LOC102549269

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 PL intron excision ratio chr4_128600096_128677461 0.03 0.02 6.9e-04 0.02 0.02 0.02 0.01 3.1e-03 4.6e-03 1.1e-03 7.1e-03
2 PL intron excision ratio chr4_128600096_128609136 0.04 0.03 7.1e-05 0.03 0.03 0.03 0.03 2.4e-04 1.9e-04 5.5e-04 1.5e-04
3 BLA intron excision ratio chr4_128600096_128609136 0.05 0.04 6.6e-03 0.02 0.02 0.04 0.01 3.4e-02 2.4e-02 4.2e-03 4.8e-02

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
Bone: apparent density0.10.10.20.1-0.5-0.3
Area under the delay curve0.00.00.10.3-0.1-0.1
BMI with tail0.62.02.9-1.4-1.7-1.0
BMI without tail1.73.54.92.21.91.4
Body weight0.00.20.20.30.4-0.5
Weight adjusted by age3.23.74.22.02.01.6
Bone surface0.10.20.30.3-0.50.3
Bone volume0.20.30.80.1-0.90.5
Breakpoint value in progressive ratio session0.80.92.40.40.2-1.5
Number of licking bursts0.60.71.01.00.7-0.7
Context. condit. distance diff. score0.70.81.10.80.81.0
Locomotion velocity, session 10.60.61.01.00.90.3
Locomotion distance, session 10.20.20.6-0.20.0-0.8
Locomotion velocity, session 20.00.00.00.2-0.1-0.1
Locomotion distance, session 21.62.36.1-0.6-0.6-2.5
Locomotion velocity, session 32.12.53.7-1.7-1.9-0.9
Locomotion distance, session 39.910.815.3-3.5-3.9-2.2
Stereotopy head waving bouts, day 30.30.40.5-0.7-0.60.5
Stereotopy head waving duration, day 31.82.22.51.31.61.6
Locomotion velocity, session 70.20.20.4-0.5-0.6-0.4
Locomotion distance, session 73.14.04.2-2.0-2.0-2.0
Stereotopy head waving bouts, day 70.80.91.50.41.21.0
Stereotopy head waving duration, day 72.12.54.61.22.11.2
Locomotion velocity, session 83.13.75.52.32.11.1
Locomotion distance, session 80.71.02.3-0.7-0.5-1.5
Degree of sensitization distance5.55.68.52.52.91.3
Degree of sensitization stereotypy0.80.81.70.61.30.7
Conditioned locomotion0.00.00.0-0.2-0.1-0.0
Cocaine response after cond. corrected0.50.61.6-0.20.21.3
Cocaine response after cond. not corrected0.10.10.1-0.20.20.4
Cocaine response before conditioning0.60.82.0-0.3-0.4-1.4
Saline control response7.09.211.8-3.0-3.4-2.6
Bone: connectivity density0.50.81.20.91.1-0.6
Bone: cortical apparent density0.40.50.9-0.9-0.3-0.7
Bone: cortical area0.30.40.7-0.1-0.80.7
Bone: cortical porosity0.30.30.50.70.70.1
Bone: cortical porosity0.30.30.50.60.70.4
Bone: cortical thickness0.81.32.3-1.1-1.5-0.5
Bone: cortical thickness0.30.40.9-0.3-1.0-0.5
Bone: cortical tissue density0.30.40.8-0.9-0.2-0.7
Condit. Reinf. active minus inactive responses0.10.10.20.30.1-0.4
Condit. Reinf. active-inactive response ratio0.80.91.11.10.80.9
Condit. Reinf. active responses0.20.30.9-0.10.1-0.9
Condit. Reinf. inactive responses0.40.50.8-0.70.4-0.9
Incentive salience index mean0.91.12.3-0.4-0.9-1.5
Condit. Reinf. lever presses2.02.75.3-1.0-1.4-2.3
Condit. Reinf. active minus inactive responses4.35.47.22.72.22.1
Condit. Reinf. active-inactive response ratio3.43.65.72.41.91.2
Condit. Reinf. active responses2.33.23.61.81.71.9
Condit. Reinf. inactive responses0.10.10.2-0.4-0.40.2
Condit. Reinf. lever presses0.50.71.11.00.50.9
Condit. Reinf. lever reinforcers received1.92.73.11.81.51.6
Conditioned reinforcement - actives1.61.62.60.91.21.6
Conditioned reinforcement - inactives1.21.33.70.50.11.9
Conditioned locomotion2.22.73.81.31.61.9
Patch foraging indifference point 0 sec0.00.00.1-0.20.10.3
Patch foraging indifference point AUC0.70.82.3-0.30.11.5
Delay disc. indifference point, 0s delay0.80.91.5-1.1-1.2-0.3
Delay disc. indifference point, 16s delay0.50.51.3-0.3-0.31.1
Delay disc. indifference point, 2s delay0.40.51.30.2-0.3-1.1
Delay disc. indifference point, 24s delay0.10.10.2-0.10.0-0.5
Delay disc. indifference point, 4s delay0.10.10.20.40.2-0.2
Delay disc. indifference point, 8s delay0.30.41.01.00.30.1
Indifference point function ln k1.72.44.22.11.7-0.1
Indifference point function log k1.72.44.22.11.7-0.1
Patch foraging total patch changes 0 sec0.10.20.60.10.30.8
Patch foraging total patch changes 12 sec0.60.71.4-1.2-0.9-0.0
Patch foraging total patch changes 18 sec1.11.52.2-1.5-1.1-1.0
Patch foraging total patch changes 24 sec0.10.10.20.40.4-0.0
Patch foraging total patch changes 6 sec0.71.11.8-1.4-0.90.8
Patch foraging time to switch 0 sec5.78.710.2-3.0-3.2-2.7
Patch foraging water rate 0 sec4.87.79.53.13.12.1
Patch foraging water rate 12 sec3.75.78.22.92.61.5
Patch foraging water rate 18 sec2.53.34.82.22.2-0.7
Patch foraging water rate 24 sec0.10.20.40.30.60.3
Patch foraging water rate 6 sec4.36.310.22.93.20.7
Seeking ratio, delayed vs. immediate footshock0.20.20.50.70.3-0.3
Distance traveled before self-admin0.90.92.1-1.4-0.80.3
Distance traveled after self-admin1.71.95.3-0.20.72.3
Extensor digitorum longus weight1.87.110.4-3.2-2.7-1.9
Bone: elastic displacement0.40.50.70.80.80.4
Bone: elastic work0.50.60.90.80.50.9
Bone: endosteal estimation1.63.44.62.11.41.9
Bone: endosteal perimeter0.10.30.60.80.40.1
Epididymis fat weight0.71.75.0-0.1-0.1-2.2
Delta time in closed arm before/after self-admin0.90.91.7-0.7-0.7-1.3
Delta time in open arm before/after self-admin1.71.63.21.00.91.8
Diff in mean of infusions in LGA sessions0.10.10.30.20.1-0.5
Delay discount exponential model param0.10.10.2-0.50.00.3
Extinction: sum of active levers before priming1.11.11.9-1.0-0.5-1.4
Active lever presses in extinction session 60.50.50.60.80.6-0.6
Bone: final force1.93.05.01.80.92.2
Bone: final moment2.03.36.11.70.92.5
Food consumed during 24 hour testing period0.10.10.40.10.20.6
Glucose0.30.50.90.90.70.1
Heart weight1.42.03.11.81.6-0.5
Delay discount hyperbolic model param0.20.20.3-0.50.00.5
Intermittent access intake day 1-15 change1.91.93.61.51.9-0.2
Intermittent access intake escalation0.90.91.60.81.3-0.7
Intermittent access intake escalation 20.10.10.30.30.60.0
Intermitt. access day 1 inactive lever presses0.30.31.0-0.00.11.0
Intermitt. access day 15 inactive lever presses3.33.76.01.91.22.5
Intermitt. access escalation Index0.90.81.0-0.7-1.00.9
Intermittent access day 1 total infusions1.51.72.71.11.11.6
Intermittent access day 15 total infusions2.42.73.91.92.00.8
Intermittent access terminal intake (last 3 days)3.74.05.82.22.41.1
Intermittent access total infusions2.42.73.71.71.91.2
Intermittent access day 1 locomotion2.02.13.31.31.21.8
Intermittent access day 15 total locomotion1.21.22.01.21.40.5
Intermittent access total locomotion2.52.83.61.71.91.5
Intermittent access standard deviation0.10.10.40.10.1-0.6
Left kidney weight1.64.46.42.52.21.4
Right kidney weight2.26.310.03.22.90.7
Cocaine induced anxiety2.52.93.71.91.61.6
Post-drug Anxiety2.52.83.92.01.81.2
Baseline Anxiety0.60.61.2-1.1-0.80.2
Tail length7.522.729.05.45.33.3
Length with tail1.55.68.52.72.91.0
Length without tail1.73.74.3-1.9-1.7-2.1
Times rat made contact with spout0.50.61.60.2-0.5-1.3
Lifetime Intake1.51.72.51.31.61.0
Liver weight, left1.01.63.31.31.8-0.1
Liver weight, right0.81.32.10.91.50.9
Locomotor activity0.71.22.21.11.5-0.3
Locomotor testing distance0.61.02.40.60.5-1.5
Locomotor testing rearing8.413.017.9-3.3-3.2-4.2
Locomotion in novel chamber0.50.61.30.70.41.1
Locomotion in novel chamber post-restriction0.80.91.51.21.10.3
Fecal boli incidents, locomotor time 10.20.20.50.70.40.0
Change in fecal boli incidents, locomotor task0.50.40.8-0.9-0.20.7
Time >=10cm from walls, locomotor time 10.40.41.1-0.2-0.11.1
Bouts of movement, locomotor time 10.20.20.60.80.2-0.4
Total resting periods, locomotor time 10.50.51.01.00.7-0.2
Rest time, locomotor task time 10.10.10.10.30.1-0.3
Distance moved, locomotor task time 10.70.81.4-0.8-0.6-1.2
Vertical activity count, locomotor time 10.91.01.5-1.2-1.0-0.7
Time >=10cm from walls, locomotor time 20.40.41.0-0.1-0.31.0
Bouts of movement, locomotor time 20.91.01.0-1.0-1.0-1.0
Total resting periods, locomotor time 21.21.31.5-1.2-1.1-1.0
Rest time, locomotor task time 20.00.10.1-0.3-0.30.0
Distance moved, locomotor task time 20.30.30.4-0.5-0.6-0.5
Vertical activity count, locomotor time 20.50.50.6-0.7-0.7-0.8
Light reinforcement 12.13.97.8-1.5-1.2-2.8
Light reinforcement 21.72.26.3-0.5-0.5-2.5
Bone: marrow area1.53.24.32.11.31.9
Bone: maximum diameter0.30.61.1-0.7-1.00.6
Bone: maximum force1.32.33.71.70.71.9
Bone: maximum moment1.52.54.71.60.62.2
Mean time between licks in bursts0.10.20.30.30.5-0.5
Mean num. licks in bursts0.20.20.5-0.4-0.70.1
Cd content in liver0.30.30.7-0.4-0.80.0
Co content in liver2.63.04.51.92.11.0
Cu content in liver0.20.30.5-0.7-0.2-0.6
Fe content in liver0.20.20.3-0.6-0.1-0.4
K content in liver2.32.34.11.42.00.9
Mg content in liver1.61.62.91.21.70.8
Mn content in liver3.33.86.22.32.50.0
Na content in liver0.20.20.30.50.40.3
Rb content in liver0.60.80.90.90.90.8
Se content in liver0.81.02.3-0.7-0.4-1.5
Sr content in liver0.30.30.60.80.10.6
Zn content in liver0.10.20.40.20.6-0.1
Bone: minimum diameter0.40.81.80.80.31.3
Time in familiar zone, hab. session 10.30.30.60.80.0-0.5
Time in novel zone, hab. session 11.31.33.20.10.71.8
Total zone transitions, hab. session 11.11.63.9-0.5-0.8-2.0
Total locomotion distance, hab. session 12.33.24.3-2.1-1.7-1.5
Locomotion velocity, hab. session 11.72.43.1-1.7-1.4-1.4
Time in familiar zone, hab. session 23.53.64.62.12.11.2
Time in novel zone, hab. session 22.22.23.2-1.8-1.6-0.9
Total zone transitions, hab. session 22.12.76.2-1.0-0.9-2.5
Total locomotion distance, hab. session 22.83.74.1-1.9-2.0-1.8
Locomotion velocity, hab. session 23.34.55.3-2.1-2.3-1.9
Novel to familiar place preference ratio0.20.20.4-0.6-0.30.3
Novelty place preference0.20.20.2-0.4-0.30.5
Time in novel zone, NPP test0.20.20.5-0.30.00.7
Total zone transitions, NPP test2.13.07.2-0.7-1.2-2.7
Total locomotion distance, NPP test1.82.43.5-1.4-1.3-1.9
Locomotion velocity, NPP test3.34.75.7-2.1-2.1-2.4
Intraocular pressure7.510.411.23.13.33.3
Delta distance traveled before/after self-admin0.30.40.8-0.50.10.9
Delta ambulatory time before/after self-admin0.91.02.8-0.30.21.7
Parametrial fat weight0.71.43.1-1.0-0.4-1.8
Pavlov. Cond. lever latency1.31.62.21.01.51.2
Pavlov. Cond. magazine entry latency0.70.91.41.10.41.2
Pavlov. Cond. change in total contacts1.01.11.7-0.4-1.3-1.2
Pavlov. Cond. index score0.20.20.6-0.2-0.8-0.1
Pavlov. Cond. latency score0.20.30.7-0.3-0.9-0.1
Pavlov. Cond. lever contacts2.02.43.3-1.3-1.8-1.4
Pavlov. Cond. magazine entry number0.20.20.5-0.40.2-0.7
Pavlov. Cond. intertrial magazine entries0.70.81.6-1.0-0.1-1.3
Pavlov. Cond. lever-magazine prob. diff.0.10.20.50.1-0.70.2
Pavlov. Cond. response bias0.20.20.7-0.0-0.8-0.1
Pavlov. Cond. lever latency0.60.81.5-1.2-0.8-0.4
Pavlov. Cond. magazine entry latency0.20.20.40.60.2-0.4
Pavlov. Cond. change in total contacts2.12.96.02.51.60.4
Pavlov. Cond. index score0.60.81.61.30.6-0.6
Pavlov. Cond. latency score0.70.91.81.30.7-0.7
Pavlov. Cond. lever contacts0.81.12.11.50.70.9
Pavlov. Cond. magazine entry number1.11.32.2-1.5-1.00.8
Pavlov. Cond. intertrial magazine entries0.40.51.0-1.0-0.7-0.2
Pavlov. Cond. lever-magazine prob. diff.0.60.71.41.20.6-0.7
Pavlov. Cond. response bias1.01.42.51.60.90.9
Time in closed arm before self-admin1.31.53.21.81.20.2
Time in closed arm after self-admin0.20.20.40.6-0.2-0.5
Time in open arm before self-admin0.70.81.5-1.2-0.7-0.5
Time in open arm after self-admin0.60.61.6-0.4-0.31.3
Bone: periosteal estimation0.40.91.71.00.01.3
Bone: periosteal perimeter0.40.61.5-0.6-1.20.2
Bone: post-yield work0.40.51.11.10.30.4
Progressive ratio test 1 active lever presses3.53.74.21.82.01.9
Progressive ratio test 1 breakpoint4.74.95.42.22.32.1
Progressive ratio test 1 inactive lever presses3.23.56.71.51.22.6
Progressive ratio test 2 active lever presses1.41.62.01.41.40.9
Progressive ratio test 2 breakpoint2.12.32.71.61.71.4
Progressive ratio test 2 inactive lever presses3.84.45.02.22.02.1
Incentive Sensitization - Responses0.60.60.70.70.70.8
Incentive Sensitization - Breakpoint0.70.70.70.80.80.8
Sum of active levers in priming session hrs 5-60.50.50.90.90.8-0.3
Progressive ratio1.61.82.5-1.5-1.6-0.9
Food seeking constrained by brief footshock1.51.83.0-1.1-1.1-1.7
Seeking ratio, punishment vs. effort0.20.20.40.20.5-0.6
Retroperitoneal fat weight0.41.22.90.50.7-1.7
Reaction time number correct0.20.20.5-0.4-0.7-0.3
Reaction time mean minus median0.10.10.4-0.00.00.6
Reaction time mean minus median AUC0.00.00.00.20.00.2
Reaction time num false alarms0.30.40.9-0.60.01.0
Reaction time num false alarms AUC0.40.51.4-0.10.41.2
Reaction time trials correct on left0.20.20.5-0.4-0.7-0.3
Reaction time trials on left0.10.20.5-0.3-0.7-0.2
Reaction time mean0.00.10.20.1-0.40.1
Reaction time mean AUC0.00.10.20.2-0.40.0
Median of all reaction times0.10.10.30.1-0.6-0.3
Reaction time omissions1.11.52.01.40.61.4
Reaction time false alarm rate0.60.81.50.30.91.2
Reaction time premature initiation rate0.60.81.2-1.1-0.8-0.7
Reaction time premature initiations0.81.21.7-1.2-1.3-0.7
Std. dev. reaction times0.20.20.60.20.10.8
Reaction time trials completed0.10.20.5-0.3-0.7-0.2
Reaction time trials AUC0.20.30.6-0.4-0.8-0.2
Run reversals in cocaine runway, females0.10.10.20.40.4-0.0
Run reversals in cocaine runway, males0.10.10.20.4-0.0-0.4
Latency to leave start box in cocaine runway0.30.30.5-0.5-0.70.4
Latency to leave start box in cocaine runway, F0.70.81.21.10.90.7
Latency to leave start box in cocaine runway, M1.01.01.5-1.1-1.20.4
Std. dev. time between licks in bursts0.40.51.0-0.6-0.2-1.0
Total sessions with >9 infusions0.60.71.4-0.5-0.6-1.2
Short access day 1 total inactive lever presses1.01.11.11.01.11.1
Short access day 10 total inactive lever presses0.91.01.61.30.90.6
Short access day 1 total infusions0.10.10.2-0.3-0.40.0
Short access day 10 total infusions1.92.22.61.51.61.3
Short access total infusions0.40.50.70.60.80.6
Short access day 1 locomotion0.50.50.80.60.50.9
Short access day 10 total locomotion0.91.01.21.00.91.1
Short access total locomotion0.70.80.90.80.90.9
One hour access (0.3 mA shock)2.63.04.22.02.00.8
Compulsive drug intake3.13.14.6-1.3-1.7-2.1
One hour access (shock baseline)4.14.86.02.22.51.8
Social response proportion4.04.37.1-2.7-2.4-0.1
Social responses2.73.56.3-2.5-1.7-1.1
Social time1.62.23.7-1.6-1.9-0.4
Soleus weight1.44.05.7-2.3-2.4-1.1
Bone: stiffness1.21.92.91.71.11.3
Tibialis anterior weight1.34.65.6-2.4-2.2-1.8
Time to tail flick, vehicle, before self-admin1.81.94.21.00.72.0
Time to tail flick, vehicle, after self-admin0.70.81.90.70.01.4
Time to tail flick, test, before self-admin0.20.10.20.5-0.5-0.0
Time to tail flick, test, after self-admin0.91.01.3-0.5-1.11.2
Delta time to tail flick, vehicle, before/after SA0.30.30.60.80.50.2
Delta time to tail flick, test, before/after SA0.50.40.8-0.9-0.40.6
Tibia length0.20.51.20.41.1-0.3
Ambulatory time before self-admin0.30.30.6-0.8-0.5-0.1
Ambulatory time after self-admin1.61.74.5-0.20.82.1
Bone: tissue strength0.10.10.20.20.20.5
Total heroin consumption0.30.30.70.40.2-0.9
Bone: trabecular number0.30.51.4-0.1-0.4-1.2
Bone: trabecular spacing0.20.30.30.50.6-0.5
Bone: trabecular thickness0.10.20.20.4-0.30.4
Bone: trabecular tissue density0.91.32.9-1.0-1.70.1
Water consumed over 24 hours0.50.61.80.40.0-1.3
Number of responses in last shaping day0.20.30.40.60.0-0.7