LOC102551259

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Liver gene expression LOC102551259 0.17 0.09 2.6e-10 0.04 0.07 0.07 0.07 2.6e-05 3.6e-08 1.2e-08 6.6e-08
2 Liver mRNA stability LOC102551259 0.15 0.07 6.0e-10 0.06 0.07 0.07 0.07 4.4e-07 1.7e-08 1.7e-08 1.4e-08
3 Adipose gene expression LOC102551259 0.03 0.02 9.5e-05 0.03 0.03 0.02 0.03 2.0e-04 1.8e-04 1.4e-03 2.3e-04

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
Bone: apparent density0.71.12.2-1.50.80.7
Area under the delay curve0.10.10.10.3-0.2-0.2
BMI with tail0.92.83.7-1.61.41.9
BMI without tail3.57.29.2-3.02.72.2
Body weight1.25.27.7-2.82.61.2
Weight adjusted by age0.20.20.30.6-0.40.5
Bone surface1.01.72.9-1.71.5-0.1
Bone volume1.32.14.0-2.01.40.6
Breakpoint value in progressive ratio session0.20.20.30.3-0.6-0.4
Number of licking bursts3.94.58.83.0-1.5-1.6
Context. condit. distance diff. score0.30.30.40.6-0.7-0.4
Locomotion velocity, session 10.10.10.1-0.30.3-0.1
Locomotion distance, session 10.50.61.4-1.20.50.5
Locomotion velocity, session 20.10.10.1-0.30.4-0.3
Locomotion distance, session 21.72.44.4-2.11.50.6
Locomotion velocity, session 30.40.50.8-0.90.8-0.0
Locomotion distance, session 30.90.91.8-0.51.3-0.8
Stereotopy head waving bouts, day 30.20.30.50.5-0.7-0.1
Stereotopy head waving duration, day 30.20.20.40.4-0.60.1
Locomotion velocity, session 72.62.96.1-1.02.5-1.2
Locomotion distance, session 70.81.11.90.70.9-1.4
Stereotopy head waving bouts, day 71.11.22.6-1.61.00.3
Stereotopy head waving duration, day 72.22.75.1-2.31.60.8
Locomotion velocity, session 80.20.20.4-0.40.7-0.1
Locomotion distance, session 80.20.20.5-0.70.5-0.0
Degree of sensitization distance1.51.52.41.3-1.50.6
Degree of sensitization stereotypy3.23.56.8-2.61.90.4
Conditioned locomotion1.01.11.7-0.61.1-1.3
Cocaine response after cond. corrected0.40.40.91.0-0.5-0.1
Cocaine response after cond. not corrected0.00.00.10.30.2-0.1
Cocaine response before conditioning1.92.33.7-1.81.9-0.2
Saline control response0.30.30.80.1-0.90.4
Bone: connectivity density0.40.61.0-1.00.80.2
Bone: cortical apparent density0.60.81.81.3-0.8-0.2
Bone: cortical area2.33.56.4-2.51.81.0
Bone: cortical porosity0.91.02.0-1.41.00.1
Bone: cortical porosity0.40.51.0-1.00.6-0.2
Bone: cortical thickness0.91.42.1-1.50.91.2
Bone: cortical thickness0.20.30.8-0.1-0.20.9
Bone: cortical tissue density0.60.81.81.3-0.8-0.3
Condit. Reinf. active minus inactive responses0.10.10.30.5-0.2-0.2
Condit. Reinf. active-inactive response ratio0.10.10.10.20.4-0.2
Condit. Reinf. active responses0.50.60.91.0-0.80.3
Condit. Reinf. inactive responses1.01.21.81.1-1.30.7
Incentive salience index mean0.10.10.20.20.4-0.4
Condit. Reinf. lever presses0.30.40.70.70.3-0.8
Condit. Reinf. active minus inactive responses1.31.62.80.4-1.41.7
Condit. Reinf. active-inactive response ratio2.82.94.81.2-2.21.6
Condit. Reinf. active responses0.40.51.20.0-0.61.1
Condit. Reinf. inactive responses1.92.34.3-1.52.1-0.6
Condit. Reinf. lever presses0.60.81.1-1.10.51.0
Condit. Reinf. lever reinforcers received0.30.40.70.2-0.60.8
Conditioned reinforcement - actives1.01.02.3-1.50.50.7
Conditioned reinforcement - inactives0.40.40.4-0.6-0.60.7
Conditioned locomotion0.81.01.5-1.21.0-0.7
Patch foraging indifference point 0 sec1.01.63.1-1.8-0.11.3
Patch foraging indifference point AUC1.21.43.20.3-1.01.8
Delay disc. indifference point, 0s delay0.70.81.2-1.11.10.0
Delay disc. indifference point, 16s delay2.72.73.92.0-1.9-0.6
Delay disc. indifference point, 2s delay1.71.93.0-1.71.31.0
Delay disc. indifference point, 24s delay1.41.42.01.4-1.1-0.9
Delay disc. indifference point, 4s delay0.10.20.30.1-0.30.6
Delay disc. indifference point, 8s delay0.30.30.5-0.60.7-0.4
Indifference point function ln k1.11.53.0-1.71.20.1
Indifference point function log k1.11.53.0-1.71.20.1
Patch foraging total patch changes 0 sec1.22.03.5-1.9-0.21.6
Patch foraging total patch changes 12 sec0.30.30.6-0.5-0.30.8
Patch foraging total patch changes 18 sec0.30.40.7-0.1-0.90.7
Patch foraging total patch changes 24 sec0.60.81.6-0.6-0.51.3
Patch foraging total patch changes 6 sec2.13.25.00.3-2.22.1
Patch foraging time to switch 0 sec2.53.99.41.30.6-3.1
Patch foraging water rate 0 sec0.20.30.5-0.70.10.7
Patch foraging water rate 12 sec0.81.22.1-1.2-0.01.5
Patch foraging water rate 18 sec0.20.30.4-0.70.20.6
Patch foraging water rate 24 sec0.10.20.4-0.30.20.6
Patch foraging water rate 6 sec0.81.22.40.0-1.11.5
Seeking ratio, delayed vs. immediate footshock0.00.00.10.3-0.1-0.0
Distance traveled before self-admin0.10.10.2-0.40.20.1
Distance traveled after self-admin0.40.40.6-0.70.80.2
Extensor digitorum longus weight3.614.023.0-4.84.40.1
Bone: elastic displacement0.30.40.90.3-1.00.3
Bone: elastic work0.20.30.6-0.80.10.4
Bone: endosteal estimation1.53.46.9-2.61.80.2
Bone: endosteal perimeter1.12.43.6-1.91.8-0.4
Epididymis fat weight0.51.12.8-0.8-0.11.7
Delta time in closed arm before/after self-admin0.60.61.60.30.4-1.3
Delta time in open arm before/after self-admin2.82.75.6-1.5-0.42.4
Diff in mean of infusions in LGA sessions2.32.54.20.9-2.01.6
Delay discount exponential model param0.10.10.1-0.40.20.3
Extinction: sum of active levers before priming0.40.40.70.8-0.7-0.1
Active lever presses in extinction session 60.20.20.4-0.1-0.50.6
Bone: final force4.16.613.1-3.61.81.8
Bone: final moment3.55.711.4-3.41.51.8
Food consumed during 24 hour testing period1.61.93.8-2.00.71.2
Glucose0.30.51.10.0-0.71.0
Heart weight1.01.32.3-0.0-1.31.5
Delay discount hyperbolic model param0.00.00.1-0.20.10.1
Intermittent access intake day 1-15 change0.20.20.30.6-0.4-0.1
Intermittent access intake escalation0.30.30.50.7-0.60.1
Intermittent access intake escalation 21.21.22.41.5-1.10.0
Intermitt. access day 1 inactive lever presses0.10.10.20.4-0.50.2
Intermitt. access day 15 inactive lever presses1.41.53.3-1.81.10.2
Intermitt. access escalation Index1.00.92.1-0.7-0.21.5
Intermittent access day 1 total infusions1.11.32.6-1.60.90.5
Intermittent access day 15 total infusions0.30.40.6-0.80.10.7
Intermittent access terminal intake (last 3 days)0.40.40.7-0.7-0.00.8
Intermittent access total infusions1.31.53.1-1.80.70.9
Intermittent access day 1 locomotion0.90.91.6-1.1-0.01.2
Intermittent access day 15 total locomotion1.92.03.00.3-1.71.7
Intermittent access total locomotion1.82.04.8-0.8-0.82.2
Intermittent access standard deviation0.20.20.40.1-0.30.6
Left kidney weight2.77.613.5-3.72.12.2
Right kidney weight2.46.711.2-3.32.31.9
Cocaine induced anxiety1.71.92.51.5-1.61.0
Post-drug Anxiety2.73.14.32.0-2.11.0
Baseline Anxiety0.20.30.6-0.80.40.1
Tail length1.54.56.6-2.62.31.2
Length with tail0.51.93.0-1.71.7-0.0
Length without tail0.30.82.30.00.0-1.5
Times rat made contact with spout2.02.33.5-1.91.80.0
Lifetime Intake2.02.34.8-2.21.10.9
Liver weight, left0.00.10.10.30.10.3
Liver weight, right0.20.30.70.20.8-0.4
Locomotor activity0.10.10.3-0.5-0.1-0.2
Locomotor testing distance0.20.40.5-0.7-0.40.7
Locomotor testing rearing0.10.20.40.5-0.60.0
Locomotion in novel chamber0.70.92.30.2-0.71.5
Locomotion in novel chamber post-restriction3.03.65.91.8-2.41.3
Fecal boli incidents, locomotor time 11.01.12.30.60.8-1.5
Change in fecal boli incidents, locomotor task0.90.82.1-0.5-0.51.4
Time >=10cm from walls, locomotor time 12.32.45.3-2.31.30.4
Bouts of movement, locomotor time 12.83.05.92.4-1.8-0.3
Total resting periods, locomotor time 12.52.85.52.3-1.4-0.9
Rest time, locomotor task time 12.22.45.21.30.5-2.3
Distance moved, locomotor task time 12.62.95.8-1.6-0.52.4
Vertical activity count, locomotor time 13.73.98.3-1.8-0.22.9
Time >=10cm from walls, locomotor time 25.76.012.6-3.52.30.1
Bouts of movement, locomotor time 20.40.50.6-0.50.8-0.7
Total resting periods, locomotor time 20.60.60.9-0.61.0-0.7
Rest time, locomotor task time 20.10.10.10.20.3-0.2
Distance moved, locomotor task time 20.70.81.8-1.30.20.7
Vertical activity count, locomotor time 21.01.02.1-0.9-0.31.5
Light reinforcement 10.20.40.60.6-0.80.3
Light reinforcement 20.20.30.5-0.3-0.50.7
Bone: marrow area1.43.06.1-2.51.70.1
Bone: maximum diameter1.32.44.3-2.11.50.8
Bone: maximum force3.25.511.1-3.31.81.5
Bone: maximum moment2.74.79.7-3.11.51.5
Mean time between licks in bursts0.00.00.10.30.0-0.0
Mean num. licks in bursts6.37.614.6-3.82.41.6
Cd content in liver2.52.74.02.0-2.0-0.5
Co content in liver1.11.32.30.8-1.51.0
Cu content in liver1.01.22.6-0.5-0.81.6
Fe content in liver1.41.62.41.5-1.50.6
K content in liver0.30.30.5-0.1-0.50.7
Mg content in liver0.10.10.20.2-0.50.0
Mn content in liver0.40.50.8-0.60.9-0.5
Na content in liver4.14.47.9-2.82.3-0.0
Rb content in liver2.22.84.51.0-2.11.6
Se content in liver0.10.10.3-0.0-0.20.5
Sr content in liver0.30.30.5-0.70.60.2
Zn content in liver2.42.76.2-2.51.10.8
Bone: minimum diameter2.24.18.1-2.92.00.2
Time in familiar zone, hab. session 12.42.23.21.4-1.81.2
Time in novel zone, hab. session 15.65.58.2-2.12.9-1.9
Total zone transitions, hab. session 11.82.53.4-1.90.71.9
Total locomotion distance, hab. session 13.85.49.3-3.01.02.4
Locomotion velocity, hab. session 13.04.26.7-2.40.32.6
Time in familiar zone, hab. session 20.30.30.7-0.2-0.20.8
Time in novel zone, hab. session 20.00.00.0-0.00.1-0.2
Total zone transitions, hab. session 22.12.75.3-2.30.71.5
Total locomotion distance, hab. session 22.23.05.7-2.40.71.7
Locomotion velocity, hab. session 22.63.56.7-2.60.81.8
Novel to familiar place preference ratio0.60.71.20.8-1.10.4
Novelty place preference0.60.61.00.9-1.00.2
Time in novel zone, NPP test0.70.71.20.9-1.10.4
Total zone transitions, NPP test1.42.03.3-1.81.11.2
Total locomotion distance, NPP test1.21.62.4-1.50.41.5
Locomotion velocity, NPP test0.91.32.1-1.40.41.3
Intraocular pressure0.10.20.4-0.30.6-0.3
Delta distance traveled before/after self-admin0.60.71.1-1.11.00.1
Delta ambulatory time before/after self-admin0.70.81.5-1.20.90.1
Parametrial fat weight1.73.47.4-1.50.72.7
Pavlov. Cond. lever latency0.91.22.00.4-1.41.2
Pavlov. Cond. magazine entry latency1.11.52.8-1.11.7-0.6
Pavlov. Cond. change in total contacts2.22.43.6-0.11.9-1.9
Pavlov. Cond. index score1.11.42.4-0.41.6-1.2
Pavlov. Cond. latency score0.81.01.9-0.41.4-0.9
Pavlov. Cond. lever contacts1.51.83.2-0.61.8-1.3
Pavlov. Cond. magazine entry number1.51.93.20.6-1.81.5
Pavlov. Cond. intertrial magazine entries1.51.83.51.0-1.90.9
Pavlov. Cond. lever-magazine prob. diff.1.01.32.6-0.51.6-1.0
Pavlov. Cond. response bias2.32.84.5-0.82.1-1.8
Pavlov. Cond. lever latency0.60.81.41.2-0.5-0.9
Pavlov. Cond. magazine entry latency1.41.63.21.20.3-1.8
Pavlov. Cond. change in total contacts0.71.01.40.5-1.11.2
Pavlov. Cond. index score0.00.00.10.3-0.1-0.0
Pavlov. Cond. latency score0.00.00.10.30.2-0.2
Pavlov. Cond. lever contacts0.60.81.2-1.10.70.8
Pavlov. Cond. magazine entry number1.21.42.6-1.60.81.0
Pavlov. Cond. intertrial magazine entries1.21.62.3-1.51.11.2
Pavlov. Cond. lever-magazine prob. diff.0.10.10.20.40.0-0.3
Pavlov. Cond. response bias0.00.00.1-0.20.00.3
Time in closed arm before self-admin0.70.81.1-1.10.31.0
Time in closed arm after self-admin0.50.51.00.7-1.00.1
Time in open arm before self-admin2.32.55.12.3-0.9-1.3
Time in open arm after self-admin0.60.71.0-0.90.31.0
Bone: periosteal estimation2.65.310.2-3.22.30.7
Bone: periosteal perimeter1.21.93.5-1.91.50.4
Bone: post-yield work1.72.45.0-2.20.91.2
Progressive ratio test 1 active lever presses0.50.51.1-1.10.20.6
Progressive ratio test 1 breakpoint0.40.41.0-1.00.20.6
Progressive ratio test 1 inactive lever presses1.71.94.6-2.10.60.8
Progressive ratio test 2 active lever presses1.21.32.8-1.71.00.0
Progressive ratio test 2 breakpoint1.31.53.5-1.91.00.2
Progressive ratio test 2 inactive lever presses1.11.23.3-1.80.40.4
Incentive Sensitization - Responses3.03.15.3-2.31.8-0.8
Incentive Sensitization - Breakpoint3.33.46.4-2.51.9-0.6
Sum of active levers in priming session hrs 5-60.10.10.10.2-0.3-0.2
Progressive ratio0.40.40.80.2-0.90.7
Food seeking constrained by brief footshock0.80.91.61.3-1.0-0.4
Seeking ratio, punishment vs. effort0.30.40.7-0.20.8-0.6
Retroperitoneal fat weight0.51.83.70.5-1.21.9
Reaction time number correct0.91.32.71.6-0.4-1.1
Reaction time mean minus median0.40.60.9-0.9-0.20.9
Reaction time mean minus median AUC0.50.71.2-0.8-0.51.1
Reaction time num false alarms1.31.73.21.8-1.4-0.3
Reaction time num false alarms AUC0.81.22.11.4-1.1-0.4
Reaction time trials correct on left0.91.32.71.6-0.4-1.1
Reaction time trials on left0.91.32.61.6-0.4-1.0
Reaction time mean0.30.40.8-0.7-0.10.9
Reaction time mean AUC0.10.20.3-0.60.00.4
Median of all reaction times0.10.20.4-0.5-0.00.6
Reaction time omissions0.20.20.7-0.10.0-0.8
Reaction time false alarm rate0.10.20.40.4-0.60.0
Reaction time premature initiation rate1.82.54.5-1.42.1-0.9
Reaction time premature initiations1.62.23.7-0.51.9-1.6
Std. dev. reaction times0.50.71.1-1.0-0.11.0
Reaction time trials completed0.91.32.61.6-0.4-1.0
Reaction time trials AUC0.81.12.31.5-0.3-0.9
Run reversals in cocaine runway, females2.52.53.7-1.81.90.6
Run reversals in cocaine runway, males0.40.41.0-1.00.2-0.4
Latency to leave start box in cocaine runway0.40.50.9-0.1-0.70.9
Latency to leave start box in cocaine runway, F0.00.00.10.0-0.1-0.3
Latency to leave start box in cocaine runway, M1.11.02.1-0.2-0.91.5
Std. dev. time between licks in bursts0.30.30.40.3-0.60.7
Total sessions with >9 infusions5.15.711.0-3.32.40.5
Short access day 1 total inactive lever presses0.30.30.8-0.90.3-0.0
Short access day 10 total inactive lever presses0.10.20.30.4-0.6-0.1
Short access day 1 total infusions1.41.53.3-1.81.00.2
Short access day 10 total infusions2.83.15.9-2.41.90.1
Short access total infusions3.03.37.0-2.61.40.9
Short access day 1 locomotion0.60.71.5-1.20.7-0.1
Short access day 10 total locomotion1.41.53.0-1.3-0.01.7
Short access total locomotion2.12.24.0-1.6-0.12.0
One hour access (0.3 mA shock)1.51.83.7-1.2-0.11.9
Compulsive drug intake0.10.10.2-0.1-0.30.4
One hour access (shock baseline)0.50.61.00.2-1.00.9
Social response proportion0.60.71.1-0.4-1.10.8
Social responses0.30.41.30.0-1.10.1
Social time0.30.40.80.5-0.9-0.2
Soleus weight1.44.27.8-2.81.21.9
Bone: stiffness2.74.38.7-3.01.41.5
Tibialis anterior weight4.816.431.3-5.63.72.0
Time to tail flick, vehicle, before self-admin0.10.10.10.30.00.3
Time to tail flick, vehicle, after self-admin0.30.40.70.6-0.3-0.8
Time to tail flick, test, before self-admin0.90.92.0-1.40.8-0.2
Time to tail flick, test, after self-admin0.30.30.40.6-0.2-0.7
Delta time to tail flick, vehicle, before/after SA0.00.00.10.0-0.2-0.3
Delta time to tail flick, test, before/after SA0.30.30.70.9-0.2-0.0
Tibia length0.20.50.70.5-0.70.8
Ambulatory time before self-admin0.00.00.0-0.2-0.10.2
Ambulatory time after self-admin0.60.61.2-0.81.1-0.1
Bone: tissue strength0.10.10.2-0.40.2-0.3
Total heroin consumption0.00.10.1-0.0-0.1-0.4
Bone: trabecular number0.60.91.9-1.40.50.8
Bone: trabecular spacing0.50.71.10.90.1-1.1
Bone: trabecular thickness2.12.55.7-1.2-0.52.4
Bone: trabecular tissue density0.10.20.30.6-0.10.6
Water consumed over 24 hours1.41.73.40.11.2-1.9
Number of responses in last shaping day0.40.40.7-0.70.8-0.4