LOC108351595

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Brain gene expression LOC108351595 0.07 0.05 6.5e-05 0.04 0.04 0.04 0.04 1.7e-04 2.9e-04 1.9e-04 3.2e-04
2 PL gene expression LOC108351595 0.07 0.05 1.5e-06 0.05 0.05 0.06 0.05 3.2e-06 1.6e-06 1.2e-06 3.6e-06
3 NAcc intron excision ratio chr7_7632155_7632979 0.03 0.02 1.0e-02 0.02 0.01 0 0.01 4.2e-03 8.9e-03 1.0e-01 6.9e-03

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
Bone: apparent density1.93.26.6-0.5-1.7-2.6
Area under the delay curve1.61.72.6-1.6-1.5-0.3
BMI with tail3.511.321.4-4.6-3.50.7
BMI without tail1.02.03.9-2.0-1.20.9
Body weight0.72.85.5-2.3-1.60.6
Weight adjusted by age0.20.20.5-0.3-0.00.7
Bone surface3.56.214.4-0.2-2.1-3.8
Bone volume3.56.013.8-0.3-2.0-3.7
Breakpoint value in progressive ratio session3.74.16.72.62.30.4
Number of licking bursts0.50.51.3-0.00.61.1
Context. condit. distance diff. score0.20.20.5-0.7-0.50.2
Locomotion velocity, session 10.60.61.60.6-0.2-1.3
Locomotion distance, session 11.01.22.9-0.0-0.9-1.7
Locomotion velocity, session 22.12.44.21.70.4-2.0
Locomotion distance, session 21.31.84.21.1-0.1-2.1
Locomotion velocity, session 33.64.17.52.72.2-0.1
Locomotion distance, session 30.10.10.10.20.30.3
Stereotopy head waving bouts, day 32.22.64.92.21.4-1.0
Stereotopy head waving duration, day 32.83.36.22.51.7-0.8
Locomotion velocity, session 70.40.40.70.90.4-0.6
Locomotion distance, session 70.30.30.8-0.00.40.9
Stereotopy head waving bouts, day 70.91.02.1-0.3-0.9-1.5
Stereotopy head waving duration, day 70.91.12.80.0-0.8-1.7
Locomotion velocity, session 81.31.53.90.3-0.8-2.0
Locomotion distance, session 80.10.20.40.2-0.2-0.7
Degree of sensitization distance0.30.30.5-0.7-0.6-0.1
Degree of sensitization stereotypy2.12.33.4-1.6-1.8-1.0
Conditioned locomotion1.01.22.4-1.0-0.11.6
Cocaine response after cond. corrected2.32.64.1-2.0-0.91.6
Cocaine response after cond. not corrected2.72.94.3-2.1-0.91.9
Cocaine response before conditioning0.20.20.40.70.4-0.2
Saline control response0.10.10.2-0.10.10.4
Bone: connectivity density1.52.33.7-0.8-1.6-1.9
Bone: cortical apparent density0.81.02.0-1.4-1.00.2
Bone: cortical area1.52.23.1-1.2-1.8-1.4
Bone: cortical porosity0.30.30.50.60.1-0.7
Bone: cortical porosity0.50.61.2-0.2-0.7-1.1
Bone: cortical thickness1.11.92.7-1.6-1.6-0.6
Bone: cortical thickness0.30.30.60.20.60.8
Bone: cortical tissue density0.60.71.4-1.2-0.90.2
Condit. Reinf. active minus inactive responses2.12.44.72.21.6-0.4
Condit. Reinf. active-inactive response ratio1.71.82.81.71.60.5
Condit. Reinf. active responses1.62.03.61.91.0-1.2
Condit. Reinf. inactive responses0.70.82.10.7-0.2-1.4
Incentive salience index mean1.01.22.11.40.6-1.1
Condit. Reinf. lever presses1.41.94.0-0.3-1.2-2.0
Condit. Reinf. active minus inactive responses2.42.94.11.92.00.9
Condit. Reinf. active-inactive response ratio1.71.83.10.71.41.8
Condit. Reinf. active responses1.52.13.71.91.60.1
Condit. Reinf. inactive responses0.60.81.31.10.5-0.9
Condit. Reinf. lever presses2.02.74.02.02.00.5
Condit. Reinf. lever reinforcers received1.42.03.21.81.60.4
Conditioned reinforcement - actives1.21.22.11.41.1-0.5
Conditioned reinforcement - inactives0.70.71.7-0.70.11.3
Conditioned locomotion4.45.39.33.02.5-0.3
Patch foraging indifference point 0 sec0.10.20.3-0.5-0.5-0.1
Patch foraging indifference point AUC0.60.71.31.10.9-0.0
Delay disc. indifference point, 0s delay7.27.911.7-3.2-3.4-1.5
Delay disc. indifference point, 16s delay0.20.20.2-0.5-0.5-0.2
Delay disc. indifference point, 2s delay4.34.87.5-2.7-2.5-0.7
Delay disc. indifference point, 24s delay0.30.30.4-0.7-0.6-0.1
Delay disc. indifference point, 4s delay1.51.62.3-1.2-1.5-0.9
Delay disc. indifference point, 8s delay0.50.50.8-0.9-0.50.7
Indifference point function ln k0.10.20.4-0.6-0.40.2
Indifference point function log k0.10.20.4-0.6-0.40.2
Patch foraging total patch changes 0 sec0.10.10.2-0.4-0.30.1
Patch foraging total patch changes 12 sec0.20.30.6-0.30.10.8
Patch foraging total patch changes 18 sec0.50.61.01.00.80.1
Patch foraging total patch changes 24 sec0.00.00.00.20.1-0.2
Patch foraging total patch changes 6 sec0.10.20.30.50.5-0.0
Patch foraging time to switch 0 sec1.62.53.7-1.7-1.9-0.9
Patch foraging water rate 0 sec0.71.11.80.61.11.3
Patch foraging water rate 12 sec0.71.02.2-1.0-0.11.5
Patch foraging water rate 18 sec2.63.56.00.91.92.4
Patch foraging water rate 24 sec2.73.88.90.11.53.0
Patch foraging water rate 6 sec1.72.53.51.01.71.9
Seeking ratio, delayed vs. immediate footshock2.42.85.12.31.6-0.9
Distance traveled before self-admin0.40.40.5-0.6-0.7-0.5
Distance traveled after self-admin0.50.50.90.90.7-0.4
Extensor digitorum longus weight2.18.415.7-4.0-2.32.0
Bone: elastic displacement0.10.20.30.60.3-0.2
Bone: elastic work0.40.50.7-0.6-0.8-0.6
Bone: endosteal estimation0.40.81.2-0.8-1.1-0.8
Bone: endosteal perimeter0.40.82.00.4-0.4-1.4
Epididymis fat weight0.30.71.00.81.00.7
Delta time in closed arm before/after self-admin1.71.74.2-0.30.92.0
Delta time in open arm before/after self-admin1.11.11.9-1.4-1.2-0.1
Diff in mean of infusions in LGA sessions1.11.22.41.61.1-0.0
Delay discount exponential model param1.41.52.31.51.40.3
Extinction: sum of active levers before priming1.81.82.51.31.61.1
Active lever presses in extinction session 61.51.52.91.71.2-0.5
Bone: final force1.62.63.8-1.6-1.9-1.2
Bone: final moment1.42.33.3-1.5-1.8-1.2
Food consumed during 24 hour testing period0.30.30.6-0.8-0.6-0.0
Glucose0.60.91.6-1.3-0.90.4
Heart weight0.50.71.10.81.00.6
Delay discount hyperbolic model param2.02.13.31.81.70.3
Intermittent access intake day 1-15 change4.74.67.52.72.50.3
Intermittent access intake escalation6.56.49.22.93.01.3
Intermittent access intake escalation 27.37.210.43.13.21.1
Intermitt. access day 1 inactive lever presses1.01.01.41.01.20.9
Intermitt. access day 15 inactive lever presses0.50.60.80.80.90.6
Intermitt. access escalation Index1.61.42.0-0.7-1.3-1.4
Intermittent access day 1 total infusions0.20.20.4-0.6-0.4-0.1
Intermittent access day 15 total infusions1.41.62.51.41.60.7
Intermittent access terminal intake (last 3 days)0.50.50.80.90.9-0.1
Intermittent access total infusions0.10.20.30.20.50.4
Intermittent access day 1 locomotion0.20.20.40.40.60.4
Intermittent access day 15 total locomotion2.32.43.61.91.90.5
Intermittent access total locomotion0.50.60.80.90.90.1
Intermittent access standard deviation2.22.33.51.81.90.4
Left kidney weight0.30.71.7-0.1-0.6-1.3
Right kidney weight0.71.93.51.91.2-0.8
Cocaine induced anxiety0.70.82.00.7-0.1-1.4
Post-drug Anxiety1.31.43.70.4-0.6-1.9
Baseline Anxiety0.20.20.30.20.40.6
Tail length2.36.811.23.33.00.4
Length with tail0.93.36.22.51.9-0.3
Length without tail0.20.40.8-0.1-0.6-0.9
Times rat made contact with spout0.30.41.0-0.20.21.0
Lifetime Intake0.00.00.0-0.00.10.0
Liver weight, left1.01.63.2-1.8-1.10.7
Liver weight, right0.91.52.9-1.7-1.30.1
Locomotor activity1.42.24.02.01.1-1.2
Locomotor testing distance0.81.42.61.60.9-0.8
Locomotor testing rearing0.10.10.20.20.30.4
Locomotion in novel chamber0.40.40.70.80.80.1
Locomotion in novel chamber post-restriction0.40.50.80.90.7-0.3
Fecal boli incidents, locomotor time 10.90.91.5-1.1-0.31.2
Change in fecal boli incidents, locomotor task0.90.82.10.2-0.5-1.5
Time >=10cm from walls, locomotor time 11.01.01.3-0.7-1.1-1.2
Bouts of movement, locomotor time 10.00.00.10.20.20.0
Total resting periods, locomotor time 10.10.10.10.30.2-0.2
Rest time, locomotor task time 10.10.10.20.3-0.0-0.5
Distance moved, locomotor task time 11.01.11.4-0.8-1.2-1.1
Vertical activity count, locomotor time 10.00.00.1-0.20.00.3
Time >=10cm from walls, locomotor time 20.40.40.6-0.8-0.40.6
Bouts of movement, locomotor time 20.40.40.90.5-0.2-1.0
Total resting periods, locomotor time 20.50.61.30.4-0.4-1.2
Rest time, locomotor task time 20.40.40.80.60.1-0.9
Distance moved, locomotor task time 20.40.50.8-0.8-0.30.9
Vertical activity count, locomotor time 20.70.81.7-0.70.01.3
Light reinforcement 12.95.39.93.22.4-0.4
Light reinforcement 20.91.32.31.51.2-0.1
Bone: marrow area0.40.81.2-0.9-1.1-0.7
Bone: maximum diameter0.61.23.00.6-0.3-1.7
Bone: maximum force1.52.53.7-1.7-1.9-1.0
Bone: maximum moment1.32.33.3-1.6-1.8-0.9
Mean time between licks in bursts2.63.76.02.52.20.1
Mean num. licks in bursts0.00.00.1-0.1-0.3-0.3
Cd content in liver0.10.20.2-0.5-0.4-0.1
Co content in liver0.70.81.20.91.10.5
Cu content in liver0.70.81.3-0.4-1.0-1.2
Fe content in liver0.20.30.50.30.50.7
K content in liver0.60.61.3-0.1-0.7-1.1
Mg content in liver0.91.02.1-0.2-0.9-1.4
Mn content in liver2.32.66.90.4-0.9-2.6
Na content in liver1.11.11.7-1.1-1.3-0.6
Rb content in liver1.21.52.0-0.8-1.4-1.4
Se content in liver0.10.10.10.40.2-0.3
Sr content in liver1.00.91.80.30.91.3
Zn content in liver3.84.25.82.02.41.7
Bone: minimum diameter0.40.71.3-0.3-0.9-1.1
Time in familiar zone, hab. session 11.61.52.41.51.50.1
Time in novel zone, hab. session 11.71.72.6-1.2-1.6-1.0
Total zone transitions, hab. session 10.71.02.20.8-0.1-1.5
Total locomotion distance, hab. session 11.62.35.90.8-0.6-2.4
Locomotion velocity, hab. session 11.21.73.81.1-0.1-1.9
Time in familiar zone, hab. session 25.25.38.22.92.70.7
Time in novel zone, hab. session 24.44.46.2-2.5-2.5-0.9
Total zone transitions, hab. session 21.52.03.2-0.7-1.5-1.8
Total locomotion distance, hab. session 20.71.02.10.90.0-1.4
Locomotion velocity, hab. session 21.01.33.20.8-0.2-1.8
Novel to familiar place preference ratio4.44.56.4-2.3-2.5-1.4
Novelty place preference3.03.14.3-1.8-2.1-1.3
Time in novel zone, NPP test3.13.14.4-1.9-2.1-1.2
Total zone transitions, NPP test0.30.40.9-0.2-0.6-0.9
Total locomotion distance, NPP test0.71.01.9-0.3-0.9-1.4
Locomotion velocity, NPP test0.50.81.8-0.0-0.7-1.4
Intraocular pressure0.91.32.20.61.21.5
Delta distance traveled before/after self-admin0.91.01.71.31.1-0.1
Delta ambulatory time before/after self-admin0.80.91.61.30.8-0.6
Parametrial fat weight0.40.91.21.11.10.3
Pavlov. Cond. lever latency0.70.81.60.30.91.3
Pavlov. Cond. magazine entry latency1.72.23.71.91.60.2
Pavlov. Cond. change in total contacts0.00.00.10.30.1-0.1
Pavlov. Cond. index score0.30.30.70.5-0.0-0.9
Pavlov. Cond. latency score0.50.61.50.4-0.3-1.2
Pavlov. Cond. lever contacts0.91.12.5-0.1-0.9-1.6
Pavlov. Cond. magazine entry number0.30.40.8-0.9-0.60.1
Pavlov. Cond. intertrial magazine entries0.50.60.90.50.80.9
Pavlov. Cond. lever-magazine prob. diff.0.40.50.70.80.2-0.8
Pavlov. Cond. response bias0.50.61.31.10.8-0.2
Pavlov. Cond. lever latency0.50.61.1-1.1-0.80.3
Pavlov. Cond. magazine entry latency0.20.20.30.60.3-0.6
Pavlov. Cond. change in total contacts0.60.81.41.21.10.1
Pavlov. Cond. index score0.50.71.21.10.9-0.2
Pavlov. Cond. latency score0.40.50.90.90.6-0.4
Pavlov. Cond. lever contacts0.60.81.31.11.10.1
Pavlov. Cond. magazine entry number0.40.50.8-0.9-0.50.6
Pavlov. Cond. intertrial magazine entries0.40.51.2-0.5-0.01.1
Pavlov. Cond. lever-magazine prob. diff.0.50.61.11.00.7-0.4
Pavlov. Cond. response bias1.31.82.91.71.60.2
Time in closed arm before self-admin1.31.42.1-1.2-1.5-0.9
Time in closed arm after self-admin0.10.10.10.30.40.1
Time in open arm before self-admin1.11.21.91.41.20.2
Time in open arm after self-admin0.50.51.0-1.0-0.60.5
Bone: periosteal estimation1.22.43.3-1.2-1.8-1.6
Bone: periosteal perimeter0.81.32.8-0.2-1.0-1.7
Bone: post-yield work0.50.61.2-1.1-0.80.1
Progressive ratio test 1 active lever presses0.20.20.3-0.4-0.00.5
Progressive ratio test 1 breakpoint0.20.20.3-0.6-0.20.4
Progressive ratio test 1 inactive lever presses0.00.00.0-0.00.00.0
Progressive ratio test 2 active lever presses0.30.30.40.50.70.5
Progressive ratio test 2 breakpoint0.10.10.30.50.4-0.1
Progressive ratio test 2 inactive lever presses0.00.00.00.10.0-0.2
Incentive Sensitization - Responses0.40.40.60.70.80.4
Incentive Sensitization - Breakpoint0.30.40.60.80.70.1
Sum of active levers in priming session hrs 5-60.00.00.00.10.10.2
Progressive ratio0.10.10.3-0.3-0.10.6
Food seeking constrained by brief footshock0.10.10.10.30.3-0.0
Seeking ratio, punishment vs. effort0.00.10.10.30.2-0.3
Retroperitoneal fat weight0.30.91.4-1.2-0.51.1
Reaction time number correct0.50.71.7-0.60.11.3
Reaction time mean minus median0.40.51.01.00.6-0.5
Reaction time mean minus median AUC1.21.53.4-0.3-1.0-1.9
Reaction time num false alarms0.00.10.1-0.10.10.4
Reaction time num false alarms AUC0.20.20.5-0.20.20.7
Reaction time trials correct on left0.50.71.7-0.60.11.3
Reaction time trials on left0.40.61.5-0.60.11.2
Reaction time mean0.70.91.9-0.3-0.9-1.4
Reaction time mean AUC0.70.91.7-0.4-0.9-1.3
Median of all reaction times1.01.41.7-0.9-1.3-1.3
Reaction time omissions0.10.20.40.30.1-0.7
Reaction time false alarm rate0.00.00.1-0.1-0.2-0.2
Reaction time premature initiation rate1.31.72.51.31.61.0
Reaction time premature initiations1.82.53.21.11.81.8
Std. dev. reaction times0.30.41.10.4-0.1-1.0
Reaction time trials completed0.40.61.5-0.60.11.2
Reaction time trials AUC0.60.82.1-0.50.31.5
Run reversals in cocaine runway, females0.40.40.80.70.1-0.9
Run reversals in cocaine runway, males0.70.70.91.00.5-0.9
Latency to leave start box in cocaine runway1.01.02.50.7-0.2-1.6
Latency to leave start box in cocaine runway, F2.22.44.9-0.4-1.4-2.2
Latency to leave start box in cocaine runway, M3.02.93.91.92.01.0
Std. dev. time between licks in bursts0.91.12.70.7-0.1-1.6
Total sessions with >9 infusions0.50.61.2-0.3-0.7-1.1
Short access day 1 total inactive lever presses0.00.00.10.20.20.0
Short access day 10 total inactive lever presses0.50.50.70.50.70.8
Short access day 1 total infusions0.50.51.3-0.1-0.5-1.1
Short access day 10 total infusions0.00.00.0-0.2-0.1-0.1
Short access total infusions0.30.30.6-0.4-0.5-0.8
Short access day 1 locomotion0.20.30.40.60.3-0.5
Short access day 10 total locomotion2.93.24.82.22.20.5
Short access total locomotion0.30.30.40.70.5-0.3
One hour access (0.3 mA shock)0.20.20.4-0.6-0.30.3
Compulsive drug intake0.50.50.8-0.9-0.9-0.2
One hour access (shock baseline)0.20.30.60.10.50.7
Social response proportion0.30.40.60.80.3-0.6
Social responses3.74.78.62.91.7-1.6
Social time0.40.50.9-1.0-0.50.6
Soleus weight5.115.028.2-5.3-4.00.6
Bone: stiffness2.43.85.8-2.4-2.3-0.6
Tibialis anterior weight0.51.83.4-1.9-1.40.1
Time to tail flick, vehicle, before self-admin0.90.92.40.5-0.3-1.6
Time to tail flick, vehicle, after self-admin0.60.70.80.60.90.9
Time to tail flick, test, before self-admin1.21.12.8-0.0-0.7-1.7
Time to tail flick, test, after self-admin0.20.20.70.2-0.2-0.8
Delta time to tail flick, vehicle, before/after SA1.11.12.8-0.30.51.7
Delta time to tail flick, test, before/after SA0.80.71.20.40.91.1
Tibia length0.61.83.11.81.50.2
Ambulatory time before self-admin0.20.20.3-0.5-0.5-0.2
Ambulatory time after self-admin0.20.30.40.70.5-0.3
Bone: tissue strength1.71.62.7-1.6-1.4-0.3
Total heroin consumption1.01.22.31.51.0-0.5
Bone: trabecular number0.91.43.50.8-0.3-1.9
Bone: trabecular spacing2.22.87.0-0.21.22.7
Bone: trabecular thickness4.85.712.0-0.6-2.2-3.5
Bone: trabecular tissue density1.41.93.3-1.8-0.81.3
Water consumed over 24 hours1.01.21.8-1.0-1.3-1.0
Number of responses in last shaping day0.00.00.00.20.2-0.2