LOC103694394

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 NAcc gene expression LOC103694394 0.05 0.02 3.0e-06 0.03 0.03 0.04 0.03 6.2e-05 1.1e-05 5.4e-07 9.3e-06
2 Adipose gene expression LOC103694394 0.32 0.1 0.0e+00 0.13 0.18 0.16 0.16 1.6e-14 3.2e-19 6.2e-17 1.2e-17
3 Eye gene expression LOC103694394 0.45 0.16 5.0e-03 0.01 0.02 -0.01 0.01 2.2e-01 1.6e-01 4.5e-01 2.3e-01

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
Bone: apparent density0.30.51.00.2-1.00.6
Area under the delay curve0.81.02.20.8-1.5-0.3
BMI with tail0.51.83.4-0.61.3-1.8
BMI without tail0.92.96.8-1.1-0.8-2.6
Body weight2.29.616.5-4.1-1.0-3.4
Weight adjusted by age1.52.33.2-1.11.6-1.8
Bone surface0.20.30.6-0.8-0.30.6
Bone volume0.00.10.1-0.4-0.20.2
Breakpoint value in progressive ratio session0.60.71.01.00.31.0
Number of licking bursts0.30.51.4-0.0-0.01.2
Context. condit. distance diff. score1.11.43.20.3-1.80.9
Locomotion velocity, session 11.21.31.61.3-1.11.0
Locomotion distance, session 11.21.62.51.4-0.51.6
Locomotion velocity, session 21.21.42.21.50.81.2
Locomotion distance, session 20.91.33.01.70.20.9
Locomotion velocity, session 30.30.41.01.0-0.1-0.1
Locomotion distance, session 31.11.23.40.6-1.80.1
Stereotopy head waving bouts, day 30.10.10.1-0.30.1-0.4
Stereotopy head waving duration, day 31.01.12.80.71.70.3
Locomotion velocity, session 70.10.20.30.6-0.20.3
Locomotion distance, session 71.51.83.21.81.20.9
Stereotopy head waving bouts, day 70.80.91.6-0.5-1.3-0.9
Stereotopy head waving duration, day 70.50.61.0-0.3-1.0-0.8
Locomotion velocity, session 80.40.51.40.1-0.21.2
Locomotion distance, session 81.01.51.81.0-1.31.4
Degree of sensitization distance2.42.46.90.62.60.3
Degree of sensitization stereotypy1.11.23.5-0.2-1.9-0.2
Conditioned locomotion1.41.62.8-1.41.70.3
Cocaine response after cond. corrected0.81.02.80.01.7-0.3
Cocaine response after cond. not corrected0.50.61.5-0.21.2-0.4
Cocaine response before conditioning0.20.20.6-0.3-0.80.2
Saline control response0.81.02.0-0.6-0.8-1.4
Bone: connectivity density0.50.71.1-0.2-1.01.1
Bone: cortical apparent density0.50.61.8-1.40.0-0.3
Bone: cortical area1.52.43.5-1.3-1.9-1.4
Bone: cortical porosity0.80.81.11.01.00.6
Bone: cortical porosity0.00.00.10.3-0.0-0.1
Bone: cortical thickness0.10.20.40.0-0.6-0.6
Bone: cortical thickness0.00.00.10.10.2-0.3
Bone: cortical tissue density0.40.61.7-1.30.1-0.3
Condit. Reinf. active minus inactive responses0.30.30.8-0.4-0.90.2
Condit. Reinf. active-inactive response ratio0.10.10.3-0.5-0.0-0.2
Condit. Reinf. active responses0.50.61.9-0.0-1.40.1
Condit. Reinf. inactive responses0.70.91.41.0-1.20.6
Incentive salience index mean1.21.53.1-1.1-1.8-0.1
Condit. Reinf. lever presses1.62.24.2-1.5-2.00.1
Condit. Reinf. active minus inactive responses1.01.31.81.30.81.2
Condit. Reinf. active-inactive response ratio1.41.63.50.71.90.9
Condit. Reinf. active responses0.60.81.71.3-0.20.8
Condit. Reinf. inactive responses1.51.94.90.6-2.2-0.7
Condit. Reinf. lever presses2.02.85.61.50.72.4
Condit. Reinf. lever reinforcers received0.91.32.41.5-0.11.2
Conditioned reinforcement - actives0.40.61.50.3-1.20.6
Conditioned reinforcement - inactives0.71.01.80.9-0.61.3
Conditioned locomotion1.11.43.8-0.6-2.00.2
Patch foraging indifference point 0 sec0.20.51.2-0.3-0.1-1.1
Patch foraging indifference point AUC0.10.20.40.60.00.3
Delay disc. indifference point, 0s delay0.00.00.0-0.20.1-0.1
Delay disc. indifference point, 16s delay0.91.02.81.7-0.50.1
Delay disc. indifference point, 2s delay0.30.40.90.9-0.20.4
Delay disc. indifference point, 24s delay2.93.25.0-0.2-2.2-2.2
Delay disc. indifference point, 4s delay0.10.10.20.2-0.3-0.4
Delay disc. indifference point, 8s delay0.81.02.70.5-1.6-0.0
Indifference point function ln k0.30.50.9-0.9-0.7-0.1
Indifference point function log k0.30.50.9-0.9-0.7-0.1
Patch foraging total patch changes 0 sec0.30.61.4-0.5-0.3-1.2
Patch foraging total patch changes 12 sec0.40.50.7-0.9-0.3-0.8
Patch foraging total patch changes 18 sec0.30.41.30.0-0.2-1.1
Patch foraging total patch changes 24 sec0.10.20.60.80.2-0.1
Patch foraging total patch changes 6 sec0.20.30.60.30.4-0.8
Patch foraging time to switch 0 sec0.51.02.30.71.5-0.5
Patch foraging water rate 0 sec0.91.82.7-1.6-1.5-0.8
Patch foraging water rate 12 sec0.30.61.4-1.2-0.50.1
Patch foraging water rate 18 sec1.52.35.8-0.9-2.40.7
Patch foraging water rate 24 sec0.50.71.0-0.9-0.71.0
Patch foraging water rate 6 sec1.11.64.2-2.0-0.60.3
Seeking ratio, delayed vs. immediate footshock1.11.32.21.00.91.5
Distance traveled before self-admin1.01.32.5-1.11.6-0.2
Distance traveled after self-admin1.21.43.80.72.00.1
Extensor digitorum longus weight0.20.92.40.6-0.11.6
Bone: elastic displacement0.10.20.4-0.30.7-0.1
Bone: elastic work0.40.51.2-1.1-0.1-0.5
Bone: endosteal estimation1.53.45.8-2.4-1.1-1.7
Bone: endosteal perimeter1.32.73.4-1.7-1.8-1.3
Epididymis fat weight0.20.71.9-0.30.3-1.4
Delta time in closed arm before/after self-admin2.62.44.0-2.00.5-1.8
Delta time in open arm before/after self-admin0.30.30.4-0.30.60.7
Diff in mean of infusions in LGA sessions0.91.12.10.6-1.50.9
Delay discount exponential model param0.80.92.0-0.91.40.3
Extinction: sum of active levers before priming1.01.12.11.40.60.9
Active lever presses in extinction session 62.12.04.62.10.51.1
Bone: final force2.74.47.3-1.8-1.6-2.7
Bone: final moment2.74.36.4-1.8-1.8-2.5
Food consumed during 24 hour testing period0.10.20.4-0.6-0.10.3
Glucose2.64.06.1-2.5-2.2-1.0
Heart weight0.60.91.4-0.9-0.8-1.2
Delay discount hyperbolic model param0.80.91.8-1.01.30.1
Intermittent access intake day 1-15 change0.30.61.10.40.8-1.0
Intermittent access intake escalation0.20.50.70.50.7-0.9
Intermittent access intake escalation 20.20.20.40.60.1-0.5
Intermitt. access day 1 inactive lever presses0.31.12.60.10.81.6
Intermitt. access day 15 inactive lever presses0.30.61.1-0.3-1.10.8
Intermitt. access escalation Index0.20.30.40.5-0.60.6
Intermittent access day 1 total infusions0.71.12.60.90.01.6
Intermittent access day 15 total infusions0.30.50.70.80.80.5
Intermittent access terminal intake (last 3 days)0.10.10.30.50.10.3
Intermittent access total infusions0.70.81.30.80.51.2
Intermittent access day 1 locomotion0.60.71.7-1.3-0.20.7
Intermittent access day 15 total locomotion0.20.41.1-1.1-0.2-0.4
Intermittent access total locomotion0.30.40.6-0.60.40.8
Intermittent access standard deviation0.30.60.9-0.20.9-1.0
Left kidney weight2.310.819.0-4.4-1.6-3.3
Right kidney weight3.817.530.0-5.5-1.3-4.6
Cocaine induced anxiety0.50.61.70.4-1.30.3
Post-drug Anxiety0.91.01.31.1-0.61.1
Baseline Anxiety0.20.20.50.20.70.2
Tail length1.97.310.7-2.8-3.3-1.8
Length with tail2.611.420.6-4.5-2.9-2.3
Length without tail2.47.718.0-4.2-0.1-2.3
Times rat made contact with spout2.63.06.32.5-0.01.7
Lifetime Intake0.40.40.90.6-0.01.0
Liver weight, left0.71.22.3-1.5-0.9-0.8
Liver weight, right1.52.54.3-2.1-1.4-1.2
Locomotor activity0.40.71.3-0.51.2-0.7
Locomotor testing distance0.30.51.2-0.31.1-0.3
Locomotor testing rearing0.51.01.5-1.20.8-0.9
Locomotion in novel chamber0.50.61.0-0.4-1.00.7
Locomotion in novel chamber post-restriction1.82.95.3-1.4-1.2-2.3
Fecal boli incidents, locomotor time 10.81.22.2-1.5-0.7-0.9
Change in fecal boli incidents, locomotor task5.04.913.2-0.13.6-1.2
Time >=10cm from walls, locomotor time 11.11.23.1-1.80.6-0.4
Bouts of movement, locomotor time 10.80.92.50.2-1.6-0.2
Total resting periods, locomotor time 10.30.41.10.2-1.0-0.0
Rest time, locomotor task time 10.91.21.7-0.9-1.3-1.0
Distance moved, locomotor task time 11.52.23.71.51.90.9
Vertical activity count, locomotor time 10.71.62.61.51.60.2
Time >=10cm from walls, locomotor time 23.24.79.0-3.00.6-2.2
Bouts of movement, locomotor time 20.50.92.40.4-1.60.1
Total resting periods, locomotor time 20.40.71.70.5-1.30.3
Rest time, locomotor task time 20.40.51.4-0.3-1.2-0.1
Distance moved, locomotor task time 20.50.61.2-0.31.1-0.8
Vertical activity count, locomotor time 20.30.51.1-0.21.0-0.5
Light reinforcement 11.12.64.4-1.62.1-0.9
Light reinforcement 20.71.11.6-1.31.3-0.2
Bone: marrow area1.84.06.6-2.6-1.3-1.9
Bone: maximum diameter0.91.62.3-1.1-1.5-1.1
Bone: maximum force2.34.14.6-1.9-2.1-2.0
Bone: maximum moment2.34.05.1-1.9-2.3-1.8
Mean time between licks in bursts0.30.61.8-0.2-0.01.3
Mean num. licks in bursts0.40.61.91.4-0.1-0.1
Cd content in liver1.01.11.61.21.30.6
Co content in liver0.91.02.70.21.7-0.5
Cu content in liver0.20.20.50.30.7-0.0
Fe content in liver1.41.72.7-1.31.6-0.9
K content in liver1.31.23.1-0.2-1.70.8
Mg content in liver1.01.02.50.4-0.61.6
Mn content in liver0.10.10.20.1-0.40.5
Na content in liver0.30.40.8-0.90.30.5
Rb content in liver0.60.71.40.31.20.7
Se content in liver1.61.94.70.80.52.2
Sr content in liver0.50.40.90.4-0.40.9
Zn content in liver0.70.71.6-0.60.51.3
Bone: minimum diameter2.54.65.5-2.3-2.2-1.9
Time in familiar zone, hab. session 11.31.33.61.9-0.1-0.3
Time in novel zone, hab. session 12.32.36.4-2.50.7-0.2
Total zone transitions, hab. session 11.41.92.21.4-1.51.3
Total locomotion distance, hab. session 10.81.12.41.5-0.21.0
Locomotion velocity, hab. session 11.31.93.92.00.31.3
Time in familiar zone, hab. session 20.20.30.60.40.00.8
Time in novel zone, hab. session 20.10.10.3-0.10.3-0.5
Total zone transitions, hab. session 20.40.51.0-0.5-1.00.3
Total locomotion distance, hab. session 20.60.82.10.60.21.4
Locomotion velocity, hab. session 20.71.02.50.70.21.6
Novel to familiar place preference ratio0.70.81.2-1.1-0.3-1.0
Novelty place preference0.80.81.3-1.0-0.2-1.1
Time in novel zone, NPP test0.80.91.4-1.0-0.4-1.2
Total zone transitions, NPP test0.20.30.40.4-0.50.6
Total locomotion distance, NPP test0.10.10.30.10.20.5
Locomotion velocity, NPP test0.20.20.50.30.40.7
Intraocular pressure1.11.64.0-2.0-0.1-0.9
Delta distance traveled before/after self-admin0.80.81.71.30.70.5
Delta ambulatory time before/after self-admin0.30.40.80.90.20.5
Parametrial fat weight0.40.82.3-0.31.5-0.4
Pavlov. Cond. lever latency0.30.40.7-0.00.8-0.8
Pavlov. Cond. magazine entry latency1.31.63.6-0.9-1.90.7
Pavlov. Cond. change in total contacts1.01.12.1-1.1-1.4-0.4
Pavlov. Cond. index score0.60.81.7-0.7-1.30.4
Pavlov. Cond. latency score0.50.60.7-0.9-0.90.5
Pavlov. Cond. lever contacts0.30.30.7-0.2-0.80.4
Pavlov. Cond. magazine entry number1.72.15.80.62.4-0.5
Pavlov. Cond. intertrial magazine entries0.70.81.40.7-1.2-0.8
Pavlov. Cond. lever-magazine prob. diff.0.91.12.8-0.7-1.70.2
Pavlov. Cond. response bias1.51.84.9-0.2-2.20.7
Pavlov. Cond. lever latency1.82.54.7-1.2-1.1-2.2
Pavlov. Cond. magazine entry latency0.40.51.1-1.10.30.6
Pavlov. Cond. change in total contacts2.33.76.31.11.92.5
Pavlov. Cond. index score1.01.33.20.10.81.8
Pavlov. Cond. latency score1.01.32.80.01.01.7
Pavlov. Cond. lever contacts1.52.14.01.11.02.0
Pavlov. Cond. magazine entry number0.50.60.91.0-0.7-0.6
Pavlov. Cond. intertrial magazine entries0.81.22.11.1-1.40.6
Pavlov. Cond. lever-magazine prob. diff.0.91.22.80.10.81.7
Pavlov. Cond. response bias1.21.63.60.51.01.9
Time in closed arm before self-admin0.81.02.20.51.50.7
Time in closed arm after self-admin0.80.82.1-0.31.5-0.6
Time in open arm before self-admin0.10.10.10.2-0.3-0.2
Time in open arm after self-admin0.10.10.20.2-0.50.4
Bone: periosteal estimation1.73.54.5-2.1-1.6-1.9
Bone: periosteal perimeter1.62.74.9-1.1-2.2-1.4
Bone: post-yield work3.14.510.0-1.8-3.2-0.7
Progressive ratio test 1 active lever presses0.50.60.8-0.7-0.90.6
Progressive ratio test 1 breakpoint0.40.50.5-0.7-0.70.6
Progressive ratio test 1 inactive lever presses0.40.51.3-0.4-0.51.1
Progressive ratio test 2 active lever presses0.40.40.70.70.30.8
Progressive ratio test 2 breakpoint0.50.50.90.80.30.9
Progressive ratio test 2 inactive lever presses0.81.32.81.1-0.01.7
Incentive Sensitization - Responses0.40.61.11.00.50.7
Incentive Sensitization - Breakpoint0.50.61.01.00.60.6
Sum of active levers in priming session hrs 5-64.34.06.72.02.61.0
Progressive ratio0.20.30.7-0.20.5-0.8
Food seeking constrained by brief footshock0.40.40.50.7-0.7-0.6
Seeking ratio, punishment vs. effort0.10.10.30.6-0.1-0.0
Retroperitoneal fat weight0.10.60.8-0.80.6-0.9
Reaction time number correct0.10.30.7-0.2-0.80.2
Reaction time mean minus median1.84.410.1-1.7-3.2-0.0
Reaction time mean minus median AUC0.82.13.8-1.4-2.00.7
Reaction time num false alarms1.01.42.21.51.20.8
Reaction time num false alarms AUC1.11.62.61.61.20.9
Reaction time trials correct on left0.10.30.7-0.2-0.80.2
Reaction time trials on left0.20.30.7-0.2-0.90.3
Reaction time mean1.82.94.6-2.1-1.9-0.6
Reaction time mean AUC2.13.35.1-2.3-2.1-0.7
Median of all reaction times1.21.73.6-1.9-1.0-0.7
Reaction time omissions0.81.22.1-0.2-1.21.4
Reaction time false alarm rate1.21.62.51.41.60.6
Reaction time premature initiation rate0.10.20.4-0.60.0-0.4
Reaction time premature initiations0.10.20.5-0.7-0.3-0.2
Std. dev. reaction times1.63.06.5-1.6-2.5-0.1
Reaction time trials completed0.20.30.7-0.2-0.90.3
Reaction time trials AUC0.10.30.7-0.3-0.80.3
Run reversals in cocaine runway, females0.10.10.2-0.4-0.20.0
Run reversals in cocaine runway, males0.70.71.4-0.40.71.2
Latency to leave start box in cocaine runway0.20.20.40.60.50.2
Latency to leave start box in cocaine runway, F0.10.10.30.4-0.00.5
Latency to leave start box in cocaine runway, M0.70.61.20.51.1-0.6
Std. dev. time between licks in bursts1.72.36.4-2.50.2-0.7
Total sessions with >9 infusions0.70.91.60.4-1.21.0
Short access day 1 total inactive lever presses1.21.63.50.7-1.90.8
Short access day 10 total inactive lever presses0.40.92.20.4-0.71.5
Short access day 1 total infusions0.50.61.30.4-1.10.7
Short access day 10 total infusions0.50.71.00.7-0.71.0
Short access total infusions0.60.71.30.3-1.10.9
Short access day 1 locomotion0.30.30.60.50.30.7
Short access day 10 total locomotion0.50.82.5-1.6-0.0-0.2
Short access total locomotion0.40.41.0-1.0-0.00.5
One hour access (0.3 mA shock)2.73.17.61.3-0.02.8
Compulsive drug intake1.72.03.40.61.51.8
One hour access (shock baseline)0.60.81.30.6-0.91.1
Social response proportion0.20.30.4-0.60.60.2
Social responses0.00.00.1-0.2-0.00.3
Social time0.30.41.0-0.0-0.41.0
Soleus weight0.82.34.1-2.0-1.2-1.2
Bone: stiffness1.01.72.4-0.9-1.3-1.6
Tibialis anterior weight0.72.43.61.70.71.9
Time to tail flick, vehicle, before self-admin4.64.813.0-0.7-3.6-0.8
Time to tail flick, vehicle, after self-admin0.30.30.60.1-0.8-0.6
Time to tail flick, test, before self-admin0.60.71.10.70.61.1
Time to tail flick, test, after self-admin0.50.60.90.2-0.81.0
Delta time to tail flick, vehicle, before/after SA0.80.81.70.81.30.1
Delta time to tail flick, test, before/after SA1.41.41.9-1.2-1.4-0.8
Tibia length2.56.912.2-3.5-1.7-2.4
Ambulatory time before self-admin0.71.13.1-0.41.80.3
Ambulatory time after self-admin1.72.04.81.02.20.6
Bone: tissue strength2.12.13.5-1.3-1.9-1.1
Total heroin consumption1.82.22.91.51.21.7
Bone: trabecular number0.30.61.3-0.0-1.20.6
Bone: trabecular spacing0.71.02.3-0.60.5-1.5
Bone: trabecular thickness0.30.30.7-0.5-0.8-0.1
Bone: trabecular tissue density0.40.61.5-1.2-0.50.4
Water consumed over 24 hours0.91.22.50.6-0.91.6
Number of responses in last shaping day0.40.40.6-0.80.4-0.7