LOC108350745

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Brain gene expression LOC108350745 0.06 0.04 4.0e-05 0.05 0.05 0.04 0.05 1.7e-05 9.5e-06 1.8e-04 3.4e-05
2 NAcc gene expression LOC108350745 0.03 0.02 1.7e-04 0.03 0.03 0.03 0.03 5.3e-04 1.3e-04 1.4e-04 2.7e-04
3 PL gene expression LOC108350745 0.04 0.02 4.7e-05 0.02 0.03 0.02 0.02 1.6e-03 7.3e-04 1.3e-03 2.7e-03
4 IL gene expression LOC108350745 0.4 0.18 9.5e-04 0.16 0.13 0.11 0.11 1.3e-04 5.6e-04 1.1e-03 1.3e-03

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density2.03.48.7-1.1-1.2-1.53.0
Area under the delay curve0.00.00.2-0.10.40.10.1
BMI with tail0.82.53.4-1.6-1.9-1.71.1
BMI without tail0.10.10.2-0.00.0-0.50.5
Body weight0.83.54.0-1.7-1.9-2.01.9
Weight adjusted by age0.00.00.1-0.00.30.2-0.1
Bone surface0.61.03.0-0.4-0.5-0.71.7
Bone volume1.52.56.0-1.0-1.1-1.32.5
Breakpoint value in progressive ratio session8.39.110.3-3.0-2.7-3.13.2
Number of licking bursts0.50.61.10.70.80.11.1
Context. condit. distance diff. score2.93.45.2-2.1-2.3-2.10.3
Locomotion velocity, session 10.10.10.20.10.30.4-0.1
Locomotion distance, session 10.40.50.70.80.90.7-0.1
Locomotion velocity, session 20.91.01.60.81.31.2-0.6
Locomotion distance, session 20.91.32.01.31.41.1-0.2
Locomotion velocity, session 30.50.60.70.80.80.8-0.6
Locomotion distance, session 30.20.20.30.60.50.4-0.3
Stereotopy head waving bouts, day 31.82.13.51.01.91.5-1.3
Stereotopy head waving duration, day 32.02.44.00.81.51.6-2.0
Locomotion velocity, session 70.10.10.20.4-0.10.2-0.3
Locomotion distance, session 71.11.32.9-0.9-1.7-1.20.5
Stereotopy head waving bouts, day 71.71.93.01.01.71.5-1.3
Stereotopy head waving duration, day 72.12.53.91.02.01.7-1.6
Locomotion velocity, session 80.20.30.9-0.2-0.0-0.41.0
Locomotion distance, session 80.91.31.9-1.1-1.3-1.40.6
Degree of sensitization distance1.21.22.9-0.9-1.7-1.00.0
Degree of sensitization stereotypy0.40.41.00.31.00.6-0.5
Conditioned locomotion1.41.74.2-0.3-0.9-1.32.0
Cocaine response after cond. corrected4.85.47.32.72.12.3-2.1
Cocaine response after cond. not corrected8.89.712.13.52.73.2-3.0
Cocaine response before conditioning1.11.42.20.90.91.3-1.5
Saline control response1.82.34.22.11.21.5-1.1
Bone: connectivity density1.11.73.7-0.9-0.9-1.11.9
Bone: cortical apparent density0.10.10.2-0.00.30.3-0.4
Bone: cortical area0.00.00.0-0.0-0.0-0.00.2
Bone: cortical porosity0.10.20.2-0.40.30.4-0.5
Bone: cortical porosity0.10.10.4-0.70.10.1-0.2
Bone: cortical thickness0.10.10.3-0.20.20.3-0.5
Bone: cortical thickness0.10.10.20.40.30.40.4
Bone: cortical tissue density0.10.10.1-0.00.30.3-0.4
Condit. Reinf. active minus inactive responses3.03.44.82.21.22.0-1.8
Condit. Reinf. active-inactive response ratio5.25.67.82.81.92.6-2.2
Condit. Reinf. active responses0.60.71.01.00.31.0-0.9
Condit. Reinf. inactive responses1.41.72.0-1.3-1.1-1.41.3
Incentive salience index mean3.33.94.82.21.52.2-2.0
Condit. Reinf. lever presses1.92.63.01.61.51.7-1.6
Condit. Reinf. active minus inactive responses1.11.32.01.00.81.3-1.4
Condit. Reinf. active-inactive response ratio0.40.41.10.30.10.7-1.0
Condit. Reinf. active responses0.81.11.41.10.71.2-1.1
Condit. Reinf. inactive responses0.20.30.80.90.40.30.1
Condit. Reinf. lever presses0.50.61.41.20.60.7-0.5
Condit. Reinf. lever reinforcers received1.31.92.21.51.01.5-1.4
Conditioned reinforcement - actives2.32.34.4-1.8-2.1-1.30.2
Conditioned reinforcement - inactives0.20.20.4-0.4-0.6-0.1-0.3
Conditioned locomotion1.01.23.0-1.1-1.7-0.80.2
Patch foraging indifference point 0 sec0.30.41.2-0.4-1.1-0.60.3
Patch foraging indifference point AUC3.43.95.22.31.92.0-1.6
Delay disc. indifference point, 0s delay0.20.20.4-0.6-0.4-0.30.4
Delay disc. indifference point, 16s delay0.10.10.3-0.3-0.00.2-0.5
Delay disc. indifference point, 2s delay1.21.42.0-1.4-0.9-1.21.0
Delay disc. indifference point, 24s delay1.01.01.81.01.41.0-0.3
Delay disc. indifference point, 4s delay0.10.10.2-0.10.40.00.3
Delay disc. indifference point, 8s delay0.30.30.80.30.90.5-0.1
Indifference point function ln k2.94.05.1-2.3-2.0-2.11.6
Indifference point function log k2.94.05.1-2.3-2.0-2.11.6
Patch foraging total patch changes 0 sec0.40.61.5-0.6-1.2-0.60.2
Patch foraging total patch changes 12 sec1.01.32.01.40.41.1-1.4
Patch foraging total patch changes 18 sec1.51.93.21.80.91.4-1.4
Patch foraging total patch changes 24 sec0.30.40.90.50.00.5-0.9
Patch foraging total patch changes 6 sec0.60.91.9-0.7-1.4-0.90.5
Patch foraging time to switch 0 sec1.32.03.0-1.5-0.9-1.41.7
Patch foraging water rate 0 sec0.71.12.60.60.21.1-1.6
Patch foraging water rate 12 sec0.00.10.2-0.0-0.4-0.20.0
Patch foraging water rate 18 sec0.30.40.9-0.9-0.7-0.30.0
Patch foraging water rate 24 sec0.60.82.10.7-0.30.8-1.5
Patch foraging water rate 6 sec0.30.41.10.4-0.00.5-1.0
Seeking ratio, delayed vs. immediate footshock0.40.50.9-0.7-0.9-0.80.2
Distance traveled before self-admin1.21.32.11.21.41.2-0.6
Distance traveled after self-admin1.41.62.31.10.81.5-1.5
Extensor digitorum longus weight5.923.227.7-5.3-4.7-5.24.0
Bone: elastic displacement0.60.72.40.1-0.1-0.61.5
Bone: elastic work1.01.33.4-0.5-0.6-1.11.8
Bone: endosteal estimation0.40.91.7-0.7-0.8-0.91.3
Bone: endosteal perimeter0.10.30.50.70.1-0.10.7
Epididymis fat weight0.10.30.8-0.1-0.2-0.50.9
Delta time in closed arm before/after self-admin0.70.61.7-1.3-0.7-0.6-0.1
Delta time in open arm before/after self-admin0.40.40.80.70.90.40.5
Diff in mean of infusions in LGA sessions0.91.02.3-0.1-0.9-0.91.5
Delay discount exponential model param0.10.10.20.1-0.5-0.1-0.1
Extinction: sum of active levers before priming0.40.40.7-0.8-0.6-0.70.3
Active lever presses in extinction session 65.25.07.4-2.7-2.3-2.31.4
Bone: final force0.50.81.6-1.3-1.0-0.70.1
Bone: final moment0.71.11.9-1.4-1.3-0.90.3
Food consumed during 24 hour testing period0.20.30.80.90.40.5-0.0
Glucose2.43.54.7-1.2-2.2-2.02.0
Heart weight0.20.30.4-0.5-0.5-0.60.6
Delay discount hyperbolic model param0.10.10.10.3-0.30.1-0.2
Intermittent access intake day 1-15 change2.12.13.3-1.7-1.8-1.40.2
Intermittent access intake escalation1.41.32.2-1.5-1.4-1.0-0.2
Intermittent access intake escalation 22.22.14.0-2.0-1.4-1.50.5
Intermitt. access day 1 inactive lever presses1.51.61.91.31.21.3-1.4
Intermitt. access day 15 inactive lever presses0.60.70.91.00.70.9-0.7
Intermitt. access escalation Index0.60.51.60.40.6-0.21.3
Intermittent access day 1 total infusions0.80.91.9-0.9-1.4-0.90.4
Intermittent access day 15 total infusions3.33.86.8-2.2-2.6-1.80.5
Intermittent access terminal intake (last 3 days)4.55.08.5-2.5-2.9-2.20.8
Intermittent access total infusions2.42.65.1-1.5-2.3-1.60.8
Intermittent access day 1 locomotion1.71.83.0-1.4-1.7-1.30.8
Intermittent access day 15 total locomotion3.13.35.6-2.2-2.4-1.60.3
Intermittent access total locomotion2.73.06.3-1.9-2.5-1.50.3
Intermittent access standard deviation0.60.71.3-1.2-1.0-0.4-0.4
Left kidney weight2.36.67.72.72.82.7-2.0
Right kidney weight2.26.18.52.72.92.6-1.3
Cocaine induced anxiety0.40.50.80.90.60.8-0.3
Post-drug Anxiety3.43.84.41.92.02.1-1.7
Baseline Anxiety1.11.21.60.91.31.0-1.2
Tail length0.20.61.01.01.00.40.3
Length with tail0.10.31.20.10.1-0.31.1
Length without tail0.00.00.10.1-0.10.30.0
Times rat made contact with spout0.10.10.20.40.30.1-0.1
Lifetime Intake2.22.44.6-1.5-2.1-1.50.8
Liver weight, left0.20.30.91.00.30.40.1
Liver weight, right0.91.51.91.31.41.3-0.8
Locomotor activity0.61.02.41.60.90.8-0.1
Locomotor testing distance1.32.23.51.90.91.4-1.6
Locomotor testing rearing1.92.94.92.21.51.6-1.4
Locomotion in novel chamber0.20.20.50.70.50.4-0.0
Locomotion in novel chamber post-restriction1.01.21.50.91.21.2-0.9
Fecal boli incidents, locomotor time 10.30.30.70.90.60.30.3
Change in fecal boli incidents, locomotor task0.10.10.20.40.00.10.1
Time >=10cm from walls, locomotor time 14.74.86.42.32.52.3-1.5
Bouts of movement, locomotor time 10.70.81.1-0.8-1.0-0.90.8
Total resting periods, locomotor time 11.41.62.1-1.2-1.5-1.31.0
Rest time, locomotor task time 16.67.38.8-2.6-2.6-3.02.7
Distance moved, locomotor task time 15.25.67.32.02.12.6-2.7
Vertical activity count, locomotor time 11.81.92.61.11.41.6-1.3
Time >=10cm from walls, locomotor time 22.02.13.01.71.71.4-0.5
Bouts of movement, locomotor time 21.11.21.31.11.01.1-1.1
Total resting periods, locomotor time 21.41.41.61.21.21.2-1.2
Rest time, locomotor task time 20.70.81.0-1.0-0.5-1.00.9
Distance moved, locomotor task time 20.91.01.60.80.71.1-1.3
Vertical activity count, locomotor time 20.00.10.1-0.3-0.3-0.1-0.1
Light reinforcement 10.20.40.50.60.50.6-0.7
Light reinforcement 20.60.82.3-0.9-0.2-0.61.5
Bone: marrow area0.40.81.6-0.6-0.7-0.91.2
Bone: maximum diameter0.20.40.70.80.80.40.6
Bone: maximum force1.42.44.0-2.0-1.6-1.50.9
Bone: maximum moment1.62.74.1-2.0-1.7-1.61.1
Mean time between licks in bursts1.11.52.5-1.0-0.8-1.31.6
Mean num. licks in bursts0.70.82.9-0.1-0.30.5-1.7
Cd content in liver1.21.32.5-1.1-1.6-1.20.1
Co content in liver3.03.54.8-1.7-1.8-2.21.7
Cu content in liver1.31.62.8-1.7-1.2-1.30.7
Fe content in liver0.50.60.9-0.9-1.0-0.60.4
K content in liver1.41.43.40.51.81.1-0.7
Mg content in liver0.80.91.40.31.21.0-1.0
Mn content in liver0.10.10.1-0.3-0.3-0.2-0.2
Na content in liver1.31.32.10.91.41.3-0.8
Rb content in liver0.10.10.2-0.1-0.00.3-0.5
Se content in liver0.91.12.7-1.6-1.1-0.8-0.1
Sr content in liver0.40.30.60.80.70.40.2
Zn content in liver0.20.20.50.40.40.4-0.7
Bone: minimum diameter0.81.41.9-1.4-1.4-1.30.7
Time in familiar zone, hab. session 10.40.40.90.6-0.20.4-1.0
Time in novel zone, hab. session 10.10.10.2-0.10.40.20.1
Total zone transitions, hab. session 11.21.74.02.01.11.1-0.6
Total locomotion distance, hab. session 10.20.30.90.90.50.4-0.3
Locomotion velocity, hab. session 10.40.51.11.00.80.5-0.2
Time in familiar zone, hab. session 20.00.10.2-0.1-0.1-0.20.4
Time in novel zone, hab. session 20.50.51.60.20.10.6-1.3
Total zone transitions, hab. session 20.81.01.81.31.20.9-0.2
Total locomotion distance, hab. session 21.01.32.01.41.41.1-0.4
Locomotion velocity, hab. session 20.91.22.01.31.41.0-0.3
Novel to familiar place preference ratio0.00.00.10.10.20.1-0.2
Novelty place preference0.10.10.2-0.10.20.1-0.5
Time in novel zone, NPP test0.10.10.3-0.1-0.10.0-0.6
Total zone transitions, NPP test0.60.91.60.80.80.9-1.3
Total locomotion distance, NPP test0.00.00.0-0.10.1-0.0-0.2
Locomotion velocity, NPP test0.10.10.2-0.00.50.1-0.2
Intraocular pressure0.10.20.30.4-0.4-0.20.6
Delta distance traveled before/after self-admin0.30.41.3-0.2-1.1-0.1-0.4
Delta ambulatory time before/after self-admin0.40.41.4-0.2-1.2-0.2-0.3
Parametrial fat weight0.30.61.4-0.2-1.2-0.70.7
Pavlov. Cond. lever latency0.10.20.3-0.60.1-0.30.5
Pavlov. Cond. magazine entry latency1.01.32.11.30.61.0-1.4
Pavlov. Cond. change in total contacts0.10.10.10.40.20.4-0.3
Pavlov. Cond. index score0.40.50.90.90.10.5-0.9
Pavlov. Cond. latency score0.60.71.31.10.20.7-1.2
Pavlov. Cond. lever contacts0.30.30.60.6-0.20.4-0.8
Pavlov. Cond. magazine entry number0.81.01.7-1.1-0.6-0.91.3
Pavlov. Cond. intertrial magazine entries0.50.60.8-0.9-0.9-0.70.6
Pavlov. Cond. lever-magazine prob. diff.0.30.40.70.80.10.5-0.8
Pavlov. Cond. response bias0.60.71.21.00.40.8-1.1
Pavlov. Cond. lever latency0.30.31.1-1.1-0.0-0.40.3
Pavlov. Cond. magazine entry latency0.70.81.21.10.70.8-0.8
Pavlov. Cond. change in total contacts1.72.43.41.91.01.5-1.7
Pavlov. Cond. index score0.81.12.01.40.41.0-1.1
Pavlov. Cond. latency score0.81.01.71.30.51.0-1.1
Pavlov. Cond. lever contacts0.30.41.11.1-0.00.4-0.5
Pavlov. Cond. magazine entry number1.62.03.2-1.4-0.8-1.41.8
Pavlov. Cond. intertrial magazine entries0.10.20.4-0.60.2-0.10.5
Pavlov. Cond. lever-magazine prob. diff.0.91.21.91.40.41.0-1.2
Pavlov. Cond. response bias0.20.30.80.9-0.10.3-0.5
Time in closed arm before self-admin0.00.00.10.10.30.2-0.0
Time in closed arm after self-admin0.40.41.1-1.0-0.5-0.5-0.1
Time in open arm before self-admin0.60.61.1-0.7-1.1-0.90.5
Time in open arm after self-admin0.40.51.40.2-0.1-0.61.2
Bone: periosteal estimation0.30.51.2-0.5-0.5-0.71.1
Bone: periosteal perimeter0.30.51.31.10.70.7-0.1
Bone: post-yield work0.10.10.2-0.3-0.4-0.50.1
Progressive ratio test 1 active lever presses0.30.31.1-0.2-1.1-0.40.2
Progressive ratio test 1 breakpoint0.60.61.7-0.5-1.3-0.60.3
Progressive ratio test 1 inactive lever presses0.00.00.00.0-0.10.2-0.1
Progressive ratio test 2 active lever presses1.61.73.2-1.4-1.8-1.30.6
Progressive ratio test 2 breakpoint1.41.62.8-1.3-1.7-1.20.6
Progressive ratio test 2 inactive lever presses0.20.20.5-0.6-0.7-0.3-0.2
Incentive Sensitization - Responses0.90.91.8-1.0-1.3-0.90.4
Incentive Sensitization - Breakpoint1.11.12.0-1.0-1.4-1.10.5
Sum of active levers in priming session hrs 5-61.21.12.4-1.0-1.6-0.90.6
Progressive ratio0.80.91.7-0.6-0.5-1.21.3
Food seeking constrained by brief footshock5.77.07.8-2.3-2.7-2.82.8
Seeking ratio, punishment vs. effort0.20.30.6-0.7-0.8-0.2-0.1
Retroperitoneal fat weight0.10.20.7-0.30.30.10.8
Reaction time number correct1.01.51.9-1.4-1.2-1.20.9
Reaction time mean minus median0.60.81.90.50.60.9-1.4
Reaction time mean minus median AUC0.50.72.00.20.30.8-1.4
Reaction time num false alarms0.30.40.7-0.8-0.6-0.7-0.1
Reaction time num false alarms AUC0.10.20.2-0.5-0.5-0.5-0.2
Reaction time trials correct on left1.01.51.9-1.4-1.2-1.20.9
Reaction time trials on left0.91.21.7-1.3-1.1-1.10.9
Reaction time mean1.42.03.01.11.11.6-1.7
Reaction time mean AUC1.01.42.30.80.91.3-1.5
Median of all reaction times1.01.42.01.00.91.4-1.4
Reaction time omissions2.02.73.21.51.51.8-1.7
Reaction time false alarm rate0.30.41.00.50.40.5-1.0
Reaction time premature initiation rate2.12.74.01.51.41.7-2.0
Reaction time premature initiations0.91.31.91.01.01.2-1.4
Std. dev. reaction times2.23.15.71.21.31.9-2.4
Reaction time trials completed0.91.21.7-1.3-1.1-1.10.9
Reaction time trials AUC0.91.31.9-1.4-1.2-1.10.8
Run reversals in cocaine runway, females1.81.72.71.71.61.3-0.2
Run reversals in cocaine runway, males0.20.20.30.00.60.5-0.3
Latency to leave start box in cocaine runway4.24.65.32.22.22.3-1.8
Latency to leave start box in cocaine runway, F3.33.74.31.91.62.0-2.1
Latency to leave start box in cocaine runway, M0.90.91.61.01.30.70.5
Std. dev. time between licks in bursts0.10.10.30.10.10.1-0.6
Total sessions with >9 infusions0.10.10.30.5-0.20.30.1
Short access day 1 total inactive lever presses0.50.61.01.00.70.8-0.5
Short access day 10 total inactive lever presses1.11.31.60.91.31.0-1.2
Short access day 1 total infusions0.50.51.0-0.6-1.0-0.60.5
Short access day 10 total infusions1.31.42.7-1.3-1.6-1.00.4
Short access total infusions0.70.71.7-0.8-1.3-0.70.5
Short access day 1 locomotion4.44.77.0-2.3-2.6-2.11.4
Short access day 10 total locomotion0.10.10.5-0.1-0.00.2-0.7
Short access total locomotion0.20.20.5-0.6-0.7-0.2-0.1
One hour access (0.3 mA shock)2.42.74.8-2.1-2.2-1.30.2
Compulsive drug intake2.82.84.61.21.31.9-2.1
One hour access (shock baseline)6.27.210.0-2.8-3.2-2.81.8
Social response proportion2.83.05.12.31.91.7-0.6
Social responses2.93.84.02.01.92.0-1.9
Social time0.81.11.21.01.11.1-1.0
Soleus weight1.02.93.8-1.8-1.9-1.71.4
Bone: stiffness1.42.33.6-1.9-1.4-1.41.2
Tibialis anterior weight0.82.95.4-1.3-1.2-1.72.3
Time to tail flick, vehicle, before self-admin1.81.93.11.41.81.5-0.5
Time to tail flick, vehicle, after self-admin0.10.10.2-0.0-0.1-0.20.4
Time to tail flick, test, before self-admin0.00.00.1-0.1-0.2-0.0-0.2
Time to tail flick, test, after self-admin0.20.30.70.20.90.40.1
Delta time to tail flick, vehicle, before/after SA0.10.10.20.1-0.20.0-0.5
Delta time to tail flick, test, before/after SA0.70.61.50.71.20.70.1
Tibia length0.41.01.31.00.81.1-1.2
Ambulatory time before self-admin0.80.91.40.81.20.9-0.7
Ambulatory time after self-admin0.40.41.00.20.10.7-1.0
Bone: tissue strength0.20.20.7-0.00.1-0.30.8
Total heroin consumption1.11.22.0-1.2-0.8-1.01.4
Bone: trabecular number0.71.13.6-0.3-0.4-0.71.9
Bone: trabecular spacing0.10.10.40.10.00.2-0.6
Bone: trabecular thickness2.22.66.4-0.8-1.3-1.42.5
Bone: trabecular tissue density1.41.92.31.41.31.5-1.2
Water consumed over 24 hours0.10.10.4-0.30.0-0.20.6
Number of responses in last shaping day6.66.910.4-2.9-3.2-2.71.3