LOC108349035

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Adipose gene expression LOC108349035 0.25 0.11 2.3e-12 0.1 0.11 0.09 0.1 2.2e-11 1.6e-12 1.3e-10 6.0e-11
2 Adipose alternative polyA XR_010060762.1 0.12 0.06 5.5e-07 0.03 0.04 0.04 0.04 5.4e-04 2.6e-05 6.0e-05 4.7e-05
3 pVTA gene expression LOC108349035 0.15 0.08 3.6e-08 0.12 0.07 0.08 0.09 1.0e-09 4.0e-06 5.9e-07 5.0e-08

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
Bone: apparent density1.01.92.9-1.61.7-0.4
Area under the delay curve0.10.10.20.4-0.40.3
BMI with tail1.34.611.0-1.50.83.3
BMI without tail0.42.25.8-0.80.32.4
Body weight1.14.711.60.7-1.53.4
Weight adjusted by age0.41.31.61.3-1.30.8
Bone surface0.10.20.30.5-0.6-0.3
Bone volume0.10.20.3-0.50.50.1
Breakpoint value in progressive ratio session0.10.10.20.2-0.3-0.5
Number of licking bursts0.82.42.91.7-1.7-1.2
Context. condit. distance diff. score3.44.16.21.9-1.6-2.5
Locomotion velocity, session 11.51.74.20.8-0.5-2.0
Locomotion distance, session 10.60.71.0-0.91.0-0.6
Locomotion velocity, session 20.40.40.70.5-0.5-0.8
Locomotion distance, session 20.00.10.1-0.10.2-0.3
Locomotion velocity, session 30.50.50.8-0.90.90.1
Locomotion distance, session 30.60.70.9-0.70.9-0.9
Stereotopy head waving bouts, day 31.51.72.81.5-1.7-0.1
Stereotopy head waving duration, day 30.81.01.51.2-1.2-0.3
Locomotion velocity, session 70.50.60.8-0.50.8-0.9
Locomotion distance, session 71.31.62.8-0.81.2-1.7
Stereotopy head waving bouts, day 70.30.30.90.2-0.1-0.9
Stereotopy head waving duration, day 70.00.10.10.2-0.2-0.3
Locomotion velocity, session 85.46.58.32.9-2.7-2.0
Locomotion distance, session 81.72.43.61.5-1.2-1.9
Degree of sensitization distance0.91.01.41.2-1.1-0.6
Degree of sensitization stereotypy0.50.61.5-0.20.4-1.2
Conditioned locomotion0.80.91.20.8-1.10.9
Cocaine response after cond. corrected0.20.40.70.3-0.50.9
Cocaine response after cond. not corrected1.01.42.21.3-1.50.5
Cocaine response before conditioning1.21.52.41.4-1.5-0.2
Saline control response2.43.44.1-1.81.62.0
Bone: connectivity density0.30.50.7-0.80.9-0.3
Bone: cortical apparent density1.82.84.3-1.61.32.1
Bone: cortical area0.10.20.30.4-0.50.2
Bone: cortical porosity1.11.23.50.30.1-1.9
Bone: cortical porosity1.82.04.80.9-0.5-2.2
Bone: cortical thickness1.42.33.1-1.81.51.2
Bone: cortical thickness2.83.54.1-2.01.71.9
Bone: cortical tissue density1.52.54.0-1.51.12.0
Condit. Reinf. active minus inactive responses0.60.71.8-0.20.5-1.4
Condit. Reinf. active-inactive response ratio0.30.30.5-0.70.7-0.0
Condit. Reinf. active responses0.40.60.7-0.60.8-0.8
Condit. Reinf. inactive responses1.11.42.3-1.41.5-0.1
Incentive salience index mean1.01.32.90.8-0.5-1.7
Condit. Reinf. lever presses1.52.32.51.6-1.4-1.6
Condit. Reinf. active minus inactive responses0.10.20.30.6-0.6-0.1
Condit. Reinf. active-inactive response ratio0.81.21.81.3-1.3-0.4
Condit. Reinf. active responses0.00.00.0-0.00.1-0.2
Condit. Reinf. inactive responses0.50.81.1-1.11.00.6
Condit. Reinf. lever presses0.50.71.5-0.30.6-1.2
Condit. Reinf. lever reinforcers received0.10.10.20.1-0.0-0.5
Conditioned reinforcement - actives0.10.30.4-0.60.70.4
Conditioned reinforcement - inactives0.00.10.2-0.40.5-0.0
Conditioned locomotion0.00.00.10.20.0-0.3
Patch foraging indifference point 0 sec0.82.34.0-1.31.12.0
Patch foraging indifference point AUC0.10.20.40.4-0.4-0.6
Delay disc. indifference point, 0s delay0.60.71.01.0-1.00.1
Delay disc. indifference point, 16s delay0.40.50.7-0.80.80.5
Delay disc. indifference point, 2s delay1.31.42.21.5-1.4-0.4
Delay disc. indifference point, 24s delay0.00.00.00.10.10.2
Delay disc. indifference point, 4s delay0.60.60.80.6-0.80.9
Delay disc. indifference point, 8s delay0.00.00.10.2-0.10.0
Indifference point function ln k0.30.80.90.9-0.8-1.0
Indifference point function log k0.30.80.90.9-0.8-1.0
Patch foraging total patch changes 0 sec0.82.53.9-1.41.22.0
Patch foraging total patch changes 12 sec1.01.42.3-1.10.91.5
Patch foraging total patch changes 18 sec2.25.25.8-2.42.12.3
Patch foraging total patch changes 24 sec1.13.95.3-2.32.31.1
Patch foraging total patch changes 6 sec1.42.42.8-1.61.41.7
Patch foraging time to switch 0 sec0.62.24.7-1.10.82.2
Patch foraging water rate 0 sec0.00.10.10.3-0.40.2
Patch foraging water rate 12 sec0.20.81.3-1.11.10.1
Patch foraging water rate 18 sec0.20.51.0-0.50.31.0
Patch foraging water rate 24 sec0.40.50.6-0.80.60.7
Patch foraging water rate 6 sec0.30.40.6-0.70.50.7
Seeking ratio, delayed vs. immediate footshock0.30.41.2-0.4-0.01.1
Distance traveled before self-admin0.20.50.60.5-0.80.8
Distance traveled after self-admin0.40.60.80.5-0.90.9
Extensor digitorum longus weight0.31.11.71.3-1.30.1
Bone: elastic displacement0.60.71.2-1.01.1-0.2
Bone: elastic work0.00.00.1-0.20.20.3
Bone: endosteal estimation3.58.713.43.6-3.7-0.0
Bone: endosteal perimeter3.07.310.73.3-3.3-0.8
Epididymis fat weight5.729.034.5-5.54.75.9
Delta time in closed arm before/after self-admin0.30.30.50.5-0.70.4
Delta time in open arm before/after self-admin0.30.40.6-0.70.80.2
Diff in mean of infusions in LGA sessions0.10.10.4-0.10.1-0.6
Delay discount exponential model param0.10.10.2-0.40.4-0.2
Extinction: sum of active levers before priming0.60.91.11.0-1.0-0.8
Active lever presses in extinction session 60.40.40.7-0.70.8-0.1
Bone: final force1.32.26.1-0.60.12.5
Bone: final moment1.01.54.3-0.50.22.1
Food consumed during 24 hour testing period0.61.31.81.1-1.30.9
Glucose6.910.914.03.7-3.3-2.7
Heart weight0.40.71.11.0-1.00.2
Delay discount hyperbolic model param0.10.20.3-0.50.5-0.2
Intermittent access intake day 1-15 change0.00.00.0-0.00.00.0
Intermittent access intake escalation0.10.50.8-0.90.80.3
Intermittent access intake escalation 20.10.10.40.2-0.2-0.6
Intermitt. access day 1 inactive lever presses0.22.54.11.8-2.0-0.3
Intermitt. access day 15 inactive lever presses0.00.20.20.4-0.50.3
Intermitt. access escalation Index0.10.40.60.4-0.6-0.8
Intermittent access day 1 total infusions0.30.81.4-0.40.9-1.2
Intermittent access day 15 total infusions0.40.91.6-1.01.3-0.3
Intermittent access terminal intake (last 3 days)0.30.51.0-0.71.0-0.4
Intermittent access total infusions0.60.71.2-0.71.1-0.6
Intermittent access day 1 locomotion0.20.40.8-0.70.90.1
Intermittent access day 15 total locomotion0.10.30.9-0.20.10.9
Intermittent access total locomotion0.50.60.8-0.70.90.6
Intermittent access standard deviation0.21.32.9-0.80.61.7
Left kidney weight0.54.011.6-0.4-0.33.4
Right kidney weight0.64.212.3-0.2-0.53.5
Cocaine induced anxiety0.10.40.80.6-0.9-0.0
Post-drug Anxiety0.30.40.50.4-0.70.7
Baseline Anxiety0.10.10.40.00.00.6
Tail length1.16.19.33.0-3.0-0.3
Length with tail1.87.912.43.3-3.50.8
Length without tail1.16.07.12.1-2.72.6
Times rat made contact with spout2.42.74.3-1.92.1-0.1
Lifetime Intake0.40.50.9-0.60.9-0.4
Liver weight, left2.54.37.02.4-2.60.4
Liver weight, right3.35.89.02.9-3.0-0.2
Locomotor activity0.60.91.61.1-1.3-0.1
Locomotor testing distance0.30.81.41.0-1.20.1
Locomotor testing rearing0.31.11.61.0-1.30.7
Locomotion in novel chamber0.10.10.2-0.30.20.5
Locomotion in novel chamber post-restriction0.20.72.0-0.30.21.4
Fecal boli incidents, locomotor time 10.00.10.2-0.30.4-0.3
Change in fecal boli incidents, locomotor task2.02.13.41.7-1.90.2
Time >=10cm from walls, locomotor time 12.32.93.91.4-2.01.6
Bouts of movement, locomotor time 10.00.10.1-0.10.1-0.4
Total resting periods, locomotor time 10.10.10.40.1-0.1-0.6
Rest time, locomotor task time 10.40.61.00.7-0.6-1.0
Distance moved, locomotor task time 10.20.41.2-0.20.11.1
Vertical activity count, locomotor time 10.21.53.9-0.60.42.0
Time >=10cm from walls, locomotor time 20.82.22.81.7-1.61.0
Bouts of movement, locomotor time 20.00.10.10.3-0.3-0.2
Total resting periods, locomotor time 20.10.50.60.7-0.6-0.8
Rest time, locomotor task time 21.11.92.91.5-1.7-0.8
Distance moved, locomotor task time 21.01.32.2-0.91.01.5
Vertical activity count, locomotor time 20.30.82.0-0.40.51.4
Light reinforcement 10.31.23.6-0.2-0.21.9
Light reinforcement 20.40.91.80.5-0.81.3
Bone: marrow area3.48.513.13.5-3.60.2
Bone: maximum diameter2.14.35.82.4-2.3-1.3
Bone: maximum force0.51.02.8-0.1-0.11.7
Bone: maximum moment0.30.51.60.0-0.21.3
Mean time between licks in bursts0.84.85.52.3-2.1-2.1
Mean num. licks in bursts1.84.76.5-2.52.61.1
Cd content in liver0.70.80.9-0.80.91.0
Co content in liver1.11.32.8-0.80.61.7
Cu content in liver2.42.94.3-2.12.10.2
Fe content in liver1.11.31.9-1.11.01.4
K content in liver0.20.20.5-0.10.1-0.7
Mg content in liver2.02.22.41.5-1.5-1.5
Mn content in liver3.94.46.22.5-2.5-0.9
Na content in liver0.40.40.7-0.80.80.1
Rb content in liver0.00.00.00.1-0.10.1
Se content in liver3.94.65.12.3-2.0-2.1
Sr content in liver0.40.30.60.8-0.60.0
Zn content in liver0.30.40.50.7-0.7-0.4
Bone: minimum diameter2.44.77.12.6-2.7-0.5
Time in familiar zone, hab. session 13.84.16.8-2.32.6-0.3
Time in novel zone, hab. session 12.52.84.71.9-2.20.2
Total zone transitions, hab. session 10.10.10.40.1-0.0-0.7
Total locomotion distance, hab. session 10.00.10.2-0.10.1-0.4
Locomotion velocity, hab. session 10.00.10.20.00.0-0.4
Time in familiar zone, hab. session 21.01.21.8-1.31.10.7
Time in novel zone, hab. session 20.20.20.30.6-0.4-0.3
Total zone transitions, hab. session 20.10.20.4-0.20.00.7
Total locomotion distance, hab. session 20.10.10.1-0.40.20.3
Locomotion velocity, hab. session 20.00.00.0-0.10.0-0.1
Novel to familiar place preference ratio0.10.10.30.00.2-0.5
Novelty place preference0.10.10.40.2-0.0-0.6
Time in novel zone, NPP test0.10.20.40.3-0.1-0.6
Total zone transitions, NPP test0.20.20.7-0.10.2-0.8
Total locomotion distance, NPP test0.10.20.2-0.40.5-0.2
Locomotion velocity, NPP test0.10.20.3-0.50.6-0.3
Intraocular pressure0.81.32.0-1.21.40.7
Delta distance traveled before/after self-admin0.00.00.00.2-0.20.1
Delta ambulatory time before/after self-admin0.10.20.30.5-0.5-0.1
Parametrial fat weight1.84.18.9-1.61.03.0
Pavlov. Cond. lever latency4.86.111.5-2.11.63.4
Pavlov. Cond. magazine entry latency2.63.36.71.4-1.0-2.6
Pavlov. Cond. change in total contacts1.71.93.31.2-1.0-1.8
Pavlov. Cond. index score4.25.39.42.0-1.6-3.1
Pavlov. Cond. latency score4.55.89.92.1-1.7-3.1
Pavlov. Cond. lever contacts4.25.17.42.2-1.8-2.7
Pavlov. Cond. magazine entry number1.82.34.9-1.20.82.2
Pavlov. Cond. intertrial magazine entries2.53.03.5-1.91.81.4
Pavlov. Cond. lever-magazine prob. diff.4.05.09.11.9-1.4-3.0
Pavlov. Cond. response bias2.93.66.31.7-1.3-2.5
Pavlov. Cond. lever latency0.81.11.81.1-1.30.4
Pavlov. Cond. magazine entry latency0.30.50.90.6-0.4-0.9
Pavlov. Cond. change in total contacts0.20.40.5-0.50.7-0.7
Pavlov. Cond. index score0.20.30.7-0.20.4-0.8
Pavlov. Cond. latency score0.10.20.4-0.20.4-0.6
Pavlov. Cond. lever contacts0.60.81.4-1.01.2-0.2
Pavlov. Cond. magazine entry number0.00.00.1-0.10.00.3
Pavlov. Cond. intertrial magazine entries0.40.91.20.9-0.9-1.1
Pavlov. Cond. lever-magazine prob. diff.0.10.20.5-0.20.4-0.7
Pavlov. Cond. response bias0.30.40.6-0.40.6-0.8
Time in closed arm before self-admin0.10.20.40.6-0.6-0.2
Time in closed arm after self-admin0.10.10.10.2-0.30.1
Time in open arm before self-admin0.50.61.80.30.0-1.3
Time in open arm after self-admin0.20.20.6-0.10.3-0.7
Bone: periosteal estimation1.74.06.42.4-2.50.3
Bone: periosteal perimeter1.42.94.22.0-2.1-0.5
Bone: post-yield work1.52.63.92.0-2.0-0.5
Progressive ratio test 1 active lever presses0.00.00.00.10.2-0.2
Progressive ratio test 1 breakpoint0.00.00.00.10.1-0.2
Progressive ratio test 1 inactive lever presses0.30.80.9-0.90.80.9
Progressive ratio test 2 active lever presses0.30.40.6-0.60.8-0.3
Progressive ratio test 2 breakpoint0.40.50.8-0.80.9-0.4
Progressive ratio test 2 inactive lever presses0.20.71.30.7-0.5-1.1
Incentive Sensitization - Responses0.10.20.5-0.30.3-0.7
Incentive Sensitization - Breakpoint0.10.30.4-0.50.5-0.6
Sum of active levers in priming session hrs 5-60.50.50.90.6-0.4-0.9
Progressive ratio1.13.28.7-0.90.32.9
Food seeking constrained by brief footshock0.30.30.5-0.70.70.2
Seeking ratio, punishment vs. effort1.12.46.60.8-0.3-2.6
Retroperitoneal fat weight0.20.91.8-0.80.51.3
Reaction time number correct0.51.82.0-1.41.21.3
Reaction time mean minus median0.42.65.21.3-1.0-2.3
Reaction time mean minus median AUC0.42.86.31.3-0.8-2.5
Reaction time num false alarms0.50.81.21.0-1.1-0.4
Reaction time num false alarms AUC0.51.01.61.2-1.3-0.4
Reaction time trials correct on left0.51.82.0-1.41.21.3
Reaction time trials on left0.51.61.8-1.41.21.3
Reaction time mean1.53.33.61.9-1.6-1.9
Reaction time mean AUC1.22.83.21.8-1.5-1.8
Median of all reaction times1.42.22.81.7-1.5-1.3
Reaction time omissions1.01.62.11.4-1.2-1.1
Reaction time false alarm rate2.23.03.71.9-1.9-1.3
Reaction time premature initiation rate0.00.10.10.2-0.20.2
Reaction time premature initiations0.20.61.4-0.50.51.2
Std. dev. reaction times1.44.56.52.0-1.7-2.6
Reaction time trials completed0.51.61.8-1.41.21.3
Reaction time trials AUC0.51.61.8-1.41.21.3
Run reversals in cocaine runway, females0.80.91.1-1.01.00.8
Run reversals in cocaine runway, males0.60.70.90.9-0.7-0.9
Latency to leave start box in cocaine runway0.91.21.31.1-1.1-1.0
Latency to leave start box in cocaine runway, F0.50.60.70.8-0.7-0.9
Latency to leave start box in cocaine runway, M0.40.40.70.7-0.8-0.1
Std. dev. time between licks in bursts3.66.88.93.0-2.9-1.8
Total sessions with >9 infusions0.10.20.4-0.30.6-0.2
Short access day 1 total inactive lever presses0.51.11.31.1-0.8-1.1
Short access day 10 total inactive lever presses0.00.20.40.3-0.60.2
Short access day 1 total infusions0.20.41.00.30.1-1.0
Short access day 10 total infusions0.30.50.9-0.71.0-0.1
Short access total infusions0.20.20.4-0.20.6-0.6
Short access day 1 locomotion0.10.10.30.3-0.1-0.5
Short access day 10 total locomotion0.62.53.61.8-1.90.9
Short access total locomotion0.50.71.21.1-1.00.2
One hour access (0.3 mA shock)0.20.30.5-0.40.4-0.7
Compulsive drug intake1.52.23.81.6-2.0-0.5
One hour access (shock baseline)0.71.83.3-1.51.8-0.2
Social response proportion0.91.21.91.2-1.40.5
Social responses0.50.71.20.8-1.10.5
Social time2.23.45.42.1-2.3-0.7
Soleus weight4.312.618.74.3-4.3-1.0
Bone: stiffness0.71.23.0-0.70.41.7
Tibialis anterior weight0.62.02.8-1.41.11.7
Time to tail flick, vehicle, before self-admin0.30.30.6-0.60.10.8
Time to tail flick, vehicle, after self-admin0.20.40.50.7-0.5-0.7
Time to tail flick, test, before self-admin0.40.40.7-0.80.70.2
Time to tail flick, test, after self-admin0.90.91.6-0.70.8-1.3
Delta time to tail flick, vehicle, before/after SA0.60.61.3-0.20.7-1.1
Delta time to tail flick, test, before/after SA0.10.20.2-0.40.5-0.2
Tibia length2.05.69.12.7-3.00.7
Ambulatory time before self-admin0.00.00.10.1-0.20.3
Ambulatory time after self-admin0.20.40.70.5-0.80.4
Bone: tissue strength0.10.10.20.00.00.5
Total heroin consumption0.10.10.20.2-0.4-0.2
Bone: trabecular number1.52.84.4-2.02.1-0.4
Bone: trabecular spacing1.52.23.41.7-1.80.6
Bone: trabecular thickness1.11.62.5-1.51.60.2
Bone: trabecular tissue density0.20.30.80.4-0.1-0.9
Water consumed over 24 hours0.30.50.80.8-0.9-0.3
Number of responses in last shaping day2.63.44.82.2-2.0-1.2