LOC102553493

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Liver gene expression LOC102553493 0.07 0.04 5.6e-07 0.04 0.05 0.05 0.05 7.9e-05 3.9e-06 2.1e-06 4.1e-06
2 Liver intron excision ratio chr15_38096688_38097670 0.03 0.02 8.1e-03 0.01 0.01 0.01 0.01 6.9e-02 8.3e-03 4.5e-02 2.9e-02
3 Adipose gene expression LOC102553493 0.07 0.04 8.9e-09 0.06 0.07 0.06 0.06 1.7e-07 3.2e-08 2.6e-07 1.7e-07
4 Brain mRNA stability LOC102553493 0.06 0.04 1.3e-03 0.02 0.01 0.01 0.01 4.4e-03 2.5e-02 8.4e-02 3.4e-02

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density1.52.53.91.1-1.61.5-2.0
Area under the delay curve5.96.310.1-3.23.2-0.22.2
BMI with tail1.13.67.5-2.72.40.41.1
BMI without tail0.10.30.60.6-0.3-0.8-0.1
Body weight0.93.98.0-2.82.01.90.3
Weight adjusted by age1.11.34.6-0.2-0.12.1-0.7
Bone surface0.91.62.40.8-1.21.4-1.6
Bone volume0.40.71.30.3-0.71.1-1.0
Breakpoint value in progressive ratio session0.60.71.1-0.81.0-0.70.7
Number of licking bursts0.70.81.0-1.01.0-0.70.9
Context. condit. distance diff. score1.41.74.40.50.3-2.11.5
Locomotion velocity, session 10.30.30.7-0.60.10.8-0.4
Locomotion distance, session 10.50.71.30.1-0.61.1-1.1
Locomotion velocity, session 20.50.51.0-1.00.41.0-0.3
Locomotion distance, session 21.62.23.90.3-1.31.8-2.0
Locomotion velocity, session 30.60.71.2-0.80.21.1-0.9
Locomotion distance, session 30.30.30.7-0.80.60.20.0
Stereotopy head waving bouts, day 30.60.71.21.0-1.1-0.0-0.9
Stereotopy head waving duration, day 30.20.20.4-0.2-0.10.6-0.7
Locomotion velocity, session 70.20.20.30.5-0.5-0.5-0.3
Locomotion distance, session 70.91.11.71.3-1.0-1.3-0.2
Stereotopy head waving bouts, day 71.01.12.0-1.30.71.4-0.4
Stereotopy head waving duration, day 71.11.32.1-1.41.01.4-0.0
Locomotion velocity, session 80.20.20.5-0.70.50.20.3
Locomotion distance, session 80.00.10.10.2-0.4-0.2-0.2
Degree of sensitization distance2.62.64.52.1-1.6-1.8-0.2
Degree of sensitization stereotypy1.11.22.2-1.51.21.00.4
Conditioned locomotion0.40.51.10.50.2-0.91.0
Cocaine response after cond. corrected4.04.57.6-0.11.6-2.82.8
Cocaine response after cond. not corrected3.43.76.2-0.21.5-2.52.5
Cocaine response before conditioning0.91.12.4-0.3-0.61.6-1.2
Saline control response0.20.20.60.2-0.4-0.0-0.7
Bone: connectivity density3.45.37.32.2-2.71.5-2.6
Bone: cortical apparent density1.51.93.3-0.21.1-1.81.7
Bone: cortical area1.42.13.3-1.51.8-0.51.5
Bone: cortical porosity1.31.42.8-1.71.21.20.1
Bone: cortical porosity0.80.91.7-1.31.10.80.2
Bone: cortical thickness2.33.86.0-2.22.5-0.81.9
Bone: cortical thickness3.94.55.7-2.02.4-1.72.4
Bone: cortical tissue density1.41.93.4-0.21.1-1.81.7
Condit. Reinf. active minus inactive responses1.11.22.9-0.5-0.31.7-1.3
Condit. Reinf. active-inactive response ratio0.20.20.40.5-0.50.1-0.6
Condit. Reinf. active responses0.91.12.7-0.8-0.01.7-1.1
Condit. Reinf. inactive responses0.30.30.9-0.50.10.9-0.4
Incentive salience index mean2.02.45.3-1.80.62.3-0.8
Condit. Reinf. lever presses2.33.05.6-2.41.22.2-0.2
Condit. Reinf. active minus inactive responses0.10.10.20.3-0.3-0.40.0
Condit. Reinf. active-inactive response ratio0.00.00.1-0.1-0.30.1-0.3
Condit. Reinf. active responses0.10.10.20.4-0.3-0.40.2
Condit. Reinf. inactive responses0.40.51.11.1-0.8-0.6-0.1
Condit. Reinf. lever presses1.52.04.1-0.1-1.12.0-1.7
Condit. Reinf. lever reinforcers received0.00.00.00.1-0.2-0.10.0
Conditioned reinforcement - actives5.15.110.93.3-2.4-1.9-0.3
Conditioned reinforcement - inactives2.22.53.41.8-1.8-0.1-1.8
Conditioned locomotion2.63.17.91.4-0.2-2.81.6
Patch foraging indifference point 0 sec0.50.71.90.1-0.61.4-0.8
Patch foraging indifference point AUC1.31.44.20.10.7-2.11.1
Delay disc. indifference point, 0s delay0.10.10.2-0.40.40.00.1
Delay disc. indifference point, 16s delay5.25.38.3-2.32.9-1.02.6
Delay disc. indifference point, 2s delay0.50.61.2-1.10.90.10.4
Delay disc. indifference point, 24s delay5.25.09.1-2.63.0-0.91.7
Delay disc. indifference point, 4s delay4.04.27.7-2.82.50.61.6
Delay disc. indifference point, 8s delay6.46.610.7-3.33.2-0.02.3
Indifference point function ln k0.71.03.1-0.80.51.80.1
Indifference point function log k0.71.03.1-0.80.51.80.1
Patch foraging total patch changes 0 sec0.30.51.9-0.2-0.11.4-0.4
Patch foraging total patch changes 12 sec0.00.00.1-0.30.00.1-0.3
Patch foraging total patch changes 18 sec0.60.81.90.7-0.0-1.40.9
Patch foraging total patch changes 24 sec0.00.00.00.2-0.1-0.0-0.1
Patch foraging total patch changes 6 sec0.00.00.00.0-0.0-0.2-0.1
Patch foraging time to switch 0 sec0.10.10.3-0.1-0.40.1-0.5
Patch foraging water rate 0 sec0.50.71.4-0.81.20.60.8
Patch foraging water rate 12 sec0.30.40.6-0.60.80.60.6
Patch foraging water rate 18 sec2.02.63.6-1.91.91.01.5
Patch foraging water rate 24 sec0.30.40.9-0.40.60.00.9
Patch foraging water rate 6 sec0.40.61.3-0.51.10.30.9
Seeking ratio, delayed vs. immediate footshock0.10.10.20.20.00.50.5
Distance traveled before self-admin0.10.10.40.6-0.30.1-0.1
Distance traveled after self-admin0.20.20.40.30.2-0.50.6
Extensor digitorum longus weight4.517.830.4-5.55.21.63.4
Bone: elastic displacement0.30.30.40.6-0.6-0.2-0.6
Bone: elastic work0.20.30.6-0.30.00.8-0.6
Bone: endosteal estimation0.20.40.70.4-0.60.8-0.7
Bone: endosteal perimeter0.51.11.61.2-1.30.8-0.9
Epididymis fat weight0.10.20.50.30.3-0.70.5
Delta time in closed arm before/after self-admin0.10.10.20.4-0.30.40.2
Delta time in open arm before/after self-admin0.20.20.40.3-0.2-0.7-0.5
Diff in mean of infusions in LGA sessions1.21.32.8-1.71.11.2-0.1
Delay discount exponential model param6.46.711.23.3-3.30.1-2.2
Extinction: sum of active levers before priming0.20.20.70.3-0.0-0.80.3
Active lever presses in extinction session 60.20.20.40.5-0.6-0.3-0.2
Bone: final force1.11.82.9-1.61.70.31.2
Bone: final moment0.81.21.9-1.41.40.70.8
Food consumed during 24 hour testing period0.30.40.70.2-0.40.8-0.8
Glucose0.10.20.5-0.70.4-0.40.2
Heart weight0.20.30.80.9-0.40.20.4
Delay discount hyperbolic model param6.06.310.93.3-3.2-0.0-2.1
Intermittent access intake day 1-15 change1.31.32.11.2-1.30.1-1.5
Intermittent access intake escalation1.11.01.41.2-1.2-0.3-1.1
Intermittent access intake escalation 20.70.71.01.0-0.9-0.4-1.0
Intermitt. access day 1 inactive lever presses1.21.32.01.2-1.40.0-1.2
Intermitt. access day 15 inactive lever presses1.41.53.30.8-1.01.1-1.8
Intermitt. access escalation Index0.20.20.50.2-0.2-0.70.1
Intermittent access day 1 total infusions0.70.82.4-0.00.3-1.50.8
Intermittent access day 15 total infusions1.11.32.41.2-1.0-1.6-0.5
Intermittent access terminal intake (last 3 days)0.91.02.40.9-0.8-1.5-0.3
Intermittent access total infusions1.11.23.80.6-0.3-2.00.7
Intermittent access day 1 locomotion0.70.71.1-0.70.8-0.71.0
Intermittent access day 15 total locomotion0.60.71.90.7-0.4-1.40.3
Intermittent access total locomotion0.30.41.0-0.30.3-1.00.6
Intermittent access standard deviation0.91.01.80.8-1.20.0-1.3
Left kidney weight1.13.09.3-1.20.33.0-1.1
Right kidney weight0.92.48.0-1.10.52.8-0.6
Cocaine induced anxiety0.20.20.70.1-0.20.8-0.4
Post-drug Anxiety2.02.24.70.1-0.82.2-1.8
Baseline Anxiety0.40.40.9-0.4-0.00.8-0.9
Tail length0.82.54.12.0-1.90.3-1.5
Length with tail0.41.33.8-0.3-0.31.9-1.1
Length without tail2.04.58.3-2.91.92.40.4
Times rat made contact with spout0.40.51.0-0.3-0.41.0-0.8
Lifetime Intake1.11.33.31.0-0.6-1.80.6
Liver weight, left1.11.73.2-1.81.51.00.6
Liver weight, right0.81.32.4-1.41.5-0.20.7
Locomotor activity1.62.57.1-1.50.72.7-0.5
Locomotor testing distance1.52.55.50.4-1.02.3-1.8
Locomotor testing rearing5.78.914.41.5-2.83.3-3.8
Locomotion in novel chamber0.30.40.6-0.80.60.7-0.1
Locomotion in novel chamber post-restriction0.20.20.5-0.70.20.5-0.4
Fecal boli incidents, locomotor time 10.10.10.2-0.40.4-0.3-0.2
Change in fecal boli incidents, locomotor task0.40.40.80.2-0.70.9-0.5
Time >=10cm from walls, locomotor time 11.81.82.70.5-1.31.6-1.6
Bouts of movement, locomotor time 10.50.60.9-0.90.30.9-0.7
Total resting periods, locomotor time 10.30.30.8-0.90.50.2-0.3
Rest time, locomotor task time 10.60.61.5-1.20.80.10.6
Distance moved, locomotor task time 10.70.71.91.4-0.9-0.4-0.1
Vertical activity count, locomotor time 10.30.31.01.0-0.3-0.4-0.1
Time >=10cm from walls, locomotor time 20.90.91.40.7-0.91.2-1.0
Bouts of movement, locomotor time 22.12.34.1-2.01.90.21.2
Total resting periods, locomotor time 22.83.05.8-2.42.20.31.2
Rest time, locomotor task time 21.82.14.7-2.21.7-0.10.8
Distance moved, locomotor task time 20.60.72.01.4-0.7-0.4-0.2
Vertical activity count, locomotor time 20.70.71.41.20.0-1.10.6
Light reinforcement 10.10.30.7-0.3-0.10.9-0.4
Light reinforcement 20.40.61.00.60.0-1.01.0
Bone: marrow area0.20.40.60.5-0.60.8-0.7
Bone: maximum diameter0.71.21.8-0.81.3-0.91.3
Bone: maximum force1.22.03.6-1.81.90.21.2
Bone: maximum moment0.81.42.4-1.61.60.60.7
Mean time between licks in bursts2.73.87.62.8-2.4-0.4-1.2
Mean num. licks in bursts1.01.21.40.9-1.11.1-1.2
Cd content in liver0.80.91.20.9-1.10.6-1.1
Co content in liver1.92.23.5-1.31.8-0.61.9
Cu content in liver0.70.92.3-0.90.11.5-0.6
Fe content in liver1.21.42.21.2-1.50.6-1.3
K content in liver0.70.71.80.30.3-1.40.9
Mg content in liver0.60.61.30.9-0.4-1.20.3
Mn content in liver0.60.71.60.9-0.3-1.30.6
Na content in liver3.03.25.7-2.31.22.4-0.6
Rb content in liver1.01.22.31.5-1.3-0.7-0.5
Se content in liver0.20.20.40.2-0.50.7-0.5
Sr content in liver2.82.54.11.5-2.00.6-1.9
Zn content in liver1.41.54.4-1.10.42.1-0.5
Bone: minimum diameter0.30.50.8-0.90.90.30.4
Time in familiar zone, hab. session 10.50.40.90.00.3-0.81.0
Time in novel zone, hab. session 10.40.40.9-1.00.70.2-0.0
Total zone transitions, hab. session 10.40.60.9-0.90.90.10.7
Total locomotion distance, hab. session 10.00.00.1-0.30.1-0.10.1
Locomotion velocity, hab. session 10.10.10.2-0.20.00.5-0.3
Time in familiar zone, hab. session 20.40.41.00.50.1-1.00.5
Time in novel zone, hab. session 20.30.30.7-0.4-0.30.8-0.7
Total zone transitions, hab. session 20.50.61.5-0.90.51.20.1
Total locomotion distance, hab. session 20.30.40.7-0.80.50.70.4
Locomotion velocity, hab. session 20.50.71.4-1.20.70.90.4
Novel to familiar place preference ratio0.40.40.90.2-0.70.2-0.9
Novelty place preference0.70.71.50.2-0.90.7-1.2
Time in novel zone, NPP test0.80.91.90.1-0.90.8-1.4
Total zone transitions, NPP test0.20.31.1-0.4-0.01.1-0.2
Total locomotion distance, NPP test1.21.72.71.1-1.60.9-1.4
Locomotion velocity, NPP test1.01.42.41.1-1.60.8-1.2
Intraocular pressure4.15.78.22.6-2.9-0.2-2.8
Delta distance traveled before/after self-admin0.20.20.5-0.70.4-0.20.1
Delta ambulatory time before/after self-admin0.10.20.3-0.40.3-0.50.2
Parametrial fat weight1.52.96.12.0-1.1-2.50.2
Pavlov. Cond. lever latency1.01.32.31.5-1.0-1.3-0.4
Pavlov. Cond. magazine entry latency0.60.71.6-1.00.51.3-0.3
Pavlov. Cond. change in total contacts2.22.34.5-2.11.41.70.2
Pavlov. Cond. index score2.43.05.2-2.31.52.10.4
Pavlov. Cond. latency score1.92.44.1-2.01.22.00.2
Pavlov. Cond. lever contacts1.72.03.8-1.81.02.00.1
Pavlov. Cond. magazine entry number1.31.62.81.7-1.0-1.60.1
Pavlov. Cond. intertrial magazine entries0.10.10.30.2-0.10.5-0.2
Pavlov. Cond. lever-magazine prob. diff.2.83.46.2-2.51.72.10.5
Pavlov. Cond. response bias2.02.54.4-2.11.51.70.6
Pavlov. Cond. lever latency1.52.05.71.00.2-2.41.1
Pavlov. Cond. magazine entry latency1.31.52.8-1.71.31.00.6
Pavlov. Cond. change in total contacts1.11.52.7-1.60.91.7-0.2
Pavlov. Cond. index score1.31.63.2-1.60.81.8-0.1
Pavlov. Cond. latency score1.31.63.6-1.50.61.9-0.3
Pavlov. Cond. lever contacts1.52.15.6-0.8-0.52.4-1.4
Pavlov. Cond. magazine entry number0.70.81.71.3-1.0-0.6-0.5
Pavlov. Cond. intertrial magazine entries5.87.512.23.5-3.5-0.2-2.4
Pavlov. Cond. lever-magazine prob. diff.1.21.62.8-1.70.91.60.1
Pavlov. Cond. response bias1.21.74.1-1.40.42.0-0.7
Time in closed arm before self-admin1.82.03.7-1.91.51.30.7
Time in closed arm after self-admin1.51.52.2-1.31.11.51.0
Time in open arm before self-admin1.21.32.01.4-1.40.1-1.0
Time in open arm after self-admin1.51.62.21.4-1.5-0.3-1.5
Bone: periosteal estimation0.10.20.3-0.40.60.00.4
Bone: periosteal perimeter0.00.00.0-0.10.20.20.1
Bone: post-yield work2.94.06.3-0.81.8-2.52.4
Progressive ratio test 1 active lever presses0.80.81.9-0.40.5-1.41.0
Progressive ratio test 1 breakpoint0.90.92.0-0.40.5-1.41.1
Progressive ratio test 1 inactive lever presses1.01.11.61.3-1.3-0.7-0.8
Progressive ratio test 2 active lever presses1.71.82.31.5-1.5-1.3-1.0
Progressive ratio test 2 breakpoint1.31.52.21.3-1.5-0.8-1.2
Progressive ratio test 2 inactive lever presses1.92.23.21.6-1.8-0.5-1.6
Incentive Sensitization - Responses4.04.05.62.2-2.4-0.1-2.4
Incentive Sensitization - Breakpoint4.54.67.02.3-2.50.1-2.6
Sum of active levers in priming session hrs 5-60.40.40.80.7-0.4-0.9-0.1
Progressive ratio0.00.10.1-0.00.10.4-0.3
Food seeking constrained by brief footshock1.21.53.1-0.10.8-1.71.5
Seeking ratio, punishment vs. effort0.70.81.5-0.40.7-1.11.2
Retroperitoneal fat weight0.31.13.01.0-0.3-1.70.6
Reaction time number correct0.60.91.31.1-1.10.5-1.0
Reaction time mean minus median0.50.61.3-0.3-0.40.9-1.1
Reaction time mean minus median AUC0.50.71.50.0-0.60.9-1.2
Reaction time num false alarms0.91.23.5-0.7-0.21.9-1.0
Reaction time num false alarms AUC0.70.92.6-0.7-0.01.6-0.7
Reaction time trials correct on left0.60.91.31.1-1.10.5-1.0
Reaction time trials on left0.81.11.61.3-1.20.5-1.1
Reaction time mean0.50.71.20.7-0.90.3-1.1
Reaction time mean AUC0.50.61.20.6-0.80.6-1.1
Median of all reaction times0.50.60.90.9-0.90.1-0.9
Reaction time omissions3.04.26.82.5-2.60.2-1.9
Reaction time false alarm rate0.60.91.8-1.30.71.10.1
Reaction time premature initiation rate0.30.40.9-1.00.7-0.00.2
Reaction time premature initiations0.00.00.1-0.30.10.1-0.3
Std. dev. reaction times0.30.51.10.4-0.80.3-1.0
Reaction time trials completed0.81.11.61.3-1.20.5-1.1
Reaction time trials AUC0.91.31.91.4-1.30.5-1.1
Run reversals in cocaine runway, females0.10.10.20.4-0.2-0.1-0.4
Run reversals in cocaine runway, males1.91.84.1-2.01.60.30.7
Latency to leave start box in cocaine runway1.01.12.01.4-1.30.0-0.8
Latency to leave start box in cocaine runway, F0.50.61.40.6-0.70.3-1.2
Latency to leave start box in cocaine runway, M1.61.53.61.9-1.5-0.0-0.5
Std. dev. time between licks in bursts1.51.82.81.7-1.70.2-1.2
Total sessions with >9 infusions0.91.01.91.4-1.2-0.9-0.1
Short access day 1 total inactive lever presses0.10.10.30.3-0.4-0.5-0.2
Short access day 10 total inactive lever presses0.70.81.30.9-0.9-0.5-1.1
Short access day 1 total infusions1.51.62.51.6-1.3-1.50.3
Short access day 10 total infusions1.01.21.9-0.60.9-1.31.4
Short access total infusions0.60.61.30.5-0.3-1.10.9
Short access day 1 locomotion0.50.51.01.0-0.5-0.30.7
Short access day 10 total locomotion0.40.41.0-1.00.50.60.0
Short access total locomotion0.10.10.1-0.2-0.20.30.3
One hour access (0.3 mA shock)0.70.82.80.5-0.1-1.70.1
Compulsive drug intake0.20.20.4-0.60.50.20.0
One hour access (shock baseline)1.11.23.01.1-0.8-1.7-0.1
Social response proportion1.71.93.21.7-1.8-0.5-1.1
Social responses1.82.34.21.9-2.1-0.2-1.2
Social time2.93.85.80.7-1.82.4-2.4
Soleus weight1.13.36.3-1.12.0-1.42.5
Bone: stiffness0.91.52.3-1.41.50.51.1
Tibialis anterior weight4.314.626.6-5.24.62.12.5
Time to tail flick, vehicle, before self-admin1.21.22.8-1.71.01.0-0.4
Time to tail flick, vehicle, after self-admin0.70.71.8-1.31.00.20.3
Time to tail flick, test, before self-admin0.80.71.90.2-0.60.8-1.4
Time to tail flick, test, after self-admin2.93.05.32.3-2.2-0.5-1.3
Delta time to tail flick, vehicle, before/after SA0.20.20.30.5-0.4-0.30.3
Delta time to tail flick, test, before/after SA1.41.32.61.6-1.3-0.90.0
Tibia length2.46.717.1-1.2-0.74.1-2.8
Ambulatory time before self-admin0.10.10.30.20.30.00.5
Ambulatory time after self-admin0.60.71.4-0.51.0-0.41.2
Bone: tissue strength1.11.11.71.1-1.20.2-1.3
Total heroin consumption0.20.20.3-0.50.5-0.20.6
Bone: trabecular number1.72.63.61.5-1.81.1-1.9
Bone: trabecular spacing3.34.35.9-1.82.4-1.62.4
Bone: trabecular thickness0.60.71.5-1.00.51.2-0.1
Bone: trabecular tissue density1.82.64.3-1.62.1-0.51.7
Water consumed over 24 hours0.60.81.5-1.10.61.2-0.2
Number of responses in last shaping day0.20.20.40.4-0.1-0.70.4