LOC103692978

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 PL gene expression LOC103692978 0.03 0.03 8.6e-04 0.01 0.01 0.01 0.01 7.3e-03 8.3e-03 4.3e-02 2.3e-02
2 PL alternative polyA XR_005487582.1 0.02 0.02 7.3e-03 0.01 0.01 0 0.01 7.4e-03 2.2e-02 1.5e-01 3.5e-02
3 PL isoform ratio XR_005487583.1 0.27 0.19 4.7e-04 0.03 0.01 0.02 0.03 6.7e-04 1.6e-02 4.1e-03 7.7e-04
4 NAcc gene expression LOC103692978 0.02 0.02 3.2e-03 0.02 0.01 0.02 0.01 4.1e-03 6.6e-03 3.2e-03 7.8e-03

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density7.412.418.2-4.34.1-3.12.2
Area under the delay curve0.70.81.3-0.81.1-1.0-0.0
BMI with tail3.110.215.3-3.63.9-3.41.0
BMI without tail0.30.51.80.20.4-0.4-1.3
Body weight4.820.029.6-5.05.4-5.1-0.4
Weight adjusted by age2.12.44.3-1.51.6-2.10.4
Bone surface8.915.722.6-4.74.5-3.72.4
Bone volume6.611.216.6-4.13.8-3.12.0
Breakpoint value in progressive ratio session0.30.31.0-0.20.3-0.41.0
Number of licking bursts0.80.92.60.9-0.4-0.4-1.6
Context. condit. distance diff. score0.50.51.3-0.40.6-0.6-1.1
Locomotion velocity, session 11.01.11.81.0-1.10.7-1.3
Locomotion distance, session 12.43.15.21.8-2.02.30.2
Locomotion velocity, session 20.30.30.60.4-0.70.7-0.1
Locomotion distance, session 22.02.74.51.6-1.92.1-0.1
Locomotion velocity, session 33.03.54.72.0-2.12.2-0.8
Locomotion distance, session 33.74.05.82.2-2.42.4-0.2
Stereotopy head waving bouts, day 31.01.21.8-1.31.1-1.3-0.3
Stereotopy head waving duration, day 30.40.50.7-0.80.6-0.8-0.1
Locomotion velocity, session 70.40.41.40.4-0.20.1-1.2
Locomotion distance, session 71.11.42.01.4-1.20.9-1.2
Stereotopy head waving bouts, day 70.91.01.8-1.10.9-1.4-0.1
Stereotopy head waving duration, day 71.01.32.3-1.21.1-1.50.0
Locomotion velocity, session 80.20.21.00.00.1-0.1-1.0
Locomotion distance, session 81.21.82.71.3-1.41.6-0.9
Degree of sensitization distance0.60.61.0-0.60.9-1.0-0.5
Degree of sensitization stereotypy0.30.30.8-0.40.4-0.9-0.3
Conditioned locomotion0.20.30.5-0.30.1-0.7-0.7
Cocaine response after cond. corrected0.30.40.90.10.10.80.9
Cocaine response after cond. not corrected1.11.32.20.8-0.81.51.2
Cocaine response before conditioning2.83.46.02.0-2.41.90.4
Saline control response0.20.31.1-0.40.0-0.01.0
Bone: connectivity density5.78.912.5-3.53.3-2.42.6
Bone: cortical apparent density0.20.30.50.7-0.70.3-0.3
Bone: cortical area7.811.816.2-3.84.0-3.62.0
Bone: cortical porosity0.70.71.70.7-1.30.90.0
Bone: cortical porosity0.91.02.30.9-1.51.0-0.0
Bone: cortical thickness3.25.37.8-2.32.8-2.41.6
Bone: cortical thickness0.30.40.8-0.30.6-0.30.9
Bone: cortical tissue density0.30.40.70.7-0.80.5-0.4
Condit. Reinf. active minus inactive responses0.70.72.50.2-0.20.61.6
Condit. Reinf. active-inactive response ratio0.70.82.7-0.50.40.11.6
Condit. Reinf. active responses0.81.01.60.8-0.81.01.3
Condit. Reinf. inactive responses1.92.33.41.9-1.81.5-0.3
Incentive salience index mean0.20.20.8-0.10.4-0.00.9
Condit. Reinf. lever presses0.20.30.6-0.40.8-0.50.2
Condit. Reinf. active minus inactive responses0.10.10.30.0-0.3-0.00.5
Condit. Reinf. active-inactive response ratio0.60.61.20.6-0.60.51.1
Condit. Reinf. active responses0.10.20.40.4-0.60.30.2
Condit. Reinf. inactive responses0.60.70.90.8-1.00.6-1.0
Condit. Reinf. lever presses0.10.20.6-0.0-0.10.20.8
Condit. Reinf. lever reinforcers received0.40.50.90.8-0.90.70.2
Conditioned reinforcement - actives1.01.01.51.1-1.21.1-0.1
Conditioned reinforcement - inactives1.11.21.61.3-1.31.2-0.5
Conditioned locomotion0.30.30.70.4-0.60.2-0.8
Patch foraging indifference point 0 sec1.82.83.71.9-1.91.7-1.1
Patch foraging indifference point AUC0.20.20.50.3-0.70.30.4
Delay disc. indifference point, 0s delay1.21.32.3-1.21.2-1.5-0.2
Delay disc. indifference point, 16s delay1.01.01.8-0.91.2-1.3-0.3
Delay disc. indifference point, 2s delay0.80.91.3-1.21.0-1.1-0.2
Delay disc. indifference point, 24s delay1.21.11.7-1.11.2-1.3-0.3
Delay disc. indifference point, 4s delay0.10.10.3-0.40.5-0.20.2
Delay disc. indifference point, 8s delay1.92.03.2-1.51.8-1.60.4
Indifference point function ln k2.73.85.5-2.42.2-2.10.4
Indifference point function log k2.73.85.5-2.42.2-2.10.4
Patch foraging total patch changes 0 sec1.72.83.61.9-1.91.5-1.2
Patch foraging total patch changes 12 sec1.41.82.91.6-1.71.2-0.4
Patch foraging total patch changes 18 sec3.03.86.52.2-2.51.7-1.0
Patch foraging total patch changes 24 sec1.92.44.11.6-1.50.7-2.0
Patch foraging total patch changes 6 sec1.72.63.71.8-1.91.8-0.3
Patch foraging time to switch 0 sec1.92.94.12.0-2.01.7-0.8
Patch foraging water rate 0 sec2.54.05.7-2.22.4-2.3-0.0
Patch foraging water rate 12 sec2.94.56.5-2.62.5-2.3-0.2
Patch foraging water rate 18 sec0.50.71.6-0.40.8-0.7-1.2
Patch foraging water rate 24 sec2.43.34.8-2.02.1-2.20.3
Patch foraging water rate 6 sec2.94.36.0-2.42.5-2.30.3
Seeking ratio, delayed vs. immediate footshock1.01.23.9-0.60.7-0.02.0
Distance traveled before self-admin1.31.32.41.2-1.00.7-1.6
Distance traveled after self-admin0.30.30.70.4-0.40.60.8
Extensor digitorum longus weight3.413.219.7-3.74.4-4.4-0.3
Bone: elastic displacement3.74.25.72.4-2.42.0-1.1
Bone: elastic work0.00.00.20.0-0.20.1-0.4
Bone: endosteal estimation5.512.018.2-4.33.8-3.80.8
Bone: endosteal perimeter5.411.114.2-3.73.8-3.61.8
Epididymis fat weight0.30.70.9-0.70.9-0.8-0.9
Delta time in closed arm before/after self-admin0.60.61.9-0.60.50.11.4
Delta time in open arm before/after self-admin2.82.74.02.0-1.91.7-0.5
Diff in mean of infusions in LGA sessions1.11.21.7-1.31.3-0.81.0
Delay discount exponential model param0.60.61.10.8-1.00.90.1
Extinction: sum of active levers before priming0.40.40.6-0.60.6-0.70.4
Active lever presses in extinction session 61.11.13.6-0.60.6-0.31.9
Bone: final force7.412.017.0-4.14.1-3.41.8
Bone: final moment7.712.418.0-4.24.1-3.32.0
Food consumed during 24 hour testing period2.93.59.8-1.61.2-0.63.1
Glucose0.20.40.7-0.10.6-0.7-0.8
Heart weight0.50.82.9-0.20.10.31.7
Delay discount hyperbolic model param0.60.60.90.8-1.00.90.1
Intermittent access intake day 1-15 change0.90.91.31.2-0.91.20.2
Intermittent access intake escalation0.70.71.11.0-0.71.00.3
Intermittent access intake escalation 21.01.01.51.2-0.91.20.0
Intermitt. access day 1 inactive lever presses2.72.94.01.8-2.01.3-1.6
Intermitt. access day 15 inactive lever presses1.61.84.01.0-1.30.7-2.0
Intermitt. access escalation Index0.80.71.80.8-0.60.2-1.3
Intermittent access day 1 total infusions0.91.01.41.1-1.21.20.3
Intermittent access day 15 total infusions1.61.82.71.7-1.51.5-0.5
Intermittent access terminal intake (last 3 days)1.81.92.71.7-1.61.5-0.3
Intermittent access total infusions1.61.82.71.6-1.51.5-0.4
Intermittent access day 1 locomotion1.01.02.21.0-0.90.4-1.5
Intermittent access day 15 total locomotion1.61.74.41.2-0.90.4-2.1
Intermittent access total locomotion2.83.15.51.9-1.70.9-2.4
Intermittent access standard deviation0.60.60.90.8-0.61.00.7
Left kidney weight0.51.32.9-1.11.2-0.11.7
Right kidney weight2.26.19.1-2.93.0-2.6-0.3
Cocaine induced anxiety0.91.01.4-1.21.0-1.2-0.4
Post-drug Anxiety3.33.65.8-2.42.0-2.20.1
Baseline Anxiety0.70.71.1-0.91.0-1.0-0.1
Tail length0.20.72.60.4-0.30.1-1.6
Length with tail1.55.67.8-2.82.8-2.6-0.4
Length without tail5.311.616.7-4.14.0-3.41.4
Times rat made contact with spout0.40.51.50.5-0.20.41.2
Lifetime Intake1.41.62.71.6-1.31.3-0.5
Liver weight, left1.52.33.8-1.61.9-1.7-0.1
Liver weight, right1.32.23.4-1.41.8-1.7-0.7
Locomotor activity0.50.81.51.2-1.00.90.2
Locomotor testing distance1.72.84.52.1-1.91.7-0.2
Locomotor testing rearing1.62.43.81.9-1.71.3-1.2
Locomotion in novel chamber0.50.71.1-0.80.8-1.1-0.5
Locomotion in novel chamber post-restriction0.70.82.4-0.20.6-0.8-1.6
Fecal boli incidents, locomotor time 11.41.52.91.4-1.01.70.2
Change in fecal boli incidents, locomotor task1.00.91.7-1.30.9-1.1-0.2
Time >=10cm from walls, locomotor time 10.30.30.5-0.30.7-0.5-0.6
Bouts of movement, locomotor time 10.20.20.4-0.00.5-0.2-0.7
Total resting periods, locomotor time 10.10.20.20.5-0.00.4-0.5
Rest time, locomotor task time 10.20.30.40.7-0.30.4-0.6
Distance moved, locomotor task time 10.10.10.4-0.2-0.30.20.6
Vertical activity count, locomotor time 11.31.42.2-1.51.2-0.71.2
Time >=10cm from walls, locomotor time 20.40.40.60.7-0.60.5-0.6
Bouts of movement, locomotor time 22.73.04.0-1.91.8-2.0-1.0
Total resting periods, locomotor time 23.03.34.3-2.01.9-2.1-1.1
Rest time, locomotor task time 20.50.61.9-0.00.5-0.3-1.4
Distance moved, locomotor task time 20.30.40.90.2-0.60.51.0
Vertical activity count, locomotor time 20.10.10.2-0.40.3-0.40.1
Light reinforcement 12.13.75.22.2-2.31.4-1.8
Light reinforcement 20.81.12.01.0-0.90.8-1.4
Bone: marrow area5.411.717.7-4.23.8-3.70.8
Bone: maximum diameter3.26.08.2-2.62.9-2.71.2
Bone: maximum force10.017.226.1-5.14.8-4.21.4
Bone: maximum moment10.117.527.1-5.24.8-4.21.6
Mean time between licks in bursts0.10.10.30.2-0.50.5-0.1
Mean num. licks in bursts1.51.86.0-0.2-0.11.12.5
Cd content in liver0.40.40.70.9-0.60.6-0.6
Co content in liver0.40.40.80.9-0.10.1-0.9
Cu content in liver0.81.01.5-0.61.2-1.0-1.0
Fe content in liver0.20.20.80.9-0.30.3-0.0
K content in liver0.90.82.4-0.40.7-0.6-1.5
Mg content in liver0.20.20.6-0.00.0-0.0-0.8
Mn content in liver0.20.20.8-0.30.1-0.2-0.9
Na content in liver0.30.31.10.4-0.0-0.1-1.0
Rb content in liver0.60.72.30.8-0.3-0.0-1.5
Se content in liver0.40.50.80.9-0.70.8-0.3
Sr content in liver0.50.50.9-0.50.8-1.0-0.0
Zn content in liver1.21.32.41.6-1.10.6-1.2
Bone: minimum diameter7.013.116.9-4.14.1-4.01.8
Time in familiar zone, hab. session 10.60.60.90.6-0.60.90.9
Time in novel zone, hab. session 11.01.02.2-0.50.6-1.1-1.5
Total zone transitions, hab. session 11.01.44.60.7-0.70.5-2.1
Total locomotion distance, hab. session 10.10.20.6-0.2-0.10.2-0.8
Locomotion velocity, hab. session 10.10.20.6-0.3-0.00.1-0.8
Time in familiar zone, hab. session 20.40.51.3-0.60.4-0.01.1
Time in novel zone, hab. session 21.01.03.40.6-0.5-0.3-1.8
Total zone transitions, hab. session 20.20.30.60.6-0.50.8-0.2
Total locomotion distance, hab. session 20.10.20.50.2-0.40.7-0.3
Locomotion velocity, hab. session 20.10.10.30.0-0.20.5-0.3
Novel to familiar place preference ratio1.41.52.8-1.21.3-1.7-0.2
Novelty place preference1.11.12.2-1.01.0-1.5-0.4
Time in novel zone, NPP test1.01.02.1-0.90.9-1.5-0.5
Total zone transitions, NPP test0.91.32.31.3-1.21.5-0.0
Total locomotion distance, NPP test1.41.93.11.4-1.61.8-0.3
Locomotion velocity, NPP test0.81.12.01.0-1.11.4-0.1
Intraocular pressure5.67.810.73.2-3.32.9-1.2
Delta distance traveled before/after self-admin0.60.72.5-0.40.20.21.6
Delta ambulatory time before/after self-admin0.10.20.6-0.20.10.10.8
Parametrial fat weight1.63.04.72.2-1.91.9-0.5
Pavlov. Cond. lever latency0.10.10.3-0.3-0.20.0-0.5
Pavlov. Cond. magazine entry latency0.50.72.5-0.10.00.41.6
Pavlov. Cond. change in total contacts0.30.41.3-0.10.4-0.21.1
Pavlov. Cond. index score0.10.20.3-0.10.6-0.40.4
Pavlov. Cond. latency score0.10.10.3-0.10.5-0.30.4
Pavlov. Cond. lever contacts0.20.30.60.8-0.30.40.5
Pavlov. Cond. magazine entry number0.20.31.0-0.2-0.1-0.2-1.0
Pavlov. Cond. intertrial magazine entries0.30.40.70.6-0.70.80.3
Pavlov. Cond. lever-magazine prob. diff.0.30.40.8-0.40.9-0.60.5
Pavlov. Cond. response bias0.40.51.60.3-0.00.41.3
Pavlov. Cond. lever latency0.00.00.0-0.20.00.00.2
Pavlov. Cond. magazine entry latency1.01.11.5-1.20.9-0.81.2
Pavlov. Cond. change in total contacts1.11.62.3-1.31.5-1.11.0
Pavlov. Cond. index score0.40.50.6-0.70.8-0.70.7
Pavlov. Cond. latency score0.50.60.7-0.80.8-0.70.8
Pavlov. Cond. lever contacts0.10.10.20.4-0.30.3-0.0
Pavlov. Cond. magazine entry number1.72.12.81.7-1.61.6-0.6
Pavlov. Cond. intertrial magazine entries3.54.67.22.7-2.42.40.1
Pavlov. Cond. lever-magazine prob. diff.0.70.91.0-1.01.0-1.00.8
Pavlov. Cond. response bias0.00.00.10.1-0.10.10.2
Time in closed arm before self-admin1.51.72.2-1.41.0-1.5-1.2
Time in closed arm after self-admin0.50.60.9-1.00.6-0.8-0.6
Time in open arm before self-admin1.11.21.9-0.81.0-1.2-1.4
Time in open arm after self-admin0.10.10.30.6-0.40.40.1
Bone: periosteal estimation9.118.825.5-5.15.0-4.61.9
Bone: periosteal perimeter8.113.417.7-4.14.2-3.62.4
Bone: post-yield work5.98.112.5-3.53.1-3.20.2
Progressive ratio test 1 active lever presses3.13.25.32.3-1.91.5-1.3
Progressive ratio test 1 breakpoint2.72.94.82.2-1.81.3-1.3
Progressive ratio test 1 inactive lever presses2.72.94.42.1-1.71.3-1.6
Progressive ratio test 2 active lever presses2.32.55.41.5-1.30.9-2.3
Progressive ratio test 2 breakpoint2.73.15.61.7-1.51.1-2.4
Progressive ratio test 2 inactive lever presses2.12.43.21.4-1.71.3-1.8
Incentive Sensitization - Responses0.40.40.9-0.60.4-0.2-1.0
Incentive Sensitization - Breakpoint0.30.31.1-0.40.2-0.1-1.0
Sum of active levers in priming session hrs 5-60.10.10.20.2-0.40.3-0.4
Progressive ratio0.00.00.10.1-0.20.2-0.3
Food seeking constrained by brief footshock0.91.13.70.7-0.40.3-1.9
Seeking ratio, punishment vs. effort0.30.41.50.20.1-0.2-1.2
Retroperitoneal fat weight0.31.01.81.3-0.71.30.4
Reaction time number correct1.11.63.0-1.71.0-0.91.3
Reaction time mean minus median7.19.413.23.4-3.33.61.4
Reaction time mean minus median AUC5.16.79.72.9-2.83.10.9
Reaction time num false alarms1.62.23.11.5-1.81.70.6
Reaction time num false alarms AUC2.43.35.11.8-2.12.30.7
Reaction time trials correct on left1.11.63.0-1.71.0-0.91.3
Reaction time trials on left0.91.32.4-1.60.9-0.71.3
Reaction time mean0.40.60.90.9-0.60.90.3
Reaction time mean AUC0.30.40.60.7-0.40.80.6
Median of all reaction times0.10.10.2-0.20.5-0.2-0.1
Reaction time omissions7.19.712.93.6-3.63.60.2
Reaction time false alarm rate2.33.24.32.1-2.02.10.1
Reaction time premature initiation rate4.25.79.03.0-2.92.1-1.0
Reaction time premature initiations2.02.95.02.0-2.21.6-0.2
Std. dev. reaction times4.86.79.43.0-2.83.10.8
Reaction time trials completed0.91.32.4-1.60.9-0.71.3
Reaction time trials AUC1.42.03.6-1.91.2-1.11.3
Run reversals in cocaine runway, females0.20.10.60.1-0.20.10.7
Run reversals in cocaine runway, males1.01.01.51.2-1.21.10.0
Latency to leave start box in cocaine runway0.10.10.50.1-0.1-0.1-0.7
Latency to leave start box in cocaine runway, F1.41.51.91.3-1.41.0-1.2
Latency to leave start box in cocaine runway, M1.61.51.9-1.41.4-1.10.9
Std. dev. time between licks in bursts0.80.91.11.0-1.00.6-1.1
Total sessions with >9 infusions0.40.40.90.9-0.50.3-0.8
Short access day 1 total inactive lever presses1.41.63.01.3-1.00.8-1.7
Short access day 10 total inactive lever presses0.50.61.30.6-0.70.3-1.2
Short access day 1 total infusions0.30.31.10.20.2-0.3-1.1
Short access day 10 total infusions0.50.51.11.1-0.50.90.1
Short access total infusions0.20.20.60.7-0.30.3-0.5
Short access day 1 locomotion1.81.96.90.50.1-0.6-2.6
Short access day 10 total locomotion1.01.13.90.5-0.3-0.4-2.0
Short access total locomotion1.41.55.20.7-0.3-0.3-2.3
One hour access (0.3 mA shock)0.20.20.30.5-0.30.60.3
Compulsive drug intake0.50.50.8-0.90.6-0.50.7
One hour access (shock baseline)0.10.10.20.20.10.1-0.5
Social response proportion0.30.30.50.4-0.50.70.7
Social responses6.07.711.03.3-3.33.0-0.3
Social time0.60.82.50.1-0.20.81.6
Soleus weight0.51.42.0-1.31.4-1.4-0.2
Bone: stiffness12.219.328.5-5.35.1-4.51.5
Tibialis anterior weight1.34.47.0-1.32.5-2.6-1.6
Time to tail flick, vehicle, before self-admin1.41.42.01.1-1.41.30.9
Time to tail flick, vehicle, after self-admin0.91.02.8-0.50.4-0.8-1.7
Time to tail flick, test, before self-admin0.30.30.40.5-0.60.6-0.5
Time to tail flick, test, after self-admin0.20.30.5-0.50.5-0.3-0.7
Delta time to tail flick, vehicle, before/after SA0.70.71.0-0.70.9-0.8-1.0
Delta time to tail flick, test, before/after SA0.20.20.2-0.30.5-0.5-0.2
Tibia length5.515.421.5-4.64.6-4.4-0.2
Ambulatory time before self-admin3.23.34.72.2-1.91.5-1.6
Ambulatory time after self-admin1.11.21.91.4-1.31.0-0.4
Bone: tissue strength0.60.61.2-1.10.7-0.8-0.2
Total heroin consumption2.32.74.6-1.51.5-2.1-1.3
Bone: trabecular number4.87.511.0-3.32.9-1.82.7
Bone: trabecular spacing1.82.33.51.7-1.60.7-1.9
Bone: trabecular thickness0.70.82.60.3-0.30.71.6
Bone: trabecular tissue density0.00.00.10.2-0.3-0.1-0.1
Water consumed over 24 hours0.30.41.5-0.3-0.10.11.2
Number of responses in last shaping day1.21.34.1-0.10.4-0.9-2.0