LOC108351525

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 PL alternative polyA XR_001838998.3 0.03 0.03 1.0e-02 -0 0.01 0 0 5.5e-01 1.5e-02 2.1e-01 1.8e-01
2 PL alternative polyA XR_010053907.1 0.03 0.03 9.2e-03 -0 0.01 0.01 0 4.3e-01 1.2e-02 1.3e-02 1.1e-01
3 PL isoform ratio XR_010053907.1 0.07 0.05 5.7e-03 0.02 0.02 0.02 0.02 1.3e-03 4.5e-03 3.0e-03 1.4e-03

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
Bone: apparent density1.11.82.61.6-1.6-0.6
Area under the delay curve0.30.31.00.0-0.01.0
BMI with tail5.318.423.1-4.84.83.0
BMI without tail1.85.47.8-2.82.80.8
Body weight2.19.111.5-3.43.42.1
Weight adjusted by age3.45.25.8-2.42.42.0
Bone surface0.30.60.80.9-0.90.6
Bone volume0.71.21.81.3-1.30.2
Breakpoint value in progressive ratio session0.60.71.1-0.70.71.0
Number of licking bursts0.20.30.50.7-0.7-0.4
Context. condit. distance diff. score1.21.52.3-1.51.5-0.1
Locomotion velocity, session 10.10.10.4-0.0-0.00.6
Locomotion distance, session 11.72.23.31.8-1.8-0.2
Locomotion velocity, session 20.50.60.9-0.70.61.0
Locomotion distance, session 20.91.31.91.3-1.4-0.3
Locomotion velocity, session 31.31.54.00.5-0.4-2.0
Locomotion distance, session 30.20.20.5-0.00.0-0.7
Stereotopy head waving bouts, day 30.70.81.21.1-1.1-0.1
Stereotopy head waving duration, day 30.80.91.21.1-1.1-0.7
Locomotion velocity, session 70.50.60.8-0.80.9-0.6
Locomotion distance, session 70.10.10.2-0.40.4-0.2
Stereotopy head waving bouts, day 71.11.21.31.2-1.1-1.0
Stereotopy head waving duration, day 71.72.12.51.4-1.3-1.6
Locomotion velocity, session 80.20.30.4-0.60.6-0.2
Locomotion distance, session 80.50.81.0-1.01.00.5
Degree of sensitization distance1.41.41.9-1.11.11.4
Degree of sensitization stereotypy0.91.01.70.8-0.8-1.3
Conditioned locomotion0.50.60.9-0.91.0-0.1
Cocaine response after cond. corrected0.40.40.6-0.80.80.3
Cocaine response after cond. not corrected1.01.11.7-1.31.30.3
Cocaine response before conditioning0.91.01.5-1.21.20.4
Saline control response2.22.93.0-1.71.71.7
Bone: connectivity density1.11.82.31.5-1.5-0.8
Bone: cortical apparent density1.62.22.61.6-1.6-1.2
Bone: cortical area2.64.05.3-1.91.82.3
Bone: cortical porosity0.91.02.2-0.60.61.5
Bone: cortical porosity1.71.83.5-1.01.01.9
Bone: cortical thickness0.40.61.0-0.70.71.0
Bone: cortical thickness0.81.01.4-1.21.20.4
Bone: cortical tissue density1.52.12.41.5-1.5-1.2
Condit. Reinf. active minus inactive responses4.55.06.2-2.52.51.6
Condit. Reinf. active-inactive response ratio0.91.01.4-1.21.20.4
Condit. Reinf. active responses4.55.56.8-2.62.61.7
Condit. Reinf. inactive responses2.02.52.8-1.71.71.3
Incentive salience index mean6.07.48.7-2.93.02.2
Condit. Reinf. lever presses3.75.15.9-2.42.41.9
Condit. Reinf. active minus inactive responses1.31.74.0-0.70.72.0
Condit. Reinf. active-inactive response ratio0.50.51.0-0.50.51.0
Condit. Reinf. active responses2.63.66.9-1.41.42.6
Condit. Reinf. inactive responses1.31.72.6-1.21.11.6
Condit. Reinf. lever presses3.85.25.9-2.22.22.4
Condit. Reinf. lever reinforcers received2.43.46.7-1.31.32.6
Conditioned reinforcement - actives0.50.91.4-0.90.81.2
Conditioned reinforcement - inactives0.00.00.0-0.20.20.2
Conditioned locomotion1.82.32.9-1.71.71.1
Patch foraging indifference point 0 sec0.71.41.8-1.31.30.7
Patch foraging indifference point AUC0.91.44.1-0.20.12.0
Delay disc. indifference point, 0s delay3.03.35.3-1.51.52.3
Delay disc. indifference point, 16s delay0.20.30.8-0.20.20.9
Delay disc. indifference point, 2s delay1.51.64.30.5-0.62.1
Delay disc. indifference point, 24s delay0.91.11.5-1.21.20.5
Delay disc. indifference point, 4s delay0.20.20.60.3-0.30.8
Delay disc. indifference point, 8s delay0.10.10.20.4-0.40.1
Indifference point function ln k1.42.43.6-1.91.90.1
Indifference point function log k1.42.43.6-1.91.90.1
Patch foraging total patch changes 0 sec0.40.71.1-1.01.00.4
Patch foraging total patch changes 12 sec1.11.42.3-0.90.91.5
Patch foraging total patch changes 18 sec0.30.51.00.4-0.41.0
Patch foraging total patch changes 24 sec0.20.41.0-0.20.21.0
Patch foraging total patch changes 6 sec0.30.51.2-0.40.41.1
Patch foraging time to switch 0 sec0.81.72.11.4-1.4-1.0
Patch foraging water rate 0 sec0.91.82.7-1.61.60.5
Patch foraging water rate 12 sec1.94.05.4-2.32.31.2
Patch foraging water rate 18 sec1.82.84.2-2.02.10.2
Patch foraging water rate 24 sec0.40.60.9-0.90.9-0.4
Patch foraging water rate 6 sec0.60.81.2-1.11.10.2
Seeking ratio, delayed vs. immediate footshock1.11.31.31.1-1.1-1.1
Distance traveled before self-admin0.91.21.61.3-1.3-0.7
Distance traveled after self-admin0.60.71.10.7-0.7-1.1
Extensor digitorum longus weight0.62.43.7-1.91.90.2
Bone: elastic displacement0.30.30.30.6-0.6-0.6
Bone: elastic work0.40.50.6-0.80.80.6
Bone: endosteal estimation1.12.42.4-1.61.61.5
Bone: endosteal perimeter4.28.914.2-2.52.53.8
Epididymis fat weight3.010.310.7-3.23.13.3
Delta time in closed arm before/after self-admin0.00.00.10.1-0.10.3
Delta time in open arm before/after self-admin0.00.00.00.1-0.00.0
Diff in mean of infusions in LGA sessions3.03.73.9-1.91.92.0
Delay discount exponential model param0.20.20.6-0.10.1-0.7
Extinction: sum of active levers before priming0.10.10.30.0-0.00.6
Active lever presses in extinction session 61.41.42.0-1.41.40.5
Bone: final force0.10.20.5-0.30.30.7
Bone: final moment0.00.10.2-0.0-0.00.4
Food consumed during 24 hour testing period2.73.75.4-2.32.30.7
Glucose0.10.20.5-0.30.30.7
Heart weight0.30.40.6-0.80.8-0.4
Delay discount hyperbolic model param0.20.30.6-0.30.3-0.8
Intermittent access intake day 1-15 change0.51.01.2-1.11.10.8
Intermittent access intake escalation0.51.11.3-1.11.10.9
Intermittent access intake escalation 22.42.83.3-1.61.61.8
Intermitt. access day 1 inactive lever presses0.31.11.8-0.90.91.4
Intermitt. access day 15 inactive lever presses0.51.01.5-1.21.2-0.3
Intermitt. access escalation Index0.60.80.90.9-0.9-0.9
Intermittent access day 1 total infusions0.10.10.20.2-0.2-0.4
Intermittent access day 15 total infusions0.00.00.0-0.20.20.1
Intermittent access terminal intake (last 3 days)0.91.21.3-1.21.11.1
Intermittent access total infusions0.00.10.1-0.20.10.3
Intermittent access day 1 locomotion0.00.00.1-0.20.20.3
Intermittent access day 15 total locomotion0.91.61.7-1.31.31.2
Intermittent access total locomotion0.70.81.1-1.11.10.5
Intermittent access standard deviation0.00.10.3-0.00.0-0.5
Left kidney weight3.817.622.1-4.74.73.0
Right kidney weight5.625.432.8-5.75.73.3
Cocaine induced anxiety0.30.50.7-0.80.8-0.2
Post-drug Anxiety0.90.91.3-1.11.1-0.5
Baseline Anxiety0.20.30.30.5-0.5-0.5
Tail length0.62.43.11.8-1.8-1.0
Length with tail0.00.10.20.1-0.10.4
Length without tail0.72.43.8-1.31.31.9
Times rat made contact with spout0.91.03.1-0.10.2-1.8
Lifetime Intake0.00.00.0-0.00.00.2
Liver weight, left1.01.62.6-1.11.01.6
Liver weight, right0.10.10.30.0-0.00.5
Locomotor activity1.01.62.8-1.01.01.7
Locomotor testing distance0.30.50.70.8-0.8-0.5
Locomotor testing rearing0.91.85.0-0.50.52.2
Locomotion in novel chamber0.60.72.1-0.20.2-1.4
Locomotion in novel chamber post-restriction0.00.10.10.2-0.20.4
Fecal boli incidents, locomotor time 10.20.30.40.5-0.5-0.6
Change in fecal boli incidents, locomotor task0.30.30.3-0.60.60.4
Time >=10cm from walls, locomotor time 10.60.60.7-0.80.70.8
Bouts of movement, locomotor time 10.20.20.4-0.30.3-0.7
Total resting periods, locomotor time 10.30.30.80.1-0.1-0.9
Rest time, locomotor task time 11.61.92.61.3-1.3-1.6
Distance moved, locomotor task time 11.01.51.7-1.21.21.3
Vertical activity count, locomotor time 11.53.74.1-1.91.92.0
Time >=10cm from walls, locomotor time 21.92.83.0-1.71.71.6
Bouts of movement, locomotor time 20.50.71.01.0-1.0-0.5
Total resting periods, locomotor time 20.40.60.80.9-0.9-0.4
Rest time, locomotor task time 22.22.82.81.7-1.7-1.7
Distance moved, locomotor task time 24.55.46.2-2.52.51.9
Vertical activity count, locomotor time 24.25.86.7-2.62.62.0
Light reinforcement 10.71.82.7-1.21.21.6
Light reinforcement 23.85.97.6-2.32.22.8
Bone: marrow area0.92.02.0-1.41.41.4
Bone: maximum diameter3.56.66.9-2.62.62.4
Bone: maximum force0.10.20.4-0.40.40.6
Bone: maximum moment0.00.00.1-0.10.10.3
Mean time between licks in bursts1.94.65.12.3-2.2-1.9
Mean num. licks in bursts0.20.40.5-0.50.6-0.7
Cd content in liver0.10.10.10.2-0.20.4
Co content in liver0.40.41.2-0.10.11.1
Cu content in liver2.32.74.51.4-1.3-2.1
Fe content in liver0.20.20.60.0-0.10.8
K content in liver0.30.20.30.6-0.6-0.2
Mg content in liver0.60.71.01.0-1.0-0.0
Mn content in liver0.20.20.20.4-0.50.4
Na content in liver1.21.31.91.4-1.40.5
Rb content in liver0.30.40.8-0.40.40.9
Se content in liver0.10.10.2-0.10.1-0.4
Sr content in liver2.11.81.91.4-1.4-1.3
Zn content in liver2.02.22.81.4-1.4-1.7
Bone: minimum diameter1.62.93.9-1.51.52.0
Time in familiar zone, hab. session 10.50.51.20.4-0.4-1.1
Time in novel zone, hab. session 10.20.20.50.3-0.30.7
Total zone transitions, hab. session 11.82.63.71.9-1.9-0.6
Total locomotion distance, hab. session 10.10.10.20.3-0.30.4
Locomotion velocity, hab. session 10.10.20.40.2-0.20.7
Time in familiar zone, hab. session 20.50.60.8-0.90.9-0.5
Time in novel zone, hab. session 20.90.91.31.1-1.1-0.3
Total zone transitions, hab. session 20.00.00.1-0.10.1-0.3
Total locomotion distance, hab. session 20.40.50.6-0.80.80.6
Locomotion velocity, hab. session 20.50.60.7-0.80.80.7
Novel to familiar place preference ratio0.91.02.00.7-0.7-1.4
Novelty place preference0.91.02.10.7-0.6-1.4
Time in novel zone, NPP test1.31.43.00.8-0.8-1.7
Total zone transitions, NPP test0.60.91.01.0-1.0-0.8
Total locomotion distance, NPP test0.10.10.3-0.20.20.5
Locomotion velocity, NPP test0.10.10.4-0.20.20.6
Intraocular pressure1.21.72.6-1.11.11.6
Delta distance traveled before/after self-admin1.21.31.9-1.41.4-0.4
Delta ambulatory time before/after self-admin1.01.31.8-1.31.3-0.5
Parametrial fat weight0.51.11.8-0.90.91.4
Pavlov. Cond. lever latency2.22.82.91.7-1.7-1.6
Pavlov. Cond. magazine entry latency0.20.20.3-0.50.50.3
Pavlov. Cond. change in total contacts1.51.62.2-1.21.11.5
Pavlov. Cond. index score0.50.70.7-0.80.80.8
Pavlov. Cond. latency score0.91.11.1-1.11.01.0
Pavlov. Cond. lever contacts2.02.32.5-1.61.61.4
Pavlov. Cond. magazine entry number0.20.30.30.6-0.6-0.5
Pavlov. Cond. intertrial magazine entries2.02.42.6-1.61.61.4
Pavlov. Cond. lever-magazine prob. diff.0.40.50.6-0.70.70.8
Pavlov. Cond. response bias0.91.11.4-1.21.20.8
Pavlov. Cond. lever latency1.82.53.01.7-1.7-1.1
Pavlov. Cond. magazine entry latency1.92.33.0-1.71.70.9
Pavlov. Cond. change in total contacts1.32.13.2-1.31.21.8
Pavlov. Cond. index score1.92.63.0-1.71.71.3
Pavlov. Cond. latency score2.63.44.2-2.12.11.3
Pavlov. Cond. lever contacts2.12.83.5-1.91.91.2
Pavlov. Cond. magazine entry number2.53.13.91.9-2.0-1.3
Pavlov. Cond. intertrial magazine entries1.01.51.61.3-1.3-1.1
Pavlov. Cond. lever-magazine prob. diff.2.02.73.2-1.81.81.3
Pavlov. Cond. response bias1.11.51.6-1.31.31.1
Time in closed arm before self-admin0.50.61.90.1-0.11.4
Time in closed arm after self-admin1.21.33.7-0.40.41.9
Time in open arm before self-admin0.40.51.20.3-0.3-1.1
Time in open arm after self-admin0.10.10.2-0.20.2-0.4
Bone: periosteal estimation2.24.75.6-2.12.12.4
Bone: periosteal perimeter4.57.710.6-2.52.53.3
Bone: post-yield work0.91.41.51.2-1.2-1.1
Progressive ratio test 1 active lever presses0.50.71.50.5-0.5-1.2
Progressive ratio test 1 breakpoint0.60.71.40.6-0.6-1.2
Progressive ratio test 1 inactive lever presses0.00.10.1-0.20.20.3
Progressive ratio test 2 active lever presses0.30.30.5-0.70.70.4
Progressive ratio test 2 breakpoint0.20.20.3-0.50.50.4
Progressive ratio test 2 inactive lever presses0.60.91.0-1.01.00.9
Incentive Sensitization - Responses1.52.12.4-1.41.41.6
Incentive Sensitization - Breakpoint1.51.92.2-1.31.31.5
Sum of active levers in priming session hrs 5-60.10.00.10.0-0.00.4
Progressive ratio0.10.10.3-0.10.1-0.5
Food seeking constrained by brief footshock1.21.51.8-1.41.30.9
Seeking ratio, punishment vs. effort0.50.71.5-0.50.51.2
Retroperitoneal fat weight3.113.214.1-3.83.73.4
Reaction time number correct0.20.30.40.6-0.6-0.5
Reaction time mean minus median0.20.50.6-0.80.80.6
Reaction time mean minus median AUC0.10.20.3-0.60.60.2
Reaction time num false alarms0.00.00.10.2-0.2-0.0
Reaction time num false alarms AUC0.00.10.20.1-0.1-0.4
Reaction time trials correct on left0.20.30.40.6-0.6-0.5
Reaction time trials on left0.20.40.40.6-0.6-0.5
Reaction time mean0.50.81.60.6-0.6-1.3
Reaction time mean AUC0.50.81.40.7-0.7-1.2
Median of all reaction times1.21.73.60.9-0.9-1.9
Reaction time omissions0.60.91.10.9-0.9-1.1
Reaction time false alarm rate0.00.00.0-0.20.10.0
Reaction time premature initiation rate6.38.79.4-2.92.93.1
Reaction time premature initiations2.64.64.8-2.12.12.2
Std. dev. reaction times0.10.10.2-0.40.5-0.1
Reaction time trials completed0.20.40.40.6-0.6-0.5
Reaction time trials AUC0.10.20.20.4-0.4-0.4
Run reversals in cocaine runway, females0.20.20.60.2-0.2-0.8
Run reversals in cocaine runway, males0.20.20.30.3-0.30.6
Latency to leave start box in cocaine runway0.70.71.1-1.11.1-0.0
Latency to leave start box in cocaine runway, F1.11.21.4-1.21.2-0.9
Latency to leave start box in cocaine runway, M0.70.61.8-0.30.31.3
Std. dev. time between licks in bursts1.11.53.2-0.90.81.8
Total sessions with >9 infusions0.10.10.20.2-0.2-0.4
Short access day 1 total inactive lever presses2.33.14.6-2.12.10.3
Short access day 10 total inactive lever presses3.79.010.5-3.23.22.5
Short access day 1 total infusions0.10.10.1-0.40.4-0.3
Short access day 10 total infusions0.10.20.2-0.50.50.1
Short access total infusions0.00.00.1-0.30.30.0
Short access day 1 locomotion0.10.10.1-0.30.3-0.3
Short access day 10 total locomotion0.20.40.5-0.70.70.4
Short access total locomotion0.10.10.1-0.30.30.2
One hour access (0.3 mA shock)0.91.01.8-0.80.71.4
Compulsive drug intake0.10.20.2-0.50.50.2
One hour access (shock baseline)0.20.41.0-0.20.21.0
Social response proportion0.10.10.3-0.00.00.5
Social responses0.20.20.5-0.30.30.7
Social time0.30.41.1-0.30.3-1.0
Soleus weight0.72.13.1-1.81.80.5
Bone: stiffness0.10.10.20.5-0.5-0.1
Tibialis anterior weight0.10.20.3-0.50.5-0.1
Time to tail flick, vehicle, before self-admin2.62.72.9-1.71.71.5
Time to tail flick, vehicle, after self-admin0.81.01.2-1.11.10.9
Time to tail flick, test, before self-admin0.10.10.2-0.30.30.5
Time to tail flick, test, after self-admin1.21.21.8-1.41.40.0
Delta time to tail flick, vehicle, before/after SA0.80.80.90.9-0.9-0.8
Delta time to tail flick, test, before/after SA0.20.20.2-0.40.4-0.4
Tibia length0.82.33.31.8-1.8-0.6
Ambulatory time before self-admin0.71.01.11.0-1.0-1.0
Ambulatory time after self-admin0.30.41.1-0.10.1-1.1
Bone: tissue strength4.14.24.22.0-2.0-2.0
Total heroin consumption0.40.50.8-0.60.60.9
Bone: trabecular number1.11.82.41.5-1.5-0.7
Bone: trabecular spacing1.21.62.0-1.41.40.8
Bone: trabecular thickness0.40.51.40.0-0.11.2
Bone: trabecular tissue density0.91.42.11.4-1.4-0.2
Water consumed over 24 hours0.10.20.3-0.50.50.0
Number of responses in last shaping day1.21.31.61.3-1.3-0.9