alarms0.91.31.71.1-1.0-1.3
Reaction time num false alarms AUC1.31.71.91.4-1.2-1.4
Reaction time trials correct on left0.81.11.91.2-0.2-1.4
Reaction time trials on left0.71.01.71.1-0.1-1.3
Reaction time mean2.94.04.1-2.02.02.0
Reaction time mean AUC2.63.44.1-1.82.01.7
Median of all reaction times2.83.94.5-2.02.11.8
Reaction time omissions0.71.01.5-0.70.91.2
Reaction time false alarm rate0.40.61.00.7-1.0-0.5
Reaction time premature initiation rate0.10.10.1-0.3-0.3-0.1
Reaction time premature initiations0.20.30.60.3-0.4-0.7
Std. dev. reaction times2.23.14.4-1.61.52.1
Reaction time trials completed0.71.01.71.1-0.1-1.3
Reaction time trials AUC0.60.91.51.1-0.0-1.2
Run reversals in cocaine runway, females0.40.30.50.5-0.7-0.6
Run reversals in cocaine runway, males0.60.51.00.8-0.0-1.0
Latency to leave start box in cocaine runway3.03.33.41.9-1.8-1.8
Latency to leave start box in cocaine runway, F1.21.41.91.3-1.4-0.6
Latency to leave start box in cocaine runway, M2.22.13.71.3-0.9-1.9
Std. dev. time between licks in bursts0.20.20.40.3-0.70.3
Total sessions with >9 infusions1.31.43.00.9-0.6-1.7
Short access day 1 total inactive lever presses0.60.71.11.1-0.7-0.6
Short access day 10 total inactive lever presses0.00.00.10.10.30.1
Short access day 1 total infusions1.01.01.61.1-0.6-1.3
Short access day 10 total infusions0.70.80.9-0.80.9-0.9
Short access total infusions0.50.61.60.10.2-1.3
Short access day 1 locomotion0.10.10.20.4-0.2-0.5
Short access day 10 total locomotion0.00.00.1-0.1-0.30.2
Short access total locomotion0.40.40.50.6-0.6-0.7
One hour access (0.3 mA shock)3.74.36.0-2.42.21.4
Compulsive drug intake0.80.81.8-0.80.21.3
One hour access (shock baseline)1.21.42.2-1.41.50.2
Social response proportion0.50.61.1-0.51.00.7
Social responses1.11.43.1-0.71.80.8
Social time3.64.77.9-1.82.81.8
Soleus weight1.95.59.82.3-3.1-1.2
Bone: stiffness0.91.41.81.1-1.3-1.1
Tibialis anterior weight3.211.113.53.7-3.3-2.9
Time to tail flick, vehicle, before self-admin0.80.91.1-0.90.81.0
Time to tail flick, vehicle, after self-admin0.20.20.5-0.70.50.1
Time to tail flick, test, before self-admin0.60.61.20.7-0.1-1.1
Time to tail flick, test, after self-admin0.10.10.1-0.10.3-0.3
Delta time to tail flick, vehicle, before/after SA0.10.10.20.1-0.4-0.5
Delta time to tail flick, test, before/after SA1.31.21.4-1.21.20.9
Tibia length0.10.30.4-0.4-0.60.6
Ambulatory time before self-admin0.20.20.5-0.30.20.7
Ambulatory time after self-admin0.60.61.11.0-0.90.0
Bone: tissue strength0.60.50.90.5-0.7-0.9
Total heroin consumption0.81.01.1-1.01.00.9
Bone: trabecular number1.52.33.3-1.80.81.7
Bone: trabecular spacing1.62.13.11.4-1.1-1.8
Bone: trabecular thickness2.53.04.3-2.11.01.9
Bone: trabecular tissue density0.40.50.80.9-0.8-0.3
Water consumed over 24 hours0.20.20.5-0.1-0.1-0.7
Number of responses in last shaping day0.10.10.30.20.50.1