LOC108349035

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Adipose gene expression LOC108349035 0.25 0.11 2.3e-12 0.1 0.11 0.09 0.1 2.2e-11 1.6e-12 1.3e-10 5.8e-11
2 Adipose alternative polyA XR_010060762.1 0.12 0.06 5.5e-07 0.03 0.04 0.04 0.04 5.4e-04 2.6e-05 6.0e-05 4.4e-05
3 pVTA gene expression LOC108349035 0.15 0.08 3.6e-08 0.12 0.07 0.08 0.09 1.0e-09 4.0e-06 5.9e-07 5.3e-08

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
Bone: apparent density1.11.92.9-1.61.70.4
Area under the delay curve0.10.10.20.4-0.4-0.3
BMI with tail1.34.611.0-1.50.8-3.3
BMI without tail0.72.25.8-0.80.3-2.4
Body weight1.14.711.60.7-1.5-3.4
Weight adjusted by age0.91.31.61.3-1.3-0.8
Bone surface0.10.20.30.5-0.60.3
Bone volume0.10.20.3-0.50.5-0.1
Breakpoint value in progressive ratio session0.10.10.20.2-0.30.5
Number of licking bursts1.52.42.91.7-1.71.2
Context. condit. distance diff. score3.44.16.21.9-1.62.5
Locomotion velocity, session 11.61.74.20.8-0.52.0
Locomotion distance, session 10.60.71.0-0.91.00.6
Locomotion velocity, session 20.40.40.70.5-0.50.8
Locomotion distance, session 20.00.10.1-0.10.20.3
Locomotion velocity, session 30.50.50.8-0.90.9-0.1
Locomotion distance, session 30.60.70.9-0.70.90.9
Stereotopy head waving bouts, day 31.51.72.81.5-1.70.1
Stereotopy head waving duration, day 30.81.01.51.2-1.20.3
Locomotion velocity, session 70.50.60.8-0.50.80.9
Locomotion distance, session 71.31.62.8-0.81.21.7
Stereotopy head waving bouts, day 70.30.30.90.2-0.10.9
Stereotopy head waving duration, day 70.00.10.10.2-0.20.3
Locomotion velocity, session 85.46.58.32.9-2.72.0
Locomotion distance, session 81.72.43.61.5-1.21.9
Degree of sensitization distance1.01.01.41.2-1.10.6
Degree of sensitization stereotypy0.50.61.5-0.20.41.2
Conditioned locomotion0.80.91.20.8-1.1-0.9
Cocaine response after cond. corrected0.30.40.70.3-0.5-0.9
Cocaine response after cond. not corrected1.21.42.21.3-1.5-0.5
Cocaine response before conditioning1.21.52.41.4-1.50.2
Saline control response2.53.44.1-1.81.6-2.0
Bone: connectivity density0.30.50.7-0.80.90.3
Bone: cortical apparent density2.02.84.3-1.61.3-2.1
Bone: cortical area0.10.20.30.4-0.5-0.2
Bone: cortical porosity1.11.23.50.30.11.9
Bone: cortical porosity1.82.04.80.9-0.52.2
Bone: cortical thickness1.42.33.1-1.81.5-1.2
Bone: cortical thickness2.93.54.1-2.01.7-1.9
Bone: cortical tissue density1.82.54.0-1.51.1-2.0
Condit. Reinf. active minus inactive responses0.60.71.8-0.20.51.4
Condit. Reinf. active-inactive response ratio0.30.30.5-0.70.70.0
Condit. Reinf. active responses0.50.60.7-0.60.80.8
Condit. Reinf. inactive responses1.21.42.3-1.41.50.1
Incentive salience index mean1.01.32.90.8-0.51.7
Condit. Reinf. lever presses1.62.32.51.6-1.41.6
Condit. Reinf. active minus inactive responses0.20.20.30.6-0.60.1
Condit. Reinf. active-inactive response ratio1.01.21.81.3-1.30.4
Condit. Reinf. active responses0.00.00.0-0.00.10.2
Condit. Reinf. inactive responses0.60.81.1-1.11.0-0.6
Condit. Reinf. lever presses0.50.71.5-0.30.61.2
Condit. Reinf. lever reinforcers received0.10.10.20.1-0.00.5
Conditioned reinforcement - actives0.20.30.4-0.60.7-0.4
Conditioned reinforcement - inactives0.10.10.2-0.40.50.0
Conditioned locomotion0.00.00.10.20.00.3
Patch foraging indifference point 0 sec1.22.34.0-1.31.1-2.0
Patch foraging indifference point AUC0.20.20.40.4-0.40.6
Delay disc. indifference point, 0s delay0.60.71.01.0-1.0-0.1
Delay disc. indifference point, 16s delay0.50.50.7-0.80.8-0.5
Delay disc. indifference point, 2s delay1.31.42.21.5-1.40.4
Delay disc. indifference point, 24s delay0.00.00.00.10.1-0.2
Delay disc. indifference point, 4s delay0.60.60.80.6-0.8-0.9
Delay disc. indifference point, 8s delay0.00.00.10.2-0.1-0.0
Indifference point function ln k0.50.80.90.9-0.81.0
Indifference point function log k0.50.80.90.9-0.81.0
Patch foraging total patch changes 0 sec1.32.53.9-1.41.2-2.0
Patch foraging total patch changes 12 sec1.11.42.3-1.10.9-1.5
Patch foraging total patch changes 18 sec3.45.25.8-2.42.1-2.3
Patch foraging total patch changes 24 sec2.33.95.3-2.32.3-1.1
Patch foraging total patch changes 6 sec1.62.42.8-1.61.4-1.7
Patch foraging time to switch 0 sec1.12.24.7-1.10.8-2.2
Patch foraging water rate 0 sec0.00.10.10.3-0.4-0.2
Patch foraging water rate 12 sec0.40.81.3-1.11.1-0.1
Patch foraging water rate 18 sec0.30.51.0-0.50.3-1.0
Patch foraging water rate 24 sec0.40.50.6-0.80.6-0.7
Patch foraging water rate 6 sec0.30.40.6-0.70.5-0.7
Seeking ratio, delayed vs. immediate footshock0.40.41.2-0.4-0.0-1.1
Distance traveled before self-admin0.40.50.60.5-0.8-0.8
Distance traveled after self-admin0.50.60.80.5-0.9-0.9
Extensor digitorum longus weight0.31.11.71.3-1.3-0.1
Bone: elastic displacement0.60.71.2-1.01.10.2
Bone: elastic work0.00.00.1-0.20.2-0.3
Bone: endosteal estimation4.08.713.43.6-3.70.0
Bone: endosteal perimeter3.47.310.73.3-3.30.8
Epididymis fat weight8.529.034.5-5.54.7-5.9
Delta time in closed arm before/after self-admin0.30.30.50.5-0.7-0.4
Delta time in open arm before/after self-admin0.40.40.6-0.70.8-0.2
Diff in mean of infusions in LGA sessions0.10.10.4-0.10.10.6
Delay discount exponential model param0.10.10.2-0.40.40.2
Extinction: sum of active levers before priming0.80.91.11.0-1.00.8
Active lever presses in extinction session 60.40.40.7-0.70.80.1
Bone: final force1.42.26.1-0.60.1-2.5
Bone: final moment1.01.54.3-0.50.2-2.1
Food consumed during 24 hour testing period0.91.31.81.1-1.3-0.9
Glucose6.910.914.03.7-3.32.7
Heart weight0.50.71.11.0-1.0-0.2
Delay discount hyperbolic model param0.20.20.3-0.50.50.2
Intermittent access intake day 1-15 change0.00.00.0-0.00.0-0.0
Intermittent access intake escalation0.30.50.8-0.90.8-0.3
Intermittent access intake escalation 20.10.10.40.2-0.20.6
Intermitt. access day 1 inactive lever presses0.62.54.11.8-2.00.3
Intermitt. access day 15 inactive lever presses0.10.20.20.4-0.5-0.3
Intermitt. access escalation Index0.30.40.60.4-0.60.8
Intermittent access day 1 total infusions0.50.81.4-0.40.91.2
Intermittent access day 15 total infusions0.60.91.6-1.01.30.3
Intermittent access terminal intake (last 3 days)0.40.51.0-0.71.00.4
Intermittent access total infusions0.60.71.2-0.71.10.6
Intermittent access day 1 locomotion0.30.40.8-0.70.9-0.1
Intermittent access day 15 total locomotion0.20.30.9-0.20.1-0.9
Intermittent access total locomotion0.50.60.8-0.70.9-0.6
Intermittent access standard deviation0.61.32.9-0.80.6-1.7
Left kidney weight0.94.011.6-0.4-0.3-3.4
Right kidney weight0.94.212.3-0.2-0.5-3.5
Cocaine induced anxiety0.30.40.80.6-0.90.0
Post-drug Anxiety0.40.40.50.4-0.7-0.7
Baseline Anxiety0.10.10.40.00.0-0.6
Tail length1.66.19.33.0-3.00.3
Length with tail1.87.912.43.3-3.5-0.8
Length without tail1.96.07.12.1-2.7-2.6
Times rat made contact with spout2.42.74.3-1.92.10.1
Lifetime Intake0.40.50.9-0.60.90.4
Liver weight, left2.64.37.02.4-2.6-0.4
Liver weight, right3.35.89.02.9-3.00.2
Locomotor activity0.60.91.61.1-1.30.1
Locomotor testing distance0.50.81.41.0-1.2-0.1
Locomotor testing rearing0.51.11.61.0-1.3-0.7
Locomotion in novel chamber0.10.10.2-0.30.2-0.5
Locomotion in novel chamber post-restriction0.40.72.0-0.30.2-1.4
Fecal boli incidents, locomotor time 10.10.10.2-0.30.40.3
Change in fecal boli incidents, locomotor task2.12.13.41.7-1.9-0.2
Time >=10cm from walls, locomotor time 12.72.93.91.4-2.0-1.6
Bouts of movement, locomotor time 10.00.10.1-0.10.10.4
Total resting periods, locomotor time 10.10.10.40.1-0.10.6
Rest time, locomotor task time 10.50.61.00.7-0.61.0
Distance moved, locomotor task time 10.30.41.2-0.20.1-1.1
Vertical activity count, locomotor time 10.61.53.9-0.60.4-2.0
Time >=10cm from walls, locomotor time 21.52.22.81.7-1.6-1.0
Bouts of movement, locomotor time 20.00.10.10.3-0.30.2
Total resting periods, locomotor time 20.30.50.60.7-0.60.8
Rest time, locomotor task time 21.51.92.91.5-1.70.8
Distance moved, locomotor task time 21.11.32.2-0.91.0-1.5
Vertical activity count, locomotor time 20.60.82.0-0.40.5-1.4
Light reinforcement 10.51.23.6-0.2-0.2-1.9
Light reinforcement 20.60.91.80.5-0.8-1.3
Bone: marrow area3.98.513.13.5-3.6-0.2
Bone: maximum diameter2.34.35.82.4-2.31.3
Bone: maximum force0.51.02.8-0.1-0.1-1.7
Bone: maximum moment0.30.51.60.0-0.2-1.3
Mean time between licks in bursts2.04.85.52.3-2.12.1
Mean num. licks in bursts3.04.76.5-2.52.6-1.1
Cd content in liver0.70.80.9-0.80.9-1.0
Co content in liver1.11.32.8-0.80.6-1.7
Cu content in liver2.42.94.3-2.12.1-0.2
Fe content in liver1.11.31.9-1.11.0-1.4
K content in liver0.20.20.5-0.10.10.7
Mg content in liver2.22.22.41.5-1.51.5
Mn content in liver3.94.46.22.5-2.50.9
Na content in liver0.40.40.7-0.80.8-0.1
Rb content in liver0.00.00.00.1-0.1-0.1
Se content in liver3.94.65.12.3-2.02.1
Sr content in liver0.40.30.60.8-0.6-0.0
Zn content in liver0.30.40.50.7-0.70.4
Bone: minimum diameter2.64.77.12.6-2.70.5
Time in familiar zone, hab. session 14.34.16.8-2.32.60.3
Time in novel zone, hab. session 12.82.84.71.9-2.2-0.2
Total zone transitions, hab. session 10.10.10.40.1-0.00.7
Total locomotion distance, hab. session 10.00.10.2-0.10.10.4
Locomotion velocity, hab. session 10.00.10.20.00.00.4
Time in familiar zone, hab. session 21.11.21.8-1.31.1-0.7
Time in novel zone, hab. session 20.20.20.30.6-0.40.3
Total zone transitions, hab. session 20.10.20.4-0.20.0-0.7
Total locomotion distance, hab. session 20.10.10.1-0.40.2-0.3
Locomotion velocity, hab. session 20.00.00.0-0.10.00.1
Novel to familiar place preference ratio0.10.10.30.00.20.5
Novelty place preference0.10.10.40.2-0.00.6
Time in novel zone, NPP test0.10.20.40.3-0.10.6
Total zone transitions, NPP test0.20.20.7-0.10.20.8
Total locomotion distance, NPP test0.10.20.2-0.40.50.2
Locomotion velocity, NPP test0.20.20.3-0.50.60.3
Intraocular pressure0.91.32.0-1.21.4-0.7
Delta distance traveled before/after self-admin0.00.00.00.2-0.2-0.1
Delta ambulatory time before/after self-admin0.10.20.30.5-0.50.1
Parametrial fat weight1.84.18.9-1.61.0-3.0
Pavlov. Cond. lever latency4.96.111.5-2.11.6-3.4
Pavlov. Cond. magazine entry latency2.63.36.71.4-1.02.6
Pavlov. Cond. change in total contacts1.81.93.31.2-1.01.8
Pavlov. Cond. index score4.25.39.42.0-1.63.1
Pavlov. Cond. latency score4.55.89.92.1-1.73.1
Pavlov. Cond. lever contacts4.35.17.42.2-1.82.7
Pavlov. Cond. magazine entry number1.82.34.9-1.20.8-2.2
Pavlov. Cond. intertrial magazine entries2.53.03.5-1.91.8-1.4
Pavlov. Cond. lever-magazine prob. diff.4.05.09.11.9-1.43.0
Pavlov. Cond. response bias2.93.66.31.7-1.32.5
Pavlov. Cond. lever latency0.81.11.81.1-1.3-0.4
Pavlov. Cond. magazine entry latency0.40.50.90.6-0.40.9
Pavlov. Cond. change in total contacts0.20.40.5-0.50.70.7
Pavlov. Cond. index score0.20.30.7-0.20.40.8
Pavlov. Cond. latency score0.20.20.4-0.20.40.6
Pavlov. Cond. lever contacts0.60.81.4-1.01.20.2
Pavlov. Cond. magazine entry number0.00.00.1-0.10.0-0.3
Pavlov. Cond. intertrial magazine entries0.60.91.20.9-0.91.1
Pavlov. Cond. lever-magazine prob. diff.0.20.20.5-0.20.40.7
Pavlov. Cond. response bias0.30.40.6-0.40.60.8
Time in closed arm before self-admin0.20.20.40.6-0.60.2
Time in closed arm after self-admin0.10.10.10.2-0.3-0.1
Time in open arm before self-admin0.60.61.80.30.01.3
Time in open arm after self-admin0.20.20.6-0.10.30.7
Bone: periosteal estimation1.94.06.42.4-2.5-0.3
Bone: periosteal perimeter1.72.94.22.0-2.10.5
Bone: post-yield work1.82.63.92.0-2.00.5
Progressive ratio test 1 active lever presses0.00.00.00.10.20.2
Progressive ratio test 1 breakpoint0.00.00.00.10.10.2
Progressive ratio test 1 inactive lever presses0.50.80.9-0.90.8-0.9
Progressive ratio test 2 active lever presses0.30.40.6-0.60.80.3
Progressive ratio test 2 breakpoint0.50.50.8-0.80.90.4
Progressive ratio test 2 inactive lever presses0.40.71.30.7-0.51.1
Incentive Sensitization - Responses0.20.20.5-0.30.30.7
Incentive Sensitization - Breakpoint0.20.30.4-0.50.50.6
Sum of active levers in priming session hrs 5-60.50.50.90.6-0.40.9
Progressive ratio2.03.28.7-0.90.3-2.9
Food seeking constrained by brief footshock0.30.30.5-0.70.7-0.2
Seeking ratio, punishment vs. effort1.72.46.60.8-0.32.6
Retroperitoneal fat weight0.20.91.8-0.80.5-1.3
Reaction time number correct0.91.82.0-1.41.2-1.3
Reaction time mean minus median1.12.65.21.3-1.02.3
Reaction time mean minus median AUC1.12.86.31.3-0.82.5
Reaction time num false alarms0.60.81.21.0-1.10.4
Reaction time num false alarms AUC0.71.01.61.2-1.30.4
Reaction time trials correct on left0.91.82.0-1.41.2-1.3
Reaction time trials on left0.91.61.8-1.41.2-1.3
Reaction time mean2.03.33.61.9-1.61.9
Reaction time mean AUC1.82.83.21.8-1.51.8
Median of all reaction times1.52.22.81.7-1.51.3
Reaction time omissions1.11.62.11.4-1.21.1
Reaction time false alarm rate2.23.03.71.9-1.91.3
Reaction time premature initiation rate0.00.10.10.2-0.2-0.2
Reaction time premature initiations0.40.61.4-0.50.5-1.2
Std. dev. reaction times2.44.56.52.0-1.72.6
Reaction time trials completed0.91.61.8-1.41.2-1.3
Reaction time trials AUC0.91.61.8-1.41.2-1.3
Run reversals in cocaine runway, females0.90.91.1-1.01.0-0.8
Run reversals in cocaine runway, males0.70.70.90.9-0.70.9
Latency to leave start box in cocaine runway1.01.21.31.1-1.11.0
Latency to leave start box in cocaine runway, F0.50.60.70.8-0.70.9
Latency to leave start box in cocaine runway, M0.40.40.70.7-0.80.1
Std. dev. time between licks in bursts5.06.88.93.0-2.91.8
Total sessions with >9 infusions0.10.20.4-0.30.60.2
Short access day 1 total inactive lever presses0.81.11.31.1-0.81.1
Short access day 10 total inactive lever presses0.10.20.40.3-0.6-0.2
Short access day 1 total infusions0.30.41.00.30.11.0
Short access day 10 total infusions0.40.50.9-0.71.00.1
Short access total infusions0.20.20.4-0.20.60.6
Short access day 1 locomotion0.10.10.30.3-0.10.5
Short access day 10 total locomotion1.32.53.61.8-1.9-0.9
Short access total locomotion0.60.71.21.1-1.0-0.2
One hour access (0.3 mA shock)0.20.30.5-0.40.40.7
Compulsive drug intake1.82.23.81.6-2.00.5
One hour access (shock baseline)1.21.83.3-1.51.80.2
Social response proportion1.01.21.91.2-1.4-0.5
Social responses0.50.71.20.8-1.1-0.5
Social time2.53.45.42.1-2.30.7
Soleus weight4.312.618.74.3-4.31.0
Bone: stiffness0.71.23.0-0.70.4-1.7
Tibialis anterior weight0.62.02.8-1.41.1-1.7
Time to tail flick, vehicle, before self-admin0.30.30.6-0.60.1-0.8
Time to tail flick, vehicle, after self-admin0.30.40.50.7-0.50.7
Time to tail flick, test, before self-admin0.40.40.7-0.80.7-0.2
Time to tail flick, test, after self-admin0.90.91.6-0.70.81.3
Delta time to tail flick, vehicle, before/after SA0.60.61.3-0.20.71.1
Delta time to tail flick, test, before/after SA0.10.20.2-0.40.50.2
Tibia length2.05.69.12.7-3.0-0.7
Ambulatory time before self-admin0.00.00.10.1-0.2-0.3
Ambulatory time after self-admin0.30.40.70.5-0.8-0.4
Bone: tissue strength0.10.10.20.00.0-0.5
Total heroin consumption0.10.10.20.2-0.40.2
Bone: trabecular number1.72.84.4-2.02.10.4
Bone: trabecular spacing1.72.23.41.7-1.8-0.6
Bone: trabecular thickness1.31.62.5-1.51.6-0.2
Bone: trabecular tissue density0.20.30.80.4-0.10.9
Water consumed over 24 hours0.40.50.80.8-0.90.3
Number of responses in last shaping day3.13.44.82.2-2.01.2