LOC102553244

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Adipose gene expression LOC102553244 0.35 0.16 0.0e+00 0.33 0.32 0.33 0.33 9.6e-38 7.1e-36 1.4e-37 1.4e-37
2 Liver mRNA stability LOC102553244 0.03 0.02 2.9e-03 0.01 0.01 0.01 0.01 1.3e-02 3.8e-02 9.2e-03 4.3e-02
3 Liver gene expression LOC102553244 0.88 0 0.0e+00 0.31 0.29 0.33 0.33 4.0e-35 2.6e-32 5.1e-37 3.1e-37

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
Bone: apparent density1.52.43.91.70.9-2.0
Area under the delay curve1.21.32.4-1.2-1.6-0.0
BMI with tail1.44.67.2-2.6-2.7-0.2
BMI without tail2.55.28.7-2.9-2.60.4
Body weight4.318.032.6-5.7-4.51.0
Weight adjusted by age2.22.44.0-2.0-1.51.1
Bone surface0.10.10.3-0.5-0.10.3
Bone volume0.10.20.4-0.3-0.4-0.6
Breakpoint value in progressive ratio session0.80.91.51.20.90.5
Number of licking bursts0.60.71.00.40.91.0
Context. condit. distance diff. score6.07.212.42.53.51.6
Locomotion velocity, session 10.20.20.50.30.7-0.3
Locomotion distance, session 10.50.61.20.80.0-1.1
Locomotion velocity, session 20.10.20.4-0.00.30.6
Locomotion distance, session 20.20.30.50.70.5-0.2
Locomotion velocity, session 30.50.51.2-0.1-0.6-1.1
Locomotion distance, session 31.11.22.11.51.0-0.5
Stereotopy head waving bouts, day 31.01.22.6-1.6-0.60.8
Stereotopy head waving duration, day 30.81.01.9-1.4-0.60.7
Locomotion velocity, session 73.13.45.62.42.1-0.3
Locomotion distance, session 72.63.36.22.51.90.1
Stereotopy head waving bouts, day 71.51.72.8-1.7-1.4-0.6
Stereotopy head waving duration, day 71.82.24.0-2.0-1.6-0.5
Locomotion velocity, session 81.62.03.5-0.21.51.9
Locomotion distance, session 83.24.77.92.12.81.4
Degree of sensitization distance1.41.43.00.50.91.7
Degree of sensitization stereotypy1.01.11.6-1.3-1.2-0.6
Conditioned locomotion0.50.61.1-1.0-0.50.6
Cocaine response after cond. corrected0.30.30.70.80.50.3
Cocaine response after cond. not corrected0.40.41.0-0.40.11.0
Cocaine response before conditioning2.73.37.0-2.7-1.41.0
Saline control response2.02.63.4-1.1-1.8-1.8
Bone: connectivity density2.13.34.92.21.9-1.3
Bone: cortical apparent density1.11.52.5-0.5-1.6-1.3
Bone: cortical area1.72.64.1-2.0-1.80.6
Bone: cortical porosity0.60.61.1-0.7-1.1-0.5
Bone: cortical porosity0.40.50.9-1.0-0.70.2
Bone: cortical thickness3.55.810.8-2.2-3.3-1.4
Bone: cortical thickness1.41.63.3-0.6-1.8-1.1
Bone: cortical tissue density0.91.22.0-0.4-1.4-1.2
Condit. Reinf. active minus inactive responses0.60.61.01.01.00.0
Condit. Reinf. active-inactive response ratio0.00.00.10.0-0.3-0.1
Condit. Reinf. active responses0.91.11.91.41.1-0.2
Condit. Reinf. inactive responses1.41.73.01.71.0-0.9
Incentive salience index mean1.72.03.21.31.81.1
Condit. Reinf. lever presses3.14.16.21.72.51.8
Condit. Reinf. active minus inactive responses0.81.01.9-1.4-1.10.2
Condit. Reinf. active-inactive response ratio1.81.93.5-1.9-1.20.9
Condit. Reinf. active responses0.00.00.10.0-0.0-0.3
Condit. Reinf. inactive responses1.31.62.51.61.2-0.9
Condit. Reinf. lever presses0.20.30.60.80.6-0.0
Condit. Reinf. lever reinforcers received0.00.00.10.20.2-0.2
Conditioned reinforcement - actives0.60.60.7-0.7-0.80.8
Conditioned reinforcement - inactives1.41.63.6-1.1-1.90.2
Conditioned locomotion0.20.20.7-0.20.00.8
Patch foraging indifference point 0 sec1.21.92.9-0.2-1.7-1.7
Patch foraging indifference point AUC1.71.93.4-1.8-1.6-0.0
Delay disc. indifference point, 0s delay0.40.40.6-0.7-0.40.8
Delay disc. indifference point, 16s delay1.71.73.9-0.5-2.0-1.0
Delay disc. indifference point, 2s delay1.61.82.8-1.7-1.11.2
Delay disc. indifference point, 24s delay0.50.51.1-0.4-1.10.2
Delay disc. indifference point, 4s delay1.51.62.5-1.6-1.30.7
Delay disc. indifference point, 8s delay0.20.20.4-0.3-0.6-0.4
Indifference point function ln k0.81.11.60.61.31.1
Indifference point function log k0.81.11.60.61.31.1
Patch foraging total patch changes 0 sec1.42.33.6-0.4-1.9-1.8
Patch foraging total patch changes 12 sec1.62.14.0-0.6-2.0-1.4
Patch foraging total patch changes 18 sec2.93.78.50.1-1.6-2.9
Patch foraging total patch changes 24 sec2.73.27.61.1-1.0-2.8
Patch foraging total patch changes 6 sec1.92.94.5-0.3-2.0-2.1
Patch foraging time to switch 0 sec0.30.40.60.7-0.2-0.8
Patch foraging water rate 0 sec0.30.40.8-0.9-0.7-0.3
Patch foraging water rate 12 sec0.50.82.10.4-0.1-1.4
Patch foraging water rate 18 sec0.10.20.3-0.6-0.4-0.1
Patch foraging water rate 24 sec1.21.62.8-1.7-1.30.7
Patch foraging water rate 6 sec0.40.61.7-0.10.2-1.3
Seeking ratio, delayed vs. immediate footshock0.40.50.9-1.0-0.60.3
Distance traveled before self-admin0.30.40.60.10.70.8
Distance traveled after self-admin0.10.10.3-0.30.30.5
Extensor digitorum longus weight0.31.13.2-0.40.21.8
Bone: elastic displacement1.11.23.2-0.2-0.7-1.8
Bone: elastic work1.82.33.2-1.6-1.8-1.0
Bone: endosteal estimation2.65.611.1-2.4-0.13.3
Bone: endosteal perimeter2.45.012.6-0.51.53.5
Epididymis fat weight4.19.517.1-1.3-4.1-3.1
Delta time in closed arm before/after self-admin0.10.10.2-0.4-0.40.0
Delta time in open arm before/after self-admin0.10.10.20.0-0.5-0.4
Diff in mean of infusions in LGA sessions2.83.06.42.51.6-0.3
Delay discount exponential model param1.21.22.31.11.5-0.0
Extinction: sum of active levers before priming0.30.30.90.90.10.2
Active lever presses in extinction session 60.40.40.90.4-0.1-1.0
Bone: final force4.77.612.1-3.3-3.5-0.0
Bone: final moment4.26.910.7-3.2-3.3-0.1
Food consumed during 24 hour testing period0.40.51.2-1.1-0.20.5
Glucose5.07.516.50.52.44.1
Heart weight0.10.20.4-0.5-0.20.6
Delay discount hyperbolic model param1.21.22.01.31.4-0.2
Intermittent access intake day 1-15 change0.80.81.5-0.8-0.6-1.2
Intermittent access intake escalation0.20.20.4-0.50.0-0.6
Intermittent access intake escalation 20.50.51.0-0.01.00.7
Intermitt. access day 1 inactive lever presses1.11.23.2-0.50.11.8
Intermitt. access day 15 inactive lever presses2.22.44.0-2.0-1.70.7
Intermitt. access escalation Index2.01.73.21.81.40.2
Intermittent access day 1 total infusions0.20.20.60.80.0-0.3
Intermittent access day 15 total infusions0.20.30.70.20.1-0.8
Intermittent access terminal intake (last 3 days)0.10.10.1-0.2-0.4-0.3
Intermittent access total infusions0.10.10.20.1-0.2-0.4
Intermittent access day 1 locomotion0.20.20.30.50.10.4
Intermittent access day 15 total locomotion0.30.30.8-0.9-0.20.2
Intermittent access total locomotion0.20.20.4-0.7-0.40.0
Intermittent access standard deviation1.81.93.0-1.6-1.7-0.6
Left kidney weight2.77.613.6-3.7-3.00.2
Right kidney weight2.46.712.9-3.6-2.41.3
Cocaine induced anxiety2.22.64.71.72.20.4
Post-drug Anxiety1.21.32.00.91.41.1
Baseline Anxiety0.30.30.5-0.2-0.60.7
Tail length2.88.617.1-4.1-1.72.4
Length with tail2.79.719.6-4.4-2.41.9
Length without tail2.14.78.5-2.9-2.01.2
Times rat made contact with spout2.12.45.31.40.2-2.3
Lifetime Intake0.00.00.10.0-0.30.2
Liver weight, left0.30.50.8-0.9-0.30.7
Liver weight, right2.64.36.7-2.6-0.82.4
Locomotor activity0.81.22.3-1.50.11.1
Locomotor testing distance0.20.30.6-0.60.10.7
Locomotor testing rearing0.30.40.9-1.0-0.20.5
Locomotion in novel chamber0.40.50.9-0.9-0.9-0.0
Locomotion in novel chamber post-restriction0.30.40.6-0.8-0.7-0.1
Fecal boli incidents, locomotor time 10.50.61.00.91.00.0
Change in fecal boli incidents, locomotor task1.01.02.3-0.7-0.51.5
Time >=10cm from walls, locomotor time 10.80.81.6-0.90.01.2
Bouts of movement, locomotor time 11.11.11.61.21.3-0.6
Total resting periods, locomotor time 10.60.60.91.00.9-0.4
Rest time, locomotor task time 10.20.20.5-0.20.70.3
Distance moved, locomotor task time 10.60.71.3-0.8-1.1-0.0
Vertical activity count, locomotor time 10.70.71.0-0.9-1.0-0.6
Time >=10cm from walls, locomotor time 20.80.82.0-0.70.21.4
Bouts of movement, locomotor time 20.30.31.0-1.00.10.0
Total resting periods, locomotor time 20.20.30.4-0.70.50.3
Rest time, locomotor task time 21.11.22.60.21.61.0
Distance moved, locomotor task time 21.01.12.5-0.8-1.6-0.4
Vertical activity count, locomotor time 20.20.20.5-0.2-0.7-0.2
Light reinforcement 10.20.30.6-0.0-0.5-0.8
Light reinforcement 20.30.40.8-0.9-0.4-0.3
Bone: marrow area2.55.510.7-2.4-0.13.3
Bone: maximum diameter1.32.45.8-1.10.32.4
Bone: maximum force3.96.710.2-3.1-3.2-0.3
Bone: maximum moment3.56.19.3-3.0-3.0-0.2
Mean time between licks in bursts1.82.55.50.01.42.3
Mean num. licks in bursts1.72.05.30.3-0.8-2.3
Cd content in liver0.91.01.3-0.6-1.1-1.2
Co content in liver1.41.63.4-1.1-1.8-0.5
Cu content in liver2.42.94.62.11.1-1.7
Fe content in liver0.91.11.6-0.6-1.1-1.3
K content in liver0.30.30.60.40.30.8
Mg content in liver3.63.74.81.52.12.2
Mn content in liver4.44.99.00.82.33.0
Na content in liver0.10.10.2-0.2-0.50.3
Rb content in liver0.60.81.31.21.0-0.2
Se content in liver3.44.27.90.82.02.8
Sr content in liver1.31.23.0-0.8-0.31.7
Zn content in liver0.91.02.80.00.21.7
Bone: minimum diameter2.03.89.7-1.20.43.1
Time in familiar zone, hab. session 12.22.14.02.00.7-1.3
Time in novel zone, hab. session 10.80.82.0-1.4-0.30.5
Total zone transitions, hab. session 10.40.51.01.00.80.0
Total locomotion distance, hab. session 10.30.40.91.00.50.1
Locomotion velocity, hab. session 10.10.20.40.60.10.3
Time in familiar zone, hab. session 20.10.10.40.60.1-0.1
Time in novel zone, hab. session 20.60.61.3-0.6-0.5-1.1
Total zone transitions, hab. session 20.00.00.10.1-0.3-0.0
Total locomotion distance, hab. session 20.60.81.81.30.8-0.2
Locomotion velocity, hab. session 20.70.91.91.40.90.1
Novel to familiar place preference ratio0.20.20.4-0.0-0.3-0.6
Novelty place preference0.20.20.3-0.3-0.5-0.5
Time in novel zone, NPP test0.20.20.3-0.4-0.5-0.5
Total zone transitions, NPP test0.81.21.91.41.1-0.5
Total locomotion distance, NPP test0.81.12.01.40.8-0.9
Locomotion velocity, NPP test1.41.93.41.91.1-1.1
Intraocular pressure1.11.51.81.21.1-1.3
Delta distance traveled before/after self-admin0.70.71.2-0.9-1.1-0.4
Delta ambulatory time before/after self-admin0.20.20.3-0.6-0.50.0
Parametrial fat weight1.83.65.3-2.3-2.0-1.2
Pavlov. Cond. lever latency2.73.46.4-0.7-1.8-2.5
Pavlov. Cond. magazine entry latency2.22.84.00.91.92.0
Pavlov. Cond. change in total contacts2.42.56.9-0.80.22.6
Pavlov. Cond. index score3.74.78.90.92.13.0
Pavlov. Cond. latency score3.24.18.80.61.83.0
Pavlov. Cond. lever contacts2.83.38.10.21.32.8
Pavlov. Cond. magazine entry number2.73.44.3-1.3-2.0-2.1
Pavlov. Cond. intertrial magazine entries2.53.18.50.8-0.2-2.9
Pavlov. Cond. lever-magazine prob. diff.3.84.88.51.02.22.9
Pavlov. Cond. response bias3.54.36.71.12.22.6
Pavlov. Cond. lever latency0.20.20.3-0.6-0.30.5
Pavlov. Cond. magazine entry latency0.70.81.0-1.0-0.51.0
Pavlov. Cond. change in total contacts0.40.50.6-0.6-0.8-0.7
Pavlov. Cond. index score0.00.00.0-0.2-0.10.1
Pavlov. Cond. latency score0.10.10.1-0.4-0.40.2
Pavlov. Cond. lever contacts0.40.61.60.3-0.2-1.3
Pavlov. Cond. magazine entry number0.30.40.60.80.6-0.2
Pavlov. Cond. intertrial magazine entries1.82.34.11.32.01.1
Pavlov. Cond. lever-magazine prob. diff.0.00.00.0-0.2-0.10.1
Pavlov. Cond. response bias0.10.20.50.2-0.0-0.7
Time in closed arm before self-admin0.10.10.1-0.00.40.4
Time in closed arm after self-admin0.70.71.1-0.8-1.0-0.5
Time in open arm before self-admin0.20.20.40.60.3-0.2
Time in open arm after self-admin0.40.41.21.10.3-0.0
Bone: periosteal estimation2.34.87.1-2.7-1.22.4
Bone: periosteal perimeter1.62.75.7-1.6-0.32.4
Bone: post-yield work0.50.71.2-0.11.01.1
Progressive ratio test 1 active lever presses0.10.10.20.5-0.10.2
Progressive ratio test 1 breakpoint0.10.10.20.5-0.20.3
Progressive ratio test 1 inactive lever presses0.10.10.30.1-0.6-0.3
Progressive ratio test 2 active lever presses0.50.50.80.90.6-0.7
Progressive ratio test 2 breakpoint0.91.01.41.20.8-0.9
Progressive ratio test 2 inactive lever presses0.30.40.5-0.7-0.70.3
Incentive Sensitization - Responses0.70.70.80.80.9-0.7
Incentive Sensitization - Breakpoint0.80.91.20.91.1-0.8
Sum of active levers in priming session hrs 5-60.40.40.70.80.60.2
Progressive ratio4.04.66.9-2.6-2.5-0.9
Food seeking constrained by brief footshock0.00.00.1-0.0-0.3-0.2
Seeking ratio, punishment vs. effort3.13.85.82.42.20.9
Retroperitoneal fat weight0.31.12.1-1.1-1.40.0
Reaction time number correct0.50.71.4-0.1-0.9-1.2
Reaction time mean minus median0.81.12.20.11.51.0
Reaction time mean minus median AUC0.71.02.10.31.40.9
Reaction time num false alarms0.30.50.9-0.9-0.30.7
Reaction time num false alarms AUC0.60.81.4-1.2-0.60.9
Reaction time trials correct on left0.50.71.4-0.1-0.9-1.2
Reaction time trials on left0.50.61.2-0.2-0.9-1.1
Reaction time mean1.42.03.40.61.91.5
Reaction time mean AUC1.31.83.30.61.81.3
Median of all reaction times1.21.62.60.61.61.4
Reaction time omissions1.01.32.10.31.41.3
Reaction time false alarm rate0.71.02.3-0.90.01.5
Reaction time premature initiation rate1.21.52.3-1.5-1.30.7
Reaction time premature initiations1.52.13.4-1.7-1.90.1
Std. dev. reaction times1.01.42.10.01.41.4
Reaction time trials completed0.50.61.2-0.2-0.9-1.1
Reaction time trials AUC0.40.61.2-0.1-0.8-1.1
Run reversals in cocaine runway, females0.90.91.8-0.1-0.9-1.3
Run reversals in cocaine runway, males0.90.91.6-1.3-0.11.0
Latency to leave start box in cocaine runway0.40.41.0-0.3-0.31.0
Latency to leave start box in cocaine runway, F0.30.30.70.40.50.8
Latency to leave start box in cocaine runway, M1.11.11.9-1.1-1.40.1
Std. dev. time between licks in bursts2.32.76.8-0.31.12.6
Total sessions with >9 infusions0.20.30.5-0.1-0.50.7
Short access day 1 total inactive lever presses1.31.54.0-0.40.52.0
Short access day 10 total inactive lever presses0.10.10.1-0.10.40.4
Short access day 1 total infusions0.50.61.20.60.41.1
Short access day 10 total infusions0.10.10.1-0.2-0.30.4
Short access total infusions0.50.51.1-0.3-0.61.1
Short access day 1 locomotion2.72.94.82.21.80.8
Short access day 10 total locomotion1.41.64.5-0.10.42.1
Short access total locomotion0.80.82.20.50.31.5
One hour access (0.3 mA shock)0.30.30.80.90.4-0.2
Compulsive drug intake2.22.23.11.71.80.8
One hour access (shock baseline)0.40.50.7-0.8-0.8-0.4
Social response proportion0.80.92.7-0.1-0.11.6
Social responses0.60.81.8-0.4-0.51.3
Social time1.21.63.9-0.40.82.0
Soleus weight2.05.815.3-1.01.03.9
Bone: stiffness1.11.73.0-1.4-1.7-0.2
Tibialis anterior weight0.10.40.7-0.1-0.8-0.8
Time to tail flick, vehicle, before self-admin0.10.10.30.10.60.1
Time to tail flick, vehicle, after self-admin1.11.12.20.71.50.8
Time to tail flick, test, before self-admin0.30.30.7-0.0-0.6-0.8
Time to tail flick, test, after self-admin1.21.31.81.01.3-1.0
Delta time to tail flick, vehicle, before/after SA0.60.61.20.81.1-0.3
Delta time to tail flick, test, before/after SA1.31.11.81.01.4-0.8
Tibia length2.26.29.3-2.8-1.23.1
Ambulatory time before self-admin0.00.00.0-0.1-0.0-0.1
Ambulatory time after self-admin0.00.00.1-0.20.10.3
Bone: tissue strength3.73.64.9-2.2-2.2-1.0
Total heroin consumption0.10.10.40.00.0-0.6
Bone: trabecular number2.13.36.31.70.8-2.5
Bone: trabecular spacing3.84.96.5-2.6-1.82.3
Bone: trabecular thickness1.11.31.71.30.8-1.2
Bone: trabecular tissue density1.62.33.1-1.7-1.61.0
Water consumed over 24 hours0.10.10.3-0.10.20.5
Number of responses in last shaping day1.01.02.9-0.4-0.21.7