LOC102550729

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Brain gene expression LOC102550729 0.05 0.03 4.7e-06 0.06 0.05 0.04 0.05 4.1e-06 1.5e-05 2.0e-04 2.3e-05
2 Adipose gene expression LOC102550729 0.04 0.03 6.9e-05 0.03 0.04 0.04 0.03 1.1e-04 4.1e-05 6.3e-05 1.0e-04
3 PL gene expression LOC102550729 0.04 0.04 1.5e-03 0.01 0.01 0.02 0.01 3.8e-02 8.5e-03 4.4e-03 1.1e-02

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
Bone: apparent density0.71.22.7-1.61.00.2
Area under the delay curve1.92.03.4-1.01.3-1.8
BMI with tail20.265.493.7-9.78.5-5.5
BMI without tail15.231.444.9-6.75.8-3.9
Body weight18.477.2113.6-10.79.2-5.8
Weight adjusted by age5.25.97.9-2.82.5-1.9
Bone surface0.81.52.9-1.71.2-0.1
Bone volume2.34.06.7-2.62.1-0.8
Breakpoint value in progressive ratio session3.43.84.8-2.21.9-1.7
Number of licking bursts0.00.00.1-0.3-0.0-0.1
Context. condit. distance diff. score0.20.20.30.3-0.50.5
Locomotion velocity, session 11.21.31.41.2-1.21.1
Locomotion distance, session 11.72.23.61.9-1.41.0
Locomotion velocity, session 21.01.21.81.3-1.00.9
Locomotion distance, session 20.10.10.2-0.20.4-0.1
Locomotion velocity, session 31.92.33.31.8-1.51.1
Locomotion distance, session 31.11.21.41.2-1.11.0
Stereotopy head waving bouts, day 30.10.10.30.5-0.1-0.2
Stereotopy head waving duration, day 30.20.30.60.30.2-0.8
Locomotion velocity, session 70.20.20.20.4-0.40.5
Locomotion distance, session 70.10.10.4-0.2-0.00.6
Stereotopy head waving bouts, day 70.50.51.4-0.30.4-1.2
Stereotopy head waving duration, day 70.40.51.4-0.10.2-1.2
Locomotion velocity, session 82.83.43.71.8-1.91.8
Locomotion distance, session 81.52.13.01.2-1.41.7
Degree of sensitization distance0.80.81.5-1.20.9-0.3
Degree of sensitization stereotypy1.21.32.3-0.90.8-1.5
Conditioned locomotion0.00.00.10.10.0-0.2
Cocaine response after cond. corrected3.23.64.72.2-1.71.8
Cocaine response after cond. not corrected4.75.26.02.5-2.22.2
Cocaine response before conditioning0.20.20.30.1-0.60.6
Saline control response0.20.20.50.10.4-0.7
Bone: connectivity density0.30.41.10.1-0.41.0
Bone: cortical apparent density5.47.210.53.2-2.81.8
Bone: cortical area9.213.919.9-4.53.9-2.6
Bone: cortical porosity0.60.71.1-1.10.8-0.6
Bone: cortical porosity1.61.82.6-1.61.3-1.0
Bone: cortical thickness5.89.512.5-3.53.3-2.3
Bone: cortical thickness7.58.710.1-2.93.2-2.7
Bone: cortical tissue density6.38.311.93.4-3.02.0
Condit. Reinf. active minus inactive responses4.04.56.01.7-2.12.5
Condit. Reinf. active-inactive response ratio2.83.03.41.5-1.81.8
Condit. Reinf. active responses1.41.73.70.5-1.11.9
Condit. Reinf. inactive responses0.40.51.0-1.00.50.5
Incentive salience index mean3.13.85.71.5-1.82.4
Condit. Reinf. lever presses1.52.03.21.1-1.21.8
Condit. Reinf. active minus inactive responses1.51.83.5-1.91.2-0.8
Condit. Reinf. active-inactive response ratio3.33.44.8-2.21.7-1.6
Condit. Reinf. active responses1.42.04.0-2.01.2-0.8
Condit. Reinf. inactive responses0.30.30.8-0.90.4-0.1
Condit. Reinf. lever presses1.01.32.3-1.51.1-0.6
Condit. Reinf. lever reinforcers received0.60.82.1-1.40.7-0.2
Conditioned reinforcement - actives5.05.05.72.4-2.32.0
Conditioned reinforcement - inactives0.50.60.80.9-0.80.6
Conditioned locomotion4.75.65.82.4-2.32.4
Patch foraging indifference point 0 sec4.67.58.8-3.02.9-2.3
Patch foraging indifference point AUC1.01.21.6-0.91.0-1.3
Delay disc. indifference point, 0s delay1.11.21.4-0.91.1-1.2
Delay disc. indifference point, 16s delay1.01.01.8-0.70.8-1.4
Delay disc. indifference point, 2s delay0.40.51.1-0.10.5-1.0
Delay disc. indifference point, 24s delay1.41.42.2-0.91.1-1.5
Delay disc. indifference point, 4s delay1.11.12.1-0.60.9-1.4
Delay disc. indifference point, 8s delay0.70.71.6-0.30.7-1.3
Indifference point function ln k0.00.10.1-0.20.10.3
Indifference point function log k0.00.10.1-0.20.10.3
Patch foraging total patch changes 0 sec5.89.411.0-3.33.2-2.6
Patch foraging total patch changes 12 sec3.84.96.2-2.52.3-1.8
Patch foraging total patch changes 18 sec1.82.42.7-1.71.6-1.3
Patch foraging total patch changes 24 sec0.81.01.1-0.91.0-1.1
Patch foraging total patch changes 6 sec4.76.97.5-2.72.7-2.4
Patch foraging time to switch 0 sec1.52.32.51.5-1.61.4
Patch foraging water rate 0 sec3.04.85.3-2.32.3-2.0
Patch foraging water rate 12 sec2.84.35.6-2.42.1-1.7
Patch foraging water rate 18 sec1.31.82.2-1.21.5-1.3
Patch foraging water rate 24 sec4.05.66.8-2.32.6-2.2
Patch foraging water rate 6 sec1.72.53.1-1.71.8-1.2
Seeking ratio, delayed vs. immediate footshock9.711.212.03.4-3.53.1
Distance traveled before self-admin0.20.20.60.30.2-0.7
Distance traveled after self-admin0.70.81.61.3-0.80.2
Extensor digitorum longus weight1.55.99.0-3.02.5-1.6
Bone: elastic displacement0.70.81.4-0.50.9-1.2
Bone: elastic work3.44.45.5-1.82.3-2.2
Bone: endosteal estimation1.22.64.0-2.01.7-0.9
Bone: endosteal perimeter3.47.08.6-2.92.7-2.2
Epididymis fat weight22.752.881.5-9.07.4-4.7
Delta time in closed arm before/after self-admin0.70.61.00.6-0.71.0
Delta time in open arm before/after self-admin0.20.20.6-0.8-0.00.2
Diff in mean of infusions in LGA sessions1.21.31.8-1.11.0-1.3
Delay discount exponential model param2.22.33.91.1-1.42.0
Extinction: sum of active levers before priming0.00.00.0-0.0-0.1-0.1
Active lever presses in extinction session 64.24.04.6-1.92.0-2.2
Bone: final force6.310.313.7-3.73.5-2.3
Bone: final moment6.510.614.4-3.83.5-2.2
Food consumed during 24 hour testing period0.10.20.3-0.60.40.1
Glucose8.112.315.6-3.93.4-3.1
Heart weight8.211.615.5-3.93.5-2.7
Delay discount hyperbolic model param1.81.93.40.9-1.31.9
Intermittent access intake day 1-15 change0.30.30.5-0.30.5-0.7
Intermittent access intake escalation0.10.10.2-0.10.3-0.5
Intermittent access intake escalation 20.30.30.4-0.60.5-0.4
Intermitt. access day 1 inactive lever presses0.91.01.1-1.01.0-1.0
Intermitt. access day 15 inactive lever presses2.93.24.1-1.41.9-2.0
Intermitt. access escalation Index0.20.20.30.3-0.40.5
Intermittent access day 1 total infusions0.40.50.70.9-0.70.4
Intermittent access day 15 total infusions0.10.10.30.6-0.2-0.0
Intermittent access terminal intake (last 3 days)0.00.10.10.30.0-0.3
Intermittent access total infusions0.50.61.11.1-0.70.4
Intermittent access day 1 locomotion2.22.33.61.9-1.51.1
Intermittent access day 15 total locomotion0.10.10.2-0.20.3-0.4
Intermittent access total locomotion1.11.31.91.4-1.10.9
Intermittent access standard deviation0.10.10.10.3-0.30.2
Left kidney weight6.919.428.8-5.44.8-2.5
Right kidney weight6.718.927.3-5.24.8-2.6
Cocaine induced anxiety3.33.84.22.0-2.01.8
Post-drug Anxiety0.80.81.10.9-1.00.8
Baseline Anxiety1.41.51.5-1.21.2-1.2
Tail length1.02.94.2-2.01.7-1.3
Length with tail2.48.612.9-3.63.0-2.0
Length without tail2.45.28.6-2.92.4-1.2
Times rat made contact with spout0.80.91.6-1.31.0-0.4
Lifetime Intake0.80.91.71.3-0.90.5
Liver weight, left4.16.59.3-3.12.6-1.9
Liver weight, right5.79.515.3-3.93.1-1.9
Locomotor activity0.10.10.20.3-0.40.4
Locomotor testing distance0.30.50.80.9-0.70.6
Locomotor testing rearing0.40.61.0-0.30.7-1.0
Locomotion in novel chamber0.40.50.8-0.50.9-0.7
Locomotion in novel chamber post-restriction0.10.20.20.30.4-0.5
Fecal boli incidents, locomotor time 10.40.40.6-0.80.5-0.6
Change in fecal boli incidents, locomotor task0.10.10.3-0.40.10.5
Time >=10cm from walls, locomotor time 10.20.20.30.4-0.60.5
Bouts of movement, locomotor time 10.10.10.2-0.40.3-0.1
Total resting periods, locomotor time 10.10.10.2-0.50.4-0.2
Rest time, locomotor task time 10.10.10.2-0.40.40.2
Distance moved, locomotor task time 10.20.20.40.40.0-0.7
Vertical activity count, locomotor time 10.30.30.60.8-0.4-0.1
Time >=10cm from walls, locomotor time 20.00.00.1-0.20.20.0
Bouts of movement, locomotor time 20.00.00.00.0-0.10.1
Total resting periods, locomotor time 20.00.00.00.0-0.0-0.1
Rest time, locomotor task time 20.00.00.00.1-0.20.1
Distance moved, locomotor task time 20.00.00.10.40.0-0.0
Vertical activity count, locomotor time 20.30.30.40.6-0.50.5
Light reinforcement 10.10.20.30.5-0.20.5
Light reinforcement 20.40.50.60.6-0.70.8
Bone: marrow area1.32.94.5-2.11.8-1.0
Bone: maximum diameter4.58.212.4-3.52.9-2.0
Bone: maximum force4.47.611.0-3.33.0-1.7
Bone: maximum moment4.47.511.1-3.33.0-1.7
Mean time between licks in bursts0.81.21.70.6-1.21.3
Mean num. licks in bursts0.20.20.4-0.40.6-0.2
Cd content in liver2.83.13.71.6-1.71.9
Co content in liver0.10.10.20.3-0.10.4
Cu content in liver0.30.40.5-0.60.7-0.5
Fe content in liver0.00.00.00.1-0.20.1
K content in liver0.70.70.8-0.80.9-0.8
Mg content in liver1.81.92.5-1.11.4-1.6
Mn content in liver0.20.20.4-0.50.6-0.4
Na content in liver4.95.25.2-2.32.3-2.3
Rb content in liver0.10.10.10.4-0.1-0.4
Se content in liver0.00.00.10.2-0.1-0.3
Sr content in liver1.00.91.91.4-0.90.1
Zn content in liver0.50.60.8-0.40.9-0.9
Bone: minimum diameter4.99.113.4-3.73.1-2.1
Time in familiar zone, hab. session 13.43.13.4-1.81.7-1.8
Time in novel zone, hab. session 15.55.45.92.3-2.42.3
Total zone transitions, hab. session 10.20.30.60.10.4-0.8
Total locomotion distance, hab. session 10.20.30.30.6-0.60.4
Locomotion velocity, hab. session 10.10.20.20.4-0.50.4
Time in familiar zone, hab. session 20.90.91.20.5-1.11.1
Time in novel zone, hab. session 20.40.40.6-0.50.8-0.7
Total zone transitions, hab. session 20.20.30.4-0.20.6-0.7
Total locomotion distance, hab. session 20.20.20.4-0.60.5-0.3
Locomotion velocity, hab. session 20.40.50.7-0.80.8-0.6
Novel to familiar place preference ratio0.60.61.10.4-0.91.0
Novelty place preference0.60.61.00.5-0.91.0
Time in novel zone, NPP test0.70.71.20.3-0.91.1
Total zone transitions, NPP test0.10.10.2-0.30.5-0.1
Total locomotion distance, NPP test0.00.00.10.0-0.00.4
Locomotion velocity, NPP test0.00.10.10.20.00.3
Intraocular pressure0.10.20.30.2-0.40.5
Delta distance traveled before/after self-admin1.31.41.61.1-1.31.1
Delta ambulatory time before/after self-admin1.31.41.51.2-1.21.2
Parametrial fat weight17.033.149.1-7.05.9-3.9
Pavlov. Cond. lever latency0.30.30.50.7-0.70.3
Pavlov. Cond. magazine entry latency0.30.40.8-0.90.5-0.0
Pavlov. Cond. change in total contacts1.31.43.2-1.81.0-0.3
Pavlov. Cond. index score0.60.71.5-1.20.8-0.2
Pavlov. Cond. latency score0.50.61.2-1.10.7-0.2
Pavlov. Cond. lever contacts0.81.01.6-1.31.0-0.6
Pavlov. Cond. magazine entry number0.30.41.01.0-0.4-0.2
Pavlov. Cond. intertrial magazine entries0.40.40.8-0.90.70.2
Pavlov. Cond. lever-magazine prob. diff.0.60.71.6-1.30.7-0.1
Pavlov. Cond. response bias0.40.51.0-1.00.7-0.2
Pavlov. Cond. lever latency0.30.41.11.0-0.4-0.2
Pavlov. Cond. magazine entry latency0.20.20.40.3-0.60.3
Pavlov. Cond. change in total contacts0.10.10.4-0.60.20.0
Pavlov. Cond. index score0.00.10.1-0.3-0.10.3
Pavlov. Cond. latency score0.00.10.1-0.3-0.10.2
Pavlov. Cond. lever contacts0.20.30.6-0.80.40.1
Pavlov. Cond. magazine entry number0.00.00.1-0.10.3-0.1
Pavlov. Cond. intertrial magazine entries2.83.64.5-2.12.1-1.4
Pavlov. Cond. lever-magazine prob. diff.0.00.00.0-0.2-0.20.2
Pavlov. Cond. response bias0.10.10.2-0.4-0.20.4
Time in closed arm before self-admin0.10.10.4-0.00.2-0.6
Time in closed arm after self-admin0.10.10.20.5-0.40.3
Time in open arm before self-admin0.60.71.01.0-0.80.7
Time in open arm after self-admin0.00.00.1-0.2-0.20.1
Bone: periosteal estimation5.411.116.2-4.03.5-2.2
Bone: periosteal perimeter9.716.120.8-4.64.1-3.2
Bone: post-yield work0.20.30.5-0.70.20.5
Progressive ratio test 1 active lever presses0.80.81.41.2-0.80.5
Progressive ratio test 1 breakpoint0.50.51.11.1-0.60.2
Progressive ratio test 1 inactive lever presses0.60.71.01.0-0.80.7
Progressive ratio test 2 active lever presses0.90.91.3-0.71.0-1.1
Progressive ratio test 2 breakpoint0.91.01.3-0.61.1-1.1
Progressive ratio test 2 inactive lever presses0.00.00.00.0-0.00.1
Incentive Sensitization - Responses2.42.42.7-1.51.6-1.5
Incentive Sensitization - Breakpoint2.02.02.2-1.41.5-1.3
Sum of active levers in priming session hrs 5-60.00.00.00.1-0.00.0
Progressive ratio1.31.52.51.6-1.30.7
Food seeking constrained by brief footshock4.55.59.13.0-2.41.3
Seeking ratio, punishment vs. effort0.10.20.30.5-0.40.4
Retroperitoneal fat weight27.189.1130.3-11.49.8-6.4
Reaction time number correct0.40.60.9-1.00.8-0.7
Reaction time mean minus median0.30.40.7-0.20.6-0.9
Reaction time mean minus median AUC1.21.62.9-0.71.2-1.7
Reaction time num false alarms0.10.10.3-0.20.10.5
Reaction time num false alarms AUC0.10.20.3-0.50.50.1
Reaction time trials correct on left0.40.60.9-1.00.8-0.7
Reaction time trials on left0.40.60.9-0.90.7-0.7
Reaction time mean0.50.61.41.2-0.6-0.4
Reaction time mean AUC0.50.71.51.2-0.6-0.4
Median of all reaction times0.60.91.91.4-0.8-0.3
Reaction time omissions0.10.20.30.5-0.60.3
Reaction time false alarm rate0.10.10.40.0-0.00.6
Reaction time premature initiation rate0.00.00.10.20.1-0.3
Reaction time premature initiations0.40.50.7-0.60.7-0.8
Std. dev. reaction times0.20.20.5-0.10.4-0.7
Reaction time trials completed0.40.60.9-0.90.7-0.7
Reaction time trials AUC0.60.91.4-1.20.9-0.7
Run reversals in cocaine runway, females0.10.10.10.3-0.3-0.2
Run reversals in cocaine runway, males0.10.10.30.5-0.0-0.1
Latency to leave start box in cocaine runway0.40.51.0-0.50.3-1.0
Latency to leave start box in cocaine runway, F0.50.50.8-0.70.6-0.9
Latency to leave start box in cocaine runway, M0.20.20.5-0.30.2-0.7
Std. dev. time between licks in bursts2.63.13.51.6-1.91.9
Total sessions with >9 infusions0.40.40.80.9-0.50.4
Short access day 1 total inactive lever presses2.42.73.11.5-1.61.8
Short access day 10 total inactive lever presses1.31.41.8-1.31.4-0.8
Short access day 1 total infusions1.41.52.11.5-1.11.1
Short access day 10 total infusions1.31.42.41.5-1.20.8
Short access total infusions1.21.32.51.6-1.00.6
Short access day 1 locomotion0.20.20.60.8-0.30.1
Short access day 10 total locomotion0.50.60.90.9-0.70.6
Short access total locomotion0.80.82.01.4-0.60.2
One hour access (0.3 mA shock)0.20.20.30.5-0.60.3
Compulsive drug intake0.20.20.4-0.0-0.40.7
One hour access (shock baseline)0.30.30.70.8-0.50.2
Social response proportion0.40.41.10.3-0.41.0
Social responses1.11.42.3-1.51.2-0.7
Social time0.30.40.5-0.60.6-0.7
Soleus weight3.29.511.2-3.13.4-2.7
Bone: stiffness1.72.74.2-2.11.8-0.9
Tibialis anterior weight0.20.71.3-1.10.8-0.5
Time to tail flick, vehicle, before self-admin0.20.20.4-0.1-0.30.6
Time to tail flick, vehicle, after self-admin0.70.80.9-1.00.9-0.8
Time to tail flick, test, before self-admin0.40.41.11.0-0.40.1
Time to tail flick, test, after self-admin0.00.00.1-0.2-0.00.1
Delta time to tail flick, vehicle, before/after SA5.04.95.8-2.02.2-2.4
Delta time to tail flick, test, before/after SA0.70.61.7-1.30.5-0.0
Tibia length0.10.40.7-0.80.7-0.3
Ambulatory time before self-admin0.20.20.60.00.4-0.8
Ambulatory time after self-admin1.31.42.71.6-1.20.5
Bone: tissue strength0.20.20.20.5-0.50.2
Total heroin consumption6.77.98.6-2.92.8-2.7
Bone: trabecular number0.50.81.7-1.30.9-0.1
Bone: trabecular spacing2.93.74.42.0-2.11.7
Bone: trabecular thickness9.811.715.2-3.93.6-2.6
Bone: trabecular tissue density2.33.23.71.9-1.81.6
Water consumed over 24 hours0.10.10.2-0.30.5-0.2
Number of responses in last shaping day1.11.11.71.3-1.00.9