LOC102550562

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Adipose isoform ratio XR_005499321.1 0.06 0.04 3.4e-05 0.03 0.03 0.03 0.03 1.8e-04 3.1e-04 3.7e-04 1.8e-04
2 Adipose gene expression LOC102550562 0.1 0.06 3.5e-09 0.04 0.05 0.04 0.04 1.5e-05 7.5e-06 1.3e-05 3.3e-05
3 Adipose alternative TSS XR_005499320.1 0.06 0.04 3.3e-06 0.03 0.04 0.03 0.04 1.2e-04 7.3e-05 1.5e-04 7.8e-05
4 Adipose alternative TSS XR_005499321.1 0.07 0.04 1.7e-06 0.03 0.04 0.03 0.04 9.6e-05 4.3e-05 1.0e-04 6.2e-05

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density0.10.10.10.1-0.4-0.30.3
Area under the delay curve0.50.50.8-0.4-0.9-0.80.7
BMI with tail1.44.55.31.72.32.2-2.2
BMI without tail7.214.919.02.64.44.1-4.1
Body weight2.912.315.62.24.03.8-3.8
Weight adjusted by age1.01.21.50.81.11.2-1.2
Bone surface0.40.71.0-1.0-0.9-0.80.7
Bone volume0.00.10.1-0.2-0.3-0.20.1
Breakpoint value in progressive ratio session0.20.20.30.1-0.6-0.40.4
Number of licking bursts2.32.74.42.11.41.5-1.4
Context. condit. distance diff. score2.22.73.4-1.4-1.9-1.61.6
Locomotion velocity, session 11.41.52.1-0.7-1.4-1.41.3
Locomotion distance, session 10.91.21.4-1.2-1.0-1.11.1
Locomotion velocity, session 20.20.20.3-0.4-0.5-0.40.4
Locomotion distance, session 20.10.10.3-0.6-0.0-0.20.2
Locomotion velocity, session 30.30.30.3-0.5-0.6-0.60.5
Locomotion distance, session 32.12.22.9-1.2-1.7-1.51.5
Stereotopy head waving bouts, day 31.31.52.40.81.51.3-1.2
Stereotopy head waving duration, day 30.10.10.4-0.6-0.1-0.30.3
Locomotion velocity, session 70.10.10.20.4-0.5-0.20.2
Locomotion distance, session 70.10.10.20.5-0.20.1-0.2
Stereotopy head waving bouts, day 71.11.22.1-1.4-0.8-1.01.1
Stereotopy head waving duration, day 70.91.22.5-1.6-0.7-0.90.9
Locomotion velocity, session 84.04.76.9-1.5-2.6-2.32.2
Locomotion distance, session 81.31.92.1-1.5-1.4-1.31.3
Degree of sensitization distance2.72.73.21.31.71.8-1.8
Degree of sensitization stereotypy4.14.55.8-2.4-2.0-2.02.0
Conditioned locomotion0.20.30.3-0.3-0.5-0.60.6
Cocaine response after cond. corrected0.40.51.11.00.30.6-0.6
Cocaine response after cond. not corrected0.00.00.10.1-0.2-0.10.1
Cocaine response before conditioning1.31.52.7-1.6-0.8-1.21.2
Saline control response0.20.30.9-1.00.30.2-0.2
Bone: connectivity density0.91.51.9-0.8-1.4-1.31.3
Bone: cortical apparent density0.60.81.51.20.70.8-0.8
Bone: cortical area0.20.30.50.10.50.6-0.7
Bone: cortical porosity1.01.02.0-1.4-0.7-0.91.0
Bone: cortical porosity0.70.81.5-1.2-0.6-0.80.8
Bone: cortical thickness0.20.40.50.70.60.6-0.6
Bone: cortical thickness0.20.20.4-0.3-0.6-0.50.4
Bone: cortical tissue density0.50.71.41.20.60.7-0.7
Condit. Reinf. active minus inactive responses1.51.72.00.91.41.4-1.4
Condit. Reinf. active-inactive response ratio1.11.21.50.51.21.2-1.2
Condit. Reinf. active responses1.21.41.61.01.21.3-1.3
Condit. Reinf. inactive responses0.10.10.30.50.20.3-0.3
Incentive salience index mean0.81.01.20.90.91.1-1.1
Condit. Reinf. lever presses0.00.10.20.4-0.3-0.10.0
Condit. Reinf. active minus inactive responses0.60.72.8-1.7-0.1-0.10.1
Condit. Reinf. active-inactive response ratio0.10.10.2-0.5-0.4-0.20.2
Condit. Reinf. active responses0.81.14.2-2.10.10.1-0.1
Condit. Reinf. inactive responses0.70.82.3-1.50.80.5-0.5
Condit. Reinf. lever presses6.89.321.5-4.6-2.2-2.42.3
Condit. Reinf. lever reinforcers received1.01.45.4-2.3-0.1-0.20.1
Conditioned reinforcement - actives3.53.53.7-1.8-1.9-1.91.8
Conditioned reinforcement - inactives0.00.00.00.1-0.2-0.10.2
Conditioned locomotion3.23.94.1-1.9-2.0-2.02.0
Patch foraging indifference point 0 sec1.32.16.2-2.5-0.7-0.90.9
Patch foraging indifference point AUC0.10.10.10.20.20.3-0.3
Delay disc. indifference point, 0s delay0.10.10.3-0.6-0.0-0.00.0
Delay disc. indifference point, 16s delay0.91.01.3-0.6-1.1-1.11.0
Delay disc. indifference point, 2s delay0.70.81.5-1.2-0.7-0.80.7
Delay disc. indifference point, 24s delay0.20.20.50.7-0.3-0.10.1
Delay disc. indifference point, 4s delay0.00.10.2-0.4-0.2-0.10.0
Delay disc. indifference point, 8s delay0.80.91.2-0.7-1.1-1.00.9
Indifference point function ln k1.72.43.5-1.9-1.3-1.51.5
Indifference point function log k1.72.43.5-1.9-1.3-1.51.5
Patch foraging total patch changes 0 sec1.21.95.3-2.3-0.7-0.90.9
Patch foraging total patch changes 12 sec0.10.20.2-0.30.50.5-0.5
Patch foraging total patch changes 18 sec0.10.10.5-0.70.10.1-0.2
Patch foraging total patch changes 24 sec0.10.20.2-0.20.40.4-0.5
Patch foraging total patch changes 6 sec0.40.61.6-1.3-0.4-0.60.6
Patch foraging time to switch 0 sec1.01.63.61.91.01.0-0.9
Patch foraging water rate 0 sec1.42.24.6-2.1-1.2-1.21.2
Patch foraging water rate 12 sec1.52.23.7-1.9-1.3-1.41.3
Patch foraging water rate 18 sec0.10.20.4-0.6-0.4-0.30.3
Patch foraging water rate 24 sec1.92.62.9-1.4-1.7-1.71.6
Patch foraging water rate 6 sec1.31.81.9-1.4-1.3-1.41.3
Seeking ratio, delayed vs. immediate footshock0.40.51.61.30.10.4-0.4
Distance traveled before self-admin0.10.10.30.50.30.3-0.3
Distance traveled after self-admin0.00.00.10.1-0.0-0.20.2
Extensor digitorum longus weight0.41.72.01.21.21.4-1.4
Bone: elastic displacement0.10.10.50.7-0.2-0.10.1
Bone: elastic work0.50.71.10.3-1.0-0.90.9
Bone: endosteal estimation0.10.30.5-0.10.50.6-0.7
Bone: endosteal perimeter0.10.20.7-0.8-0.3-0.10.1
Epididymis fat weight4.310.011.02.73.33.3-3.3
Delta time in closed arm before/after self-admin1.41.41.91.40.91.1-1.2
Delta time in open arm before/after self-admin0.40.41.4-1.2-0.3-0.30.3
Diff in mean of infusions in LGA sessions1.92.14.02.01.21.2-1.2
Delay discount exponential model param0.50.60.80.50.90.8-0.8
Extinction: sum of active levers before priming0.20.20.20.40.30.4-0.4
Active lever presses in extinction session 63.53.46.6-2.6-1.3-1.61.6
Bone: final force0.10.20.3-0.3-0.6-0.50.5
Bone: final moment0.10.20.3-0.4-0.5-0.40.4
Food consumed during 24 hour testing period2.73.24.1-2.0-1.6-1.71.7
Glucose0.10.20.3-0.3-0.6-0.40.4
Heart weight0.40.61.0-1.0-0.7-0.70.6
Delay discount hyperbolic model param0.50.50.70.60.80.7-0.7
Intermittent access intake day 1-15 change3.13.03.5-1.9-1.7-1.71.7
Intermittent access intake escalation3.43.34.3-2.1-1.7-1.81.7
Intermittent access intake escalation 20.40.30.8-0.9-0.5-0.50.4
Intermitt. access day 1 inactive lever presses0.30.30.40.70.50.5-0.5
Intermitt. access day 15 inactive lever presses0.10.10.1-0.1-0.3-0.30.3
Intermitt. access escalation Index0.00.00.0-0.10.0-0.10.1
Intermittent access day 1 total infusions0.20.20.3-0.5-0.5-0.40.3
Intermittent access day 15 total infusions3.13.53.8-1.9-1.9-1.81.8
Intermittent access terminal intake (last 3 days)1.11.21.5-1.2-1.1-1.01.0
Intermittent access total infusions0.40.50.6-0.7-0.8-0.60.6
Intermittent access day 1 locomotion0.40.40.6-0.3-0.8-0.70.7
Intermittent access day 15 total locomotion1.21.32.0-1.4-1.0-1.01.0
Intermittent access total locomotion0.20.20.3-0.6-0.5-0.40.4
Intermittent access standard deviation0.00.00.0-0.10.10.1-0.1
Left kidney weight0.82.33.10.51.71.7-1.7
Right kidney weight0.71.92.70.41.71.5-1.5
Cocaine induced anxiety0.91.02.11.50.80.8-0.8
Post-drug Anxiety0.10.10.30.50.30.3-0.3
Baseline Anxiety1.71.82.9-1.7-1.2-1.21.1
Tail length2.98.912.41.03.53.3-3.3
Length with tail2.17.810.61.33.33.1-3.1
Length without tail0.00.00.00.2-0.1-0.10.1
Times rat made contact with spout1.11.31.51.01.21.2-1.1
Lifetime Intake0.70.80.9-0.9-0.9-0.80.8
Liver weight, left1.11.72.10.91.41.4-1.4
Liver weight, right5.99.711.72.53.43.3-3.2
Locomotor activity0.20.30.5-0.50.70.4-0.3
Locomotor testing distance0.30.50.7-0.70.90.7-0.7
Locomotor testing rearing2.03.24.50.62.12.0-2.0
Locomotion in novel chamber1.92.42.6-1.4-1.5-1.61.6
Locomotion in novel chamber post-restriction5.97.17.7-2.8-2.6-2.62.6
Fecal boli incidents, locomotor time 12.12.32.7-1.4-1.7-1.51.4
Change in fecal boli incidents, locomotor task0.40.40.60.80.70.5-0.5
Time >=10cm from walls, locomotor time 12.72.73.7-1.9-1.5-1.61.6
Bouts of movement, locomotor time 10.20.20.3-0.5-0.5-0.50.4
Total resting periods, locomotor time 10.50.60.7-0.6-0.9-0.80.8
Rest time, locomotor task time 10.80.91.2-0.5-1.1-1.01.0
Distance moved, locomotor task time 11.11.21.50.61.21.2-1.2
Vertical activity count, locomotor time 10.40.50.60.30.80.8-0.8
Time >=10cm from walls, locomotor time 20.20.30.7-0.8-0.3-0.30.3
Bouts of movement, locomotor time 20.10.10.5-0.70.20.0-0.0
Total resting periods, locomotor time 20.10.10.3-0.60.1-0.00.0
Rest time, locomotor task time 20.20.20.80.90.20.2-0.1
Distance moved, locomotor task time 20.20.20.6-0.80.20.3-0.3
Vertical activity count, locomotor time 20.40.40.70.20.70.8-0.8
Light reinforcement 11.32.32.71.71.51.4-1.4
Light reinforcement 20.10.10.3-0.5-0.0-0.20.2
Bone: marrow area0.10.30.5-0.00.50.6-0.7
Bone: maximum diameter0.10.31.0-1.0-0.2-0.10.0
Bone: maximum force0.40.71.0-0.6-1.0-0.90.9
Bone: maximum moment0.40.70.9-0.7-1.0-0.90.8
Mean time between licks in bursts0.40.60.9-0.90.70.7-0.7
Mean num. licks in bursts1.31.52.8-1.7-1.1-1.11.0
Cd content in liver1.31.42.11.41.01.1-1.1
Co content in liver0.20.20.30.30.30.5-0.6
Cu content in liver0.80.91.30.41.11.1-1.1
Fe content in liver0.00.00.00.1-0.2-0.0-0.0
K content in liver0.50.50.60.70.80.7-0.6
Mg content in liver0.00.00.1-0.30.0-0.00.0
Mn content in liver0.20.20.30.4-0.5-0.50.5
Na content in liver1.01.01.7-1.3-0.7-1.01.0
Rb content in liver0.00.00.1-0.10.10.2-0.3
Se content in liver0.60.72.31.50.40.5-0.4
Sr content in liver0.40.40.7-0.2-0.8-0.70.6
Zn content in liver0.60.72.5-1.6-0.2-0.30.3
Bone: minimum diameter1.01.92.50.91.41.5-1.6
Time in familiar zone, hab. session 10.00.00.10.3-0.10.0-0.0
Time in novel zone, hab. session 10.60.60.80.50.90.8-0.8
Total zone transitions, hab. session 10.71.01.2-1.1-0.8-1.01.1
Total locomotion distance, hab. session 14.96.99.22.03.02.7-2.6
Locomotion velocity, hab. session 13.85.47.41.72.72.4-2.3
Time in familiar zone, hab. session 20.00.00.0-0.10.00.1-0.2
Time in novel zone, hab. session 20.10.10.1-0.3-0.2-0.20.2
Total zone transitions, hab. session 21.31.73.1-1.8-0.9-1.21.2
Total locomotion distance, hab. session 23.34.46.31.32.52.2-2.2
Locomotion velocity, hab. session 23.85.17.21.42.72.4-2.3
Novel to familiar place preference ratio0.10.10.5-0.7-0.1-0.20.3
Novelty place preference0.10.10.2-0.5-0.1-0.20.2
Time in novel zone, NPP test0.20.20.4-0.6-0.3-0.30.3
Total zone transitions, NPP test1.01.41.6-1.0-1.2-1.31.3
Total locomotion distance, NPP test3.04.14.91.72.22.1-2.1
Locomotion velocity, NPP test3.55.06.01.92.42.3-2.3
Intraocular pressure2.63.65.7-1.1-2.4-2.01.9
Delta distance traveled before/after self-admin0.20.20.5-0.7-0.2-0.40.5
Delta ambulatory time before/after self-admin0.70.80.9-0.9-0.7-0.91.0
Parametrial fat weight1.53.04.11.22.01.8-1.8
Pavlov. Cond. lever latency0.10.10.20.50.40.3-0.3
Pavlov. Cond. magazine entry latency0.20.20.9-0.9-0.0-0.00.0
Pavlov. Cond. change in total contacts0.10.10.2-0.5-0.4-0.20.2
Pavlov. Cond. index score0.10.10.3-0.6-0.00.1-0.1
Pavlov. Cond. latency score0.10.10.4-0.6-0.10.0-0.1
Pavlov. Cond. lever contacts0.00.00.00.0-0.00.2-0.2
Pavlov. Cond. magazine entry number0.30.31.11.10.30.2-0.2
Pavlov. Cond. intertrial magazine entries0.81.01.81.30.80.9-0.8
Pavlov. Cond. lever-magazine prob. diff.0.10.10.3-0.5-0.1-0.0-0.0
Pavlov. Cond. response bias0.10.10.10.00.20.3-0.3
Pavlov. Cond. lever latency8.611.523.64.92.72.8-2.7
Pavlov. Cond. magazine entry latency5.15.97.7-2.8-2.4-2.32.2
Pavlov. Cond. change in total contacts5.57.616.6-4.1-2.1-2.22.1
Pavlov. Cond. index score7.69.718.3-4.3-2.6-2.72.6
Pavlov. Cond. latency score7.89.617.3-4.2-2.7-2.72.6
Pavlov. Cond. lever contacts8.111.124.2-4.9-2.5-2.72.6
Pavlov. Cond. magazine entry number6.27.69.03.02.92.6-2.5
Pavlov. Cond. intertrial magazine entries3.24.15.71.22.42.2-2.2
Pavlov. Cond. lever-magazine prob. diff.6.88.716.9-4.1-2.4-2.52.4
Pavlov. Cond. response bias8.711.823.9-4.9-2.8-2.92.7
Time in closed arm before self-admin2.42.73.2-1.8-1.5-1.61.7
Time in closed arm after self-admin1.71.72.5-0.4-1.6-1.41.4
Time in open arm before self-admin1.92.13.71.91.21.3-1.3
Time in open arm after self-admin1.11.21.60.51.31.2-1.2
Bone: periosteal estimation0.10.20.3-0.20.30.5-0.6
Bone: periosteal perimeter0.10.10.3-0.50.10.2-0.2
Bone: post-yield work0.30.40.6-0.8-0.6-0.70.7
Progressive ratio test 1 active lever presses0.00.00.00.2-0.2-0.20.2
Progressive ratio test 1 breakpoint0.00.00.00.2-0.2-0.10.1
Progressive ratio test 1 inactive lever presses0.00.00.0-0.1-0.1-0.10.0
Progressive ratio test 2 active lever presses0.20.20.5-0.7-0.4-0.20.2
Progressive ratio test 2 breakpoint0.10.10.3-0.6-0.2-0.10.0
Progressive ratio test 2 inactive lever presses0.10.10.2-0.4-0.4-0.30.2
Incentive Sensitization - Responses0.20.20.9-0.9-0.2-0.10.1
Incentive Sensitization - Breakpoint0.30.31.0-1.0-0.3-0.20.2
Sum of active levers in priming session hrs 5-60.20.20.30.00.50.4-0.4
Progressive ratio1.01.21.9-0.5-1.4-1.21.2
Food seeking constrained by brief footshock0.30.41.1-1.10.60.4-0.4
Seeking ratio, punishment vs. effort1.51.93.2-0.21.81.5-1.4
Retroperitoneal fat weight10.735.337.05.66.06.1-6.1
Reaction time number correct0.50.81.0-1.0-0.6-0.91.0
Reaction time mean minus median0.10.20.4-0.60.40.3-0.3
Reaction time mean minus median AUC0.30.41.4-1.2-0.1-0.30.3
Reaction time num false alarms2.02.74.92.21.31.4-1.4
Reaction time num false alarms AUC0.71.02.61.60.50.7-0.8
Reaction time trials correct on left0.50.81.0-1.0-0.6-0.91.0
Reaction time trials on left0.60.81.1-1.0-0.6-0.91.0
Reaction time mean0.30.40.50.40.70.6-0.6
Reaction time mean AUC0.20.20.20.50.50.5-0.4
Median of all reaction times0.10.20.20.50.40.4-0.4
Reaction time omissions0.10.10.20.10.40.4-0.4
Reaction time false alarm rate1.21.73.71.90.71.1-1.1
Reaction time premature initiation rate2.33.04.30.52.11.9-2.0
Reaction time premature initiations0.81.11.9-0.21.41.1-1.1
Std. dev. reaction times0.50.71.00.11.00.9-0.9
Reaction time trials completed0.60.81.1-1.0-0.6-0.91.0
Reaction time trials AUC0.40.60.9-0.9-0.4-0.70.8
Run reversals in cocaine runway, females5.15.05.62.12.12.3-2.4
Run reversals in cocaine runway, males1.31.22.0-0.5-1.4-1.21.2
Latency to leave start box in cocaine runway0.91.01.31.11.00.9-0.9
Latency to leave start box in cocaine runway, F1.51.61.71.31.21.3-1.3
Latency to leave start box in cocaine runway, M0.10.10.2-0.2-0.3-0.40.5
Std. dev. time between licks in bursts1.41.72.60.31.61.5-1.4
Total sessions with >9 infusions1.51.72.5-1.6-1.1-1.21.2
Short access day 1 total inactive lever presses0.10.10.2-0.1-0.5-0.30.3
Short access day 10 total inactive lever presses0.20.20.40.20.70.5-0.4
Short access day 1 total infusions0.80.92.0-1.4-0.7-0.70.7
Short access day 10 total infusions0.10.10.2-0.3-0.4-0.30.2
Short access total infusions0.10.20.3-0.5-0.4-0.30.3
Short access day 1 locomotion4.34.65.0-2.2-2.1-2.12.1
Short access day 10 total locomotion0.00.00.1-0.2-0.1-0.10.1
Short access total locomotion0.20.20.3-0.5-0.3-0.40.4
One hour access (0.3 mA shock)0.30.30.9-1.0-0.4-0.30.3
Compulsive drug intake0.00.00.0-0.20.0-0.00.1
One hour access (shock baseline)0.50.61.3-1.1-0.7-0.60.6
Social response proportion1.11.21.70.81.31.1-1.0
Social responses2.73.44.01.62.01.9-1.9
Social time0.81.01.71.30.90.9-0.8
Soleus weight1.75.05.61.92.32.4-2.4
Bone: stiffness0.00.00.10.0-0.2-0.20.2
Tibialis anterior weight0.10.40.7-0.00.90.7-0.7
Time to tail flick, vehicle, before self-admin0.90.91.21.10.90.9-0.9
Time to tail flick, vehicle, after self-admin1.92.02.4-1.6-1.4-1.41.3
Time to tail flick, test, before self-admin0.00.00.10.3-0.2-0.0-0.0
Time to tail flick, test, after self-admin0.10.10.10.10.10.3-0.3
Delta time to tail flick, vehicle, before/after SA4.84.85.4-2.3-2.1-2.12.1
Delta time to tail flick, test, before/after SA0.00.00.0-0.20.1-0.00.0
Tibia length1.13.14.4-2.1-1.6-1.71.6
Ambulatory time before self-admin0.10.10.10.3-0.3-0.20.2
Ambulatory time after self-admin0.40.50.7-0.3-0.7-0.80.8
Bone: tissue strength0.80.81.2-0.6-0.8-1.01.1
Total heroin consumption0.10.10.1-0.3-0.3-0.30.3
Bone: trabecular number0.20.20.50.7-0.5-0.30.3
Bone: trabecular spacing0.70.92.1-1.5-0.6-0.70.7
Bone: trabecular thickness0.60.81.11.00.70.8-0.9
Bone: trabecular tissue density2.33.34.21.42.11.9-1.8
Water consumed over 24 hours0.40.51.01.00.50.5-0.5
Number of responses in last shaping day1.51.61.80.91.31.4-1.4