LOC108349043

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 PL gene expression LOC108349043 0.18 0.09 2.2e-07 0.05 0.06 0.06 0.05 3.7e-06 3.2e-07 2.4e-07 8.1e-06
2 NAcc gene expression LOC108349043 0.06 0.04 1.9e-06 0.05 0.05 0.03 0.05 1.6e-06 1.2e-06 7.4e-05 1.5e-06
3 LHb gene expression LOC108349043 0.15 0.12 5.4e-03 0.05 0.04 0.03 0.05 2.1e-02 3.4e-02 5.3e-02 2.9e-02

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
Bone: apparent density0.30.50.80.1-0.90.8
Area under the delay curve0.70.71.3-0.41.1-0.8
BMI with tail1.23.96.3-0.72.5-2.2
BMI without tail0.91.92.7-0.81.6-1.5
Body weight5.221.627.0-3.55.2-5.0
Weight adjusted by age0.60.71.20.30.9-1.1
Bone surface0.00.00.0-0.1-0.0-0.1
Bone volume0.10.10.2-0.50.2-0.2
Breakpoint value in progressive ratio session0.20.20.40.3-0.60.5
Number of licking bursts0.50.50.70.6-0.80.7
Context. condit. distance diff. score0.50.60.80.9-0.60.7
Locomotion velocity, session 10.40.40.60.2-0.80.8
Locomotion distance, session 13.03.84.51.6-2.12.1
Locomotion velocity, session 20.20.20.30.4-0.50.5
Locomotion distance, session 20.81.11.31.0-1.11.1
Locomotion velocity, session 31.21.42.9-1.70.8-0.8
Locomotion distance, session 30.10.10.30.0-0.40.5
Stereotopy head waving bouts, day 32.02.32.4-1.51.5-1.5
Stereotopy head waving duration, day 30.10.10.10.10.3-0.3
Locomotion velocity, session 70.10.10.3-0.5-0.10.1
Locomotion distance, session 70.60.71.00.5-1.01.0
Stereotopy head waving bouts, day 70.80.91.5-1.20.8-0.8
Stereotopy head waving duration, day 71.82.22.9-1.71.3-1.4
Locomotion velocity, session 80.00.00.00.0-0.00.1
Locomotion distance, session 80.91.31.41.1-1.11.2
Degree of sensitization distance0.10.10.30.5-0.10.1
Degree of sensitization stereotypy0.30.30.8-0.90.1-0.2
Conditioned locomotion3.13.74.1-2.01.8-1.9
Cocaine response after cond. corrected0.40.50.60.60.8-0.7
Cocaine response after cond. not corrected0.40.40.70.40.8-0.7
Cocaine response before conditioning0.20.20.6-0.80.1-0.1
Saline control response0.50.70.9-0.80.9-0.8
Bone: connectivity density0.20.40.60.1-0.80.7
Bone: cortical apparent density0.10.20.6-0.70.1-0.1
Bone: cortical area0.20.30.50.40.7-0.4
Bone: cortical porosity0.00.00.10.3-0.00.0
Bone: cortical porosity0.10.10.20.5-0.10.1
Bone: cortical thickness0.20.30.70.8-0.30.5
Bone: cortical thickness0.00.00.0-0.20.1-0.1
Bone: cortical tissue density0.20.30.7-0.80.2-0.2
Condit. Reinf. active minus inactive responses0.60.70.90.5-0.90.9
Condit. Reinf. active-inactive response ratio0.10.10.10.3-0.20.3
Condit. Reinf. active responses0.10.20.2-0.5-0.40.3
Condit. Reinf. inactive responses0.20.30.5-0.7-0.40.3
Incentive salience index mean0.20.20.40.1-0.60.5
Condit. Reinf. lever presses0.00.00.00.2-0.20.2
Condit. Reinf. active minus inactive responses0.50.60.90.3-1.00.9
Condit. Reinf. active-inactive response ratio0.20.20.40.3-0.60.5
Condit. Reinf. active responses0.50.60.90.4-0.91.0
Condit. Reinf. inactive responses0.10.10.3-0.60.3-0.1
Condit. Reinf. lever presses3.54.75.91.9-2.22.4
Condit. Reinf. lever reinforcers received1.11.62.10.9-1.31.5
Conditioned reinforcement - actives0.50.50.6-0.70.7-0.8
Conditioned reinforcement - inactives0.10.10.1-0.1-0.30.3
Conditioned locomotion0.40.50.7-0.40.8-0.8
Patch foraging indifference point 0 sec0.20.30.4-0.40.7-0.6
Patch foraging indifference point AUC0.00.00.00.0-0.10.2
Delay disc. indifference point, 0s delay0.50.51.51.20.3-0.1
Delay disc. indifference point, 16s delay0.30.30.6-0.80.6-0.3
Delay disc. indifference point, 2s delay0.40.40.90.9-0.30.5
Delay disc. indifference point, 24s delay2.12.03.0-1.01.7-1.4
Delay disc. indifference point, 4s delay1.01.01.5-0.61.2-1.1
Delay disc. indifference point, 8s delay1.81.92.4-1.31.5-1.3
Indifference point function ln k0.20.30.50.7-0.40.4
Indifference point function log k0.20.30.50.7-0.40.4
Patch foraging total patch changes 0 sec0.10.20.4-0.30.6-0.5
Patch foraging total patch changes 12 sec0.00.10.10.4-0.10.2
Patch foraging total patch changes 18 sec0.60.80.9-0.91.0-0.7
Patch foraging total patch changes 24 sec0.60.81.21.1-0.70.8
Patch foraging total patch changes 6 sec0.00.00.1-0.00.2-0.1
Patch foraging time to switch 0 sec0.81.31.7-0.81.3-1.2
Patch foraging water rate 0 sec0.50.81.51.2-0.70.7
Patch foraging water rate 12 sec0.10.10.20.3-0.40.4
Patch foraging water rate 18 sec0.30.40.60.1-0.80.7
Patch foraging water rate 24 sec0.40.50.60.8-0.60.8
Patch foraging water rate 6 sec0.30.40.50.7-0.40.6
Seeking ratio, delayed vs. immediate footshock0.40.51.5-1.20.2-0.0
Distance traveled before self-admin0.70.70.8-0.70.9-0.9
Distance traveled after self-admin0.10.10.2-0.50.2-0.4
Extensor digitorum longus weight0.20.60.80.6-0.90.9
Bone: elastic displacement0.00.00.00.0-0.20.2
Bone: elastic work0.00.00.10.30.1-0.0
Bone: endosteal estimation2.86.17.6-1.92.8-2.7
Bone: endosteal perimeter1.32.73.8-0.91.9-1.9
Epididymis fat weight1.02.43.4-0.91.8-1.7
Delta time in closed arm before/after self-admin1.01.01.7-0.21.1-1.3
Delta time in open arm before/after self-admin0.60.60.90.5-0.81.0
Diff in mean of infusions in LGA sessions1.01.11.11.1-1.11.1
Delay discount exponential model param0.60.61.10.5-1.00.7
Extinction: sum of active levers before priming0.30.30.50.7-0.60.4
Active lever presses in extinction session 60.00.00.00.10.20.1
Bone: final force3.65.87.3-1.82.7-2.6
Bone: final moment2.84.56.3-1.52.5-2.3
Food consumed during 24 hour testing period0.20.30.5-0.10.7-0.6
Glucose0.30.51.41.20.00.1
Heart weight2.63.74.42.1-1.91.7
Delay discount hyperbolic model param0.30.40.70.3-0.80.5
Intermittent access intake day 1-15 change2.62.65.5-2.41.0-1.1
Intermittent access intake escalation3.53.46.8-2.61.2-1.4
Intermittent access intake escalation 20.70.72.2-1.5-0.1-0.2
Intermitt. access day 1 inactive lever presses0.50.51.21.1-0.40.3
Intermitt. access day 15 inactive lever presses2.52.84.8-2.21.2-1.4
Intermitt. access escalation Index0.40.40.40.6-0.60.6
Intermittent access day 1 total infusions0.20.20.30.3-0.50.6
Intermittent access day 15 total infusions0.40.51.2-1.10.4-0.4
Intermittent access terminal intake (last 3 days)0.40.40.6-0.80.5-0.6
Intermittent access total infusions0.00.00.1-0.3-0.20.1
Intermittent access day 1 locomotion0.10.10.2-0.30.4-0.4
Intermittent access day 15 total locomotion7.37.811.6-3.42.4-2.5
Intermittent access total locomotion3.03.45.4-2.31.5-1.6
Intermittent access standard deviation0.80.91.1-0.90.9-1.0
Left kidney weight2.98.19.4-2.52.9-3.1
Right kidney weight3.911.012.0-3.13.4-3.5
Cocaine induced anxiety0.10.20.4-0.7-0.20.1
Post-drug Anxiety0.20.20.3-0.1-0.60.4
Baseline Anxiety0.90.92.11.4-0.60.6
Tail length1.44.14.5-2.11.9-2.1
Length with tail2.79.810.2-3.23.0-3.2
Length without tail1.73.74.1-1.82.0-2.0
Times rat made contact with spout2.02.33.20.8-1.81.7
Lifetime Intake0.10.10.1-0.30.2-0.3
Liver weight, left6.410.312.4-3.53.0-3.0
Liver weight, right2.84.64.6-2.22.1-2.2
Locomotor activity0.10.10.2-0.30.4-0.2
Locomotor testing distance0.10.10.40.6-0.00.2
Locomotor testing rearing0.81.21.6-0.81.3-1.1
Locomotion in novel chamber1.41.73.61.9-0.81.0
Locomotion in novel chamber post-restriction2.02.42.5-1.41.6-1.6
Fecal boli incidents, locomotor time 10.00.00.0-0.10.1-0.1
Change in fecal boli incidents, locomotor task1.11.03.01.70.1-0.1
Time >=10cm from walls, locomotor time 10.90.91.3-0.41.1-1.1
Bouts of movement, locomotor time 10.10.10.20.1-0.40.4
Total resting periods, locomotor time 10.00.00.1-0.3-0.10.1
Rest time, locomotor task time 10.10.10.10.20.3-0.3
Distance moved, locomotor task time 10.30.30.5-0.70.4-0.4
Vertical activity count, locomotor time 10.80.81.0-1.00.8-0.9
Time >=10cm from walls, locomotor time 23.43.65.6-0.42.4-2.2
Bouts of movement, locomotor time 20.60.61.6-1.30.4-0.4
Total resting periods, locomotor time 20.10.10.3-0.5-0.10.1
Rest time, locomotor task time 20.00.10.20.4-0.0-0.0
Distance moved, locomotor task time 22.42.83.3-1.81.6-1.6
Vertical activity count, locomotor time 21.61.72.2-1.51.1-1.3
Light reinforcement 12.03.74.4-1.71.9-2.1
Light reinforcement 22.63.53.9-1.71.9-2.0
Bone: marrow area2.96.37.8-2.02.8-2.7
Bone: maximum diameter0.20.40.80.20.9-0.7
Bone: maximum force1.32.33.0-1.11.7-1.6
Bone: maximum moment0.91.52.2-0.71.5-1.3
Mean time between licks in bursts0.40.60.80.5-0.90.8
Mean num. licks in bursts0.10.10.2-0.0-0.40.5
Cd content in liver1.51.72.2-1.51.2-1.2
Co content in liver2.02.42.9-1.31.6-1.7
Cu content in liver3.23.94.41.8-2.12.0
Fe content in liver5.06.06.8-2.62.3-2.4
K content in liver1.21.21.41.1-1.21.0
Mg content in liver3.43.44.52.1-1.71.7
Mn content in liver0.10.20.30.6-0.30.3
Na content in liver0.10.10.3-0.6-0.3-0.0
Rb content in liver0.10.10.10.10.4-0.3
Se content in liver2.83.53.81.8-2.01.8
Sr content in liver0.00.00.10.3-0.20.2
Zn content in liver0.91.02.01.40.8-0.5
Bone: minimum diameter0.71.42.30.01.5-1.3
Time in familiar zone, hab. session 10.00.00.0-0.1-0.00.1
Time in novel zone, hab. session 10.20.20.3-0.20.5-0.6
Total zone transitions, hab. session 12.02.83.91.1-2.01.8
Total locomotion distance, hab. session 11.52.22.81.1-1.71.6
Locomotion velocity, hab. session 11.52.12.71.1-1.61.6
Time in familiar zone, hab. session 21.31.41.61.1-1.11.3
Time in novel zone, hab. session 21.91.92.3-1.51.3-1.3
Total zone transitions, hab. session 20.40.50.50.6-0.70.7
Total locomotion distance, hab. session 22.33.03.31.6-1.81.8
Locomotion velocity, hab. session 22.73.74.11.7-2.02.0
Novel to familiar place preference ratio0.20.20.30.00.5-0.5
Novelty place preference0.10.10.2-0.00.5-0.5
Time in novel zone, NPP test0.20.20.3-0.20.6-0.6
Total zone transitions, NPP test1.82.52.71.6-1.51.6
Total locomotion distance, NPP test1.62.22.51.6-1.41.5
Locomotion velocity, NPP test2.43.43.92.0-1.81.8
Intraocular pressure1.31.82.1-1.31.4-1.3
Delta distance traveled before/after self-admin0.40.50.60.5-0.80.7
Delta ambulatory time before/after self-admin0.40.50.80.3-0.90.7
Parametrial fat weight3.16.08.7-2.92.1-2.2
Pavlov. Cond. lever latency0.40.50.6-0.80.7-0.6
Pavlov. Cond. magazine entry latency0.71.01.51.2-0.70.9
Pavlov. Cond. change in total contacts0.60.60.7-0.80.8-0.7
Pavlov. Cond. index score0.40.51.11.0-0.40.6
Pavlov. Cond. latency score0.40.51.21.1-0.30.5
Pavlov. Cond. lever contacts0.30.40.50.7-0.60.6
Pavlov. Cond. magazine entry number1.31.62.2-1.51.0-1.2
Pavlov. Cond. intertrial magazine entries0.20.20.7-0.8-0.1-0.1
Pavlov. Cond. lever-magazine prob. diff.0.30.40.90.9-0.40.5
Pavlov. Cond. response bias1.01.21.31.1-1.11.2
Pavlov. Cond. lever latency1.82.43.4-1.21.5-1.8
Pavlov. Cond. magazine entry latency0.30.30.6-0.80.5-0.4
Pavlov. Cond. change in total contacts1.01.42.10.8-1.31.4
Pavlov. Cond. index score0.30.40.70.1-0.70.8
Pavlov. Cond. latency score0.20.20.40.0-0.50.6
Pavlov. Cond. lever contacts1.01.42.30.6-1.21.5
Pavlov. Cond. magazine entry number0.10.10.30.5-0.30.1
Pavlov. Cond. intertrial magazine entries0.40.50.80.4-0.90.7
Pavlov. Cond. lever-magazine prob. diff.0.20.20.4-0.0-0.40.6
Pavlov. Cond. response bias0.50.71.30.2-0.91.1
Time in closed arm before self-admin0.91.01.81.3-0.80.7
Time in closed arm after self-admin0.20.20.60.80.1-0.2
Time in open arm before self-admin0.30.40.9-0.9-0.40.3
Time in open arm after self-admin1.01.11.8-0.1-1.31.3
Bone: periosteal estimation1.63.34.7-1.12.2-2.0
Bone: periosteal perimeter0.50.81.5-0.11.2-1.0
Bone: post-yield work0.20.30.3-0.50.5-0.6
Progressive ratio test 1 active lever presses0.10.10.20.4-0.10.2
Progressive ratio test 1 breakpoint0.20.20.50.7-0.20.2
Progressive ratio test 1 inactive lever presses0.91.01.0-1.01.0-1.0
Progressive ratio test 2 active lever presses0.10.10.2-0.50.0-0.0
Progressive ratio test 2 breakpoint0.10.10.2-0.5-0.10.1
Progressive ratio test 2 inactive lever presses0.30.40.8-0.9-0.50.2
Incentive Sensitization - Responses0.50.50.8-0.0-0.90.9
Incentive Sensitization - Breakpoint0.30.30.4-0.4-0.60.6
Sum of active levers in priming session hrs 5-60.30.30.60.6-0.70.4
Progressive ratio5.15.99.2-3.02.1-2.1
Food seeking constrained by brief footshock0.10.10.20.4-0.20.4
Seeking ratio, punishment vs. effort4.15.18.83.0-1.81.8
Retroperitoneal fat weight1.03.24.2-1.12.1-2.0
Reaction time number correct1.01.52.3-1.51.1-1.0
Reaction time mean minus median1.31.74.2-2.10.5-0.7
Reaction time mean minus median AUC0.91.12.7-1.70.6-0.6
Reaction time num false alarms0.10.10.20.1-0.40.3
Reaction time num false alarms AUC0.60.81.00.8-1.00.8
Reaction time trials correct on left1.01.52.3-1.51.1-1.0
Reaction time trials on left1.01.52.3-1.51.0-1.0
Reaction time mean0.30.50.7-0.90.6-0.5
Reaction time mean AUC0.81.11.8-1.30.9-0.9
Median of all reaction times0.20.30.4-0.40.6-0.5
Reaction time omissions0.40.61.6-1.30.2-0.3
Reaction time false alarm rate1.62.32.71.6-1.51.3
Reaction time premature initiation rate0.20.30.40.6-0.60.4
Reaction time premature initiations0.10.10.1-0.40.1-0.3
Std. dev. reaction times0.30.51.2-1.10.2-0.3
Reaction time trials completed1.01.52.3-1.51.0-1.0
Reaction time trials AUC1.01.52.4-1.51.0-1.0
Run reversals in cocaine runway, females0.40.40.7-0.90.6-0.4
Run reversals in cocaine runway, males3.43.39.1-3.00.5-0.7
Latency to leave start box in cocaine runway2.12.25.02.2-0.90.9
Latency to leave start box in cocaine runway, F2.02.24.92.2-0.90.9
Latency to leave start box in cocaine runway, M0.20.20.40.6-0.20.0
Std. dev. time between licks in bursts0.70.82.21.50.4-0.2
Total sessions with >9 infusions0.10.10.20.50.1-0.0
Short access day 1 total inactive lever presses0.00.00.1-0.2-0.30.1
Short access day 10 total inactive lever presses0.00.00.1-0.30.1-0.1
Short access day 1 total infusions1.21.31.71.3-1.01.0
Short access day 10 total infusions0.00.00.00.0-0.10.0
Short access total infusions0.00.00.10.3-0.0-0.0
Short access day 1 locomotion0.80.82.11.5-0.30.4
Short access day 10 total locomotion2.02.25.12.3-0.90.8
Short access total locomotion0.50.51.41.2-0.10.0
One hour access (0.3 mA shock)0.50.61.00.3-1.00.9
Compulsive drug intake4.44.46.82.6-1.91.7
One hour access (shock baseline)1.31.53.5-1.90.7-0.6
Social response proportion0.30.41.11.10.00.0
Social responses0.60.71.91.4-0.30.4
Social time0.10.10.20.2-0.40.4
Soleus weight0.20.50.70.30.8-0.8
Bone: stiffness1.11.72.3-1.01.5-1.3
Tibialis anterior weight1.03.33.51.9-1.81.8
Time to tail flick, vehicle, before self-admin4.04.16.9-2.61.7-1.6
Time to tail flick, vehicle, after self-admin0.40.51.01.0-0.40.4
Time to tail flick, test, before self-admin0.10.10.20.0-0.20.4
Time to tail flick, test, after self-admin0.91.02.8-1.70.2-0.2
Delta time to tail flick, vehicle, before/after SA2.62.64.62.1-1.21.3
Delta time to tail flick, test, before/after SA2.62.33.5-1.91.3-1.3
Tibia length3.18.69.4-3.12.8-3.0
Ambulatory time before self-admin0.30.30.4-0.50.6-0.6
Ambulatory time after self-admin0.10.10.2-0.4-0.40.1
Bone: tissue strength0.00.00.00.0-0.00.0
Total heroin consumption0.30.40.6-0.4-0.80.6
Bone: trabecular number0.71.01.50.5-1.21.2
Bone: trabecular spacing1.41.92.4-0.91.5-1.5
Bone: trabecular thickness0.70.91.6-1.30.7-0.7
Bone: trabecular tissue density0.20.30.8-0.90.2-0.3
Water consumed over 24 hours1.72.12.61.6-1.31.3
Number of responses in last shaping day3.53.68.32.9-1.21.0