LOC102549184

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Brain intron excision ratio chr3_90192793_90199034 0.02 0.02 5.2e-03 0.02 0.02 0.02 0.02 2.7e-03 4.3e-03 2.9e-03 3.3e-03
2 Brain intron excision ratio chr3_90196706_90199034 0.02 0.02 4.7e-03 0.01 0.03 0.01 0 1.5e-02 1.5e-03 3.2e-02 1.5e-01
3 Brain intron excision ratio chr3_90185813_90199034 0.03 0.03 8.6e-04 0.03 0.03 0.03 0.01 1.1e-03 1.8e-03 1.6e-03 4.9e-02
4 Liver gene expression LOC102549184 0.13 0.1 1.7e-15 0.12 0.12 0.13 0.13 3.5e-13 7.5e-13 1.6e-14 3.2e-14

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density0.61.01.1-1.1-0.9-1.01.0
Area under the delay curve0.10.10.30.20.50.3-0.3
BMI with tail0.10.40.6-0.5-0.5-0.80.7
BMI without tail0.61.21.8-0.9-1.0-1.31.2
Body weight0.83.34.4-1.4-1.7-2.11.9
Weight adjusted by age2.63.03.21.81.51.8-1.8
Bone surface0.71.21.5-1.0-0.8-1.21.2
Bone volume1.22.12.5-1.6-1.3-1.41.5
Breakpoint value in progressive ratio session0.80.91.61.30.90.8-0.8
Number of licking bursts0.20.30.5-0.7-0.4-0.40.5
Context. condit. distance diff. score3.34.04.9-2.0-2.2-1.81.9
Locomotion velocity, session 10.20.20.30.30.30.6-0.4
Locomotion distance, session 10.00.10.10.10.30.3-0.2
Locomotion velocity, session 20.00.00.1-0.00.1-0.30.2
Locomotion distance, session 20.20.20.3-0.5-0.4-0.50.5
Locomotion velocity, session 30.00.00.1-0.20.2-0.00.1
Locomotion distance, session 30.10.10.1-0.4-0.2-0.10.2
Stereotopy head waving bouts, day 30.10.10.30.30.50.3-0.2
Stereotopy head waving duration, day 30.50.60.9-0.7-0.6-0.90.9
Locomotion velocity, session 70.00.00.00.1-0.2-0.10.1
Locomotion distance, session 70.40.50.70.80.50.7-0.8
Stereotopy head waving bouts, day 70.10.10.1-0.30.1-0.30.3
Stereotopy head waving duration, day 70.10.10.2-0.20.1-0.50.4
Locomotion velocity, session 80.30.40.7-0.6-0.9-0.40.5
Locomotion distance, session 83.14.55.0-2.1-2.2-2.12.1
Degree of sensitization distance0.20.20.50.70.10.3-0.4
Degree of sensitization stereotypy0.10.10.1-0.10.3-0.30.2
Conditioned locomotion3.74.35.52.02.41.9-2.0
Cocaine response after cond. corrected2.32.63.41.81.81.3-1.5
Cocaine response after cond. not corrected0.30.30.60.80.70.1-0.4
Cocaine response before conditioning7.08.49.2-2.8-2.8-3.02.9
Saline control response0.71.01.1-1.0-0.8-1.11.1
Bone: connectivity density0.71.11.5-1.0-0.8-1.21.1
Bone: cortical apparent density0.00.00.10.20.10.1-0.3
Bone: cortical area0.40.60.9-0.6-0.9-0.90.8
Bone: cortical porosity0.50.60.90.60.70.9-0.8
Bone: cortical porosity0.20.20.30.40.40.6-0.5
Bone: cortical thickness0.10.20.4-0.2-0.4-0.60.4
Bone: cortical thickness2.63.03.81.91.81.5-1.7
Bone: cortical tissue density0.00.00.00.10.0-0.0-0.2
Condit. Reinf. active minus inactive responses1.41.52.0-1.4-1.2-1.11.2
Condit. Reinf. active-inactive response ratio3.13.34.0-2.0-1.9-1.61.8
Condit. Reinf. active responses0.50.60.7-0.9-0.7-0.70.7
Condit. Reinf. inactive responses0.40.40.70.80.80.4-0.6
Incentive salience index mean1.41.72.2-1.5-1.3-1.21.2
Condit. Reinf. lever presses1.21.51.9-1.4-1.3-1.21.1
Condit. Reinf. active minus inactive responses2.02.52.9-1.5-1.6-1.71.6
Condit. Reinf. active-inactive response ratio5.55.76.6-2.2-2.4-2.62.4
Condit. Reinf. active responses1.21.72.0-1.2-1.2-1.41.3
Condit. Reinf. inactive responses0.10.10.10.10.40.3-0.2
Condit. Reinf. lever presses0.91.21.3-1.1-1.1-1.11.1
Condit. Reinf. lever reinforcers received1.11.51.6-1.2-1.2-1.31.2
Conditioned reinforcement - actives5.25.36.3-2.1-2.2-2.52.4
Conditioned reinforcement - inactives9.410.511.7-3.4-3.2-3.23.2
Conditioned locomotion1.62.02.6-1.6-1.3-1.41.3
Patch foraging indifference point 0 sec0.61.01.50.51.21.2-0.9
Patch foraging indifference point AUC0.91.02.01.41.10.6-0.8
Delay disc. indifference point, 0s delay0.00.00.0-0.1-0.1-0.10.1
Delay disc. indifference point, 16s delay1.11.21.31.11.20.9-1.1
Delay disc. indifference point, 2s delay0.00.10.10.30.30.1-0.2
Delay disc. indifference point, 24s delay0.20.20.30.30.50.5-0.3
Delay disc. indifference point, 4s delay0.10.10.20.20.40.3-0.3
Delay disc. indifference point, 8s delay0.30.30.4-0.7-0.3-0.50.6
Indifference point function ln k0.70.91.4-1.2-1.1-0.70.9
Indifference point function log k0.70.91.4-1.2-1.1-0.70.9
Patch foraging total patch changes 0 sec0.50.81.40.41.21.1-0.8
Patch foraging total patch changes 12 sec0.00.00.1-0.1-0.1-0.30.2
Patch foraging total patch changes 18 sec0.40.51.10.81.00.4-0.5
Patch foraging total patch changes 24 sec1.21.52.21.21.51.0-1.1
Patch foraging total patch changes 6 sec0.40.61.10.71.10.7-0.7
Patch foraging time to switch 0 sec0.00.10.10.20.20.2-0.3
Patch foraging water rate 0 sec0.00.00.0-0.10.1-0.20.1
Patch foraging water rate 12 sec0.00.00.10.30.1-0.20.0
Patch foraging water rate 18 sec0.91.21.5-0.9-1.1-1.21.1
Patch foraging water rate 24 sec0.00.10.10.0-0.4-0.30.1
Patch foraging water rate 6 sec0.00.00.0-0.1-0.00.00.0
Seeking ratio, delayed vs. immediate footshock0.20.20.3-0.6-0.6-0.40.3
Distance traveled before self-admin0.40.40.8-0.6-0.9-0.60.6
Distance traveled after self-admin0.80.91.4-0.5-1.2-1.00.9
Extensor digitorum longus weight0.20.81.21.11.00.7-0.8
Bone: elastic displacement1.11.31.91.41.11.0-1.1
Bone: elastic work1.11.42.01.41.01.1-1.1
Bone: endosteal estimation0.30.60.80.90.70.8-0.7
Bone: endosteal perimeter0.20.40.5-0.7-0.7-0.40.6
Epididymis fat weight0.71.72.1-1.4-1.4-1.21.2
Delta time in closed arm before/after self-admin0.10.10.20.30.10.5-0.1
Delta time in open arm before/after self-admin0.30.30.50.20.70.5-0.7
Diff in mean of infusions in LGA sessions0.00.00.10.30.10.1-0.1
Delay discount exponential model param0.20.20.4-0.3-0.6-0.40.4
Extinction: sum of active levers before priming0.10.10.20.0-0.4-0.20.3
Active lever presses in extinction session 60.10.10.2-0.3-0.5-0.30.3
Bone: final force0.00.00.10.2-0.3-0.10.1
Bone: final moment0.10.10.30.60.00.2-0.3
Food consumed during 24 hour testing period7.69.29.6-2.9-3.1-3.03.1
Glucose2.33.54.1-1.7-2.0-1.91.8
Heart weight0.30.50.90.30.21.0-0.9
Delay discount hyperbolic model param0.10.10.2-0.2-0.5-0.30.3
Intermittent access intake day 1-15 change0.20.20.3-0.6-0.3-0.40.2
Intermittent access intake escalation0.50.50.7-0.8-0.6-0.70.6
Intermittent access intake escalation 22.92.93.2-1.8-1.7-1.71.6
Intermitt. access day 1 inactive lever presses0.10.10.20.3-0.50.10.1
Intermitt. access day 15 inactive lever presses2.83.03.6-1.8-1.9-1.61.7
Intermitt. access escalation Index0.90.81.1-0.8-0.7-1.10.9
Intermittent access day 1 total infusions3.33.94.3-2.0-1.7-2.12.0
Intermittent access day 15 total infusions5.05.66.5-2.6-2.1-2.52.3
Intermittent access terminal intake (last 3 days)7.37.98.8-3.0-2.6-2.92.8
Intermittent access total infusions7.17.99.0-3.0-2.5-2.92.8
Intermittent access day 1 locomotion1.21.31.7-1.3-0.9-1.21.1
Intermittent access day 15 total locomotion0.70.81.3-1.1-0.6-0.90.8
Intermittent access total locomotion1.51.72.7-1.6-1.1-1.31.2
Intermittent access standard deviation5.65.96.3-2.5-2.3-2.42.4
Left kidney weight0.61.72.5-0.8-1.6-1.41.3
Right kidney weight0.31.01.6-0.7-1.3-1.00.9
Cocaine induced anxiety0.40.50.9-0.6-0.9-0.50.6
Post-drug Anxiety0.00.00.0-0.1-0.1-0.00.0
Baseline Anxiety3.03.24.11.72.01.7-1.7
Tail length0.72.02.8-1.0-1.5-1.71.5
Length with tail0.72.63.5-1.2-1.6-1.91.7
Length without tail0.30.60.7-0.7-0.8-0.80.8
Times rat made contact with spout0.10.10.2-0.4-0.3-0.20.3
Lifetime Intake7.58.59.6-3.1-2.7-3.02.9
Liver weight, left0.61.01.6-0.5-1.0-1.21.1
Liver weight, right1.62.63.8-1.3-1.9-1.71.5
Locomotor activity0.00.10.2-0.4-0.1-0.10.3
Locomotor testing distance1.42.32.6-1.6-1.4-1.51.5
Locomotor testing rearing0.20.30.4-0.6-0.6-0.60.6
Locomotion in novel chamber0.30.40.7-0.8-0.5-0.70.5
Locomotion in novel chamber post-restriction0.91.11.21.11.11.0-1.1
Fecal boli incidents, locomotor time 15.96.48.93.02.52.3-2.4
Change in fecal boli incidents, locomotor task4.44.25.3-2.3-1.8-2.02.0
Time >=10cm from walls, locomotor time 10.00.00.10.30.1-0.1-0.0
Bouts of movement, locomotor time 10.20.30.50.70.50.3-0.5
Total resting periods, locomotor time 10.20.20.50.70.30.2-0.4
Rest time, locomotor task time 10.10.10.50.70.1-0.10.1
Distance moved, locomotor task time 11.61.72.6-1.6-1.3-1.11.1
Vertical activity count, locomotor time 10.10.10.4-0.6-0.10.0-0.1
Time >=10cm from walls, locomotor time 26.97.37.4-2.7-2.7-2.72.7
Bouts of movement, locomotor time 20.20.20.40.50.20.6-0.6
Total resting periods, locomotor time 20.20.20.30.40.10.4-0.5
Rest time, locomotor task time 21.92.22.71.71.51.3-1.4
Distance moved, locomotor task time 25.26.06.2-2.5-2.5-2.42.5
Vertical activity count, locomotor time 22.42.63.0-1.7-1.7-1.51.5
Light reinforcement 10.20.30.4-0.2-0.6-0.60.6
Light reinforcement 20.10.10.20.2-0.5-0.20.2
Bone: marrow area0.30.60.80.90.70.8-0.7
Bone: maximum diameter0.20.40.8-0.6-0.9-0.50.6
Bone: maximum force0.00.10.1-0.1-0.3-0.30.3
Bone: maximum moment0.00.10.20.40.10.1-0.1
Mean time between licks in bursts1.01.41.81.11.31.2-1.2
Mean num. licks in bursts0.00.00.00.20.00.1-0.0
Cd content in liver1.01.11.5-1.2-1.1-0.91.0
Co content in liver1.11.31.81.11.31.0-1.1
Cu content in liver0.20.20.30.50.50.4-0.5
Fe content in liver0.40.40.50.70.70.6-0.6
K content in liver3.13.13.41.71.71.8-1.8
Mg content in liver1.61.72.11.41.31.2-1.3
Mn content in liver1.72.02.41.61.21.4-1.4
Na content in liver0.00.00.10.3-0.0-0.1-0.0
Rb content in liver1.11.31.81.31.21.0-1.1
Se content in liver3.24.05.01.92.21.9-1.9
Sr content in liver0.10.10.10.30.30.3-0.3
Zn content in liver0.10.10.10.40.30.3-0.3
Bone: minimum diameter0.91.72.1-1.1-1.3-1.41.4
Time in familiar zone, hab. session 10.80.70.80.80.80.9-0.9
Time in novel zone, hab. session 11.31.31.4-1.1-1.1-1.11.2
Total zone transitions, hab. session 11.52.12.9-1.7-1.4-1.31.5
Total locomotion distance, hab. session 10.30.41.0-1.0-0.3-0.30.6
Locomotion velocity, hab. session 10.10.20.5-0.7-0.0-0.10.3
Time in familiar zone, hab. session 20.20.20.40.10.40.6-0.5
Time in novel zone, hab. session 20.50.50.7-0.3-0.7-0.90.7
Total zone transitions, hab. session 21.62.12.4-1.4-1.3-1.51.5
Total locomotion distance, hab. session 20.10.10.10.10.40.3-0.3
Locomotion velocity, hab. session 20.10.10.20.10.50.4-0.3
Novel to familiar place preference ratio0.50.50.8-0.9-0.8-0.50.6
Novelty place preference0.60.60.8-0.9-0.9-0.50.6
Time in novel zone, NPP test0.40.40.6-0.8-0.8-0.40.5
Total zone transitions, NPP test0.50.81.20.71.10.9-0.8
Total locomotion distance, NPP test0.81.11.60.81.21.1-1.0
Locomotion velocity, NPP test0.71.01.50.71.21.0-0.9
Intraocular pressure0.10.10.3-0.00.20.5-0.3
Delta distance traveled before/after self-admin0.10.10.40.60.1-0.00.1
Delta ambulatory time before/after self-admin0.10.10.10.4-0.2-0.20.2
Parametrial fat weight0.91.82.7-1.1-1.1-1.61.4
Pavlov. Cond. lever latency0.40.60.80.90.70.7-0.7
Pavlov. Cond. magazine entry latency0.91.21.8-1.0-1.3-1.01.0
Pavlov. Cond. change in total contacts0.30.30.50.40.40.7-0.6
Pavlov. Cond. index score0.20.20.4-0.5-0.6-0.40.4
Pavlov. Cond. latency score0.20.20.4-0.5-0.6-0.40.4
Pavlov. Cond. lever contacts0.40.40.6-0.7-0.8-0.60.6
Pavlov. Cond. magazine entry number0.91.11.51.01.21.0-0.9
Pavlov. Cond. intertrial magazine entries0.00.00.10.10.30.2-0.2
Pavlov. Cond. lever-magazine prob. diff.0.10.20.3-0.5-0.5-0.30.3
Pavlov. Cond. response bias0.91.11.5-1.0-1.2-1.11.0
Pavlov. Cond. lever latency2.43.23.81.91.81.6-1.7
Pavlov. Cond. magazine entry latency0.60.71.2-1.1-0.9-0.60.7
Pavlov. Cond. change in total contacts1.21.62.0-1.4-1.2-1.21.2
Pavlov. Cond. index score1.92.43.2-1.8-1.6-1.31.5
Pavlov. Cond. latency score2.32.93.8-1.9-1.7-1.51.6
Pavlov. Cond. lever contacts2.63.64.7-2.2-1.9-1.71.8
Pavlov. Cond. magazine entry number0.30.40.70.80.70.3-0.4
Pavlov. Cond. intertrial magazine entries0.00.00.10.30.10.0-0.1
Pavlov. Cond. lever-magazine prob. diff.1.72.22.8-1.7-1.5-1.31.4
Pavlov. Cond. response bias1.92.63.3-1.8-1.8-1.31.5
Time in closed arm before self-admin2.83.13.6-1.8-1.8-1.91.6
Time in closed arm after self-admin0.80.91.0-0.9-1.0-0.90.9
Time in open arm before self-admin1.81.92.61.41.61.4-1.1
Time in open arm after self-admin3.13.44.31.62.11.9-1.8
Bone: periosteal estimation0.00.00.10.3-0.0-0.0-0.0
Bone: periosteal perimeter1.11.82.0-1.3-1.4-1.31.3
Bone: post-yield work0.00.00.1-0.10.20.3-0.1
Progressive ratio test 1 active lever presses4.04.14.6-2.2-1.9-2.02.0
Progressive ratio test 1 breakpoint3.83.94.3-2.1-1.9-2.02.0
Progressive ratio test 1 inactive lever presses2.02.12.5-1.5-1.6-1.41.4
Progressive ratio test 2 active lever presses3.03.23.7-1.9-1.7-1.81.7
Progressive ratio test 2 breakpoint3.74.14.7-2.2-2.0-2.01.9
Progressive ratio test 2 inactive lever presses3.94.65.4-2.3-2.1-2.02.0
Incentive Sensitization - Responses1.31.31.5-1.2-1.1-1.21.1
Incentive Sensitization - Breakpoint1.01.11.2-1.1-1.0-1.00.9
Sum of active levers in priming session hrs 5-60.90.81.51.20.50.9-0.9
Progressive ratio0.30.40.7-0.7-0.8-0.40.5
Food seeking constrained by brief footshock1.01.21.4-1.2-1.0-1.11.0
Seeking ratio, punishment vs. effort0.20.30.50.40.70.4-0.5
Retroperitoneal fat weight8.527.930.0-5.5-5.4-5.15.2
Reaction time number correct0.10.10.3-0.1-0.2-0.60.5
Reaction time mean minus median0.10.10.2-0.3-0.4-0.40.3
Reaction time mean minus median AUC0.10.10.2-0.2-0.4-0.40.4
Reaction time num false alarms1.41.92.11.51.41.4-1.2
Reaction time num false alarms AUC1.82.42.81.71.61.5-1.4
Reaction time trials correct on left0.10.10.3-0.1-0.2-0.60.5
Reaction time trials on left0.10.10.20.0-0.1-0.50.3
Reaction time mean0.20.30.5-0.5-0.7-0.70.5
Reaction time mean AUC0.40.60.8-0.6-0.9-0.80.7
Median of all reaction times0.50.71.0-0.7-0.9-1.00.7
Reaction time omissions1.41.92.21.51.31.4-1.4
Reaction time false alarm rate2.73.84.21.92.02.0-1.9
Reaction time premature initiation rate0.10.20.30.30.20.5-0.5
Reaction time premature initiations0.00.00.10.20.10.1-0.2
Std. dev. reaction times0.00.00.1-0.0-0.2-0.1-0.0
Reaction time trials completed0.10.10.20.0-0.1-0.50.3
Reaction time trials AUC0.20.20.5-0.2-0.3-0.70.6
Run reversals in cocaine runway, females0.30.30.4-0.3-0.6-0.50.6
Run reversals in cocaine runway, males5.55.36.62.32.12.2-2.6
Latency to leave start box in cocaine runway0.60.71.40.40.61.2-0.8
Latency to leave start box in cocaine runway, F0.70.71.60.20.61.3-1.0
Latency to leave start box in cocaine runway, M0.20.10.20.50.30.5-0.2
Std. dev. time between licks in bursts0.20.30.40.50.30.6-0.7
Total sessions with >9 infusions2.73.03.4-1.8-1.6-1.81.7
Short access day 1 total inactive lever presses0.91.01.4-1.2-0.8-0.91.0
Short access day 10 total inactive lever presses0.10.10.5-0.1-0.70.00.2
Short access day 1 total infusions10.411.111.5-3.4-3.2-3.43.4
Short access day 10 total infusions3.74.15.5-2.3-1.7-2.12.0
Short access total infusions6.16.97.7-2.8-2.4-2.72.6
Short access day 1 locomotion3.74.05.1-2.3-1.7-2.02.0
Short access day 10 total locomotion2.22.43.3-1.8-1.5-1.41.4
Short access total locomotion2.82.93.9-2.0-1.6-1.71.6
One hour access (0.3 mA shock)2.73.13.8-1.9-1.7-1.71.6
Compulsive drug intake2.02.02.21.41.31.5-1.5
One hour access (shock baseline)6.17.17.7-2.8-2.5-2.72.6
Social response proportion3.74.04.82.21.91.8-2.1
Social responses0.10.10.2-0.2-0.4-0.10.1
Social time2.02.63.31.51.81.5-1.6
Soleus weight1.85.25.32.32.32.3-2.2
Bone: stiffness0.30.60.9-0.7-1.0-0.60.7
Tibialis anterior weight2.37.89.83.12.92.5-2.7
Time to tail flick, vehicle, before self-admin2.82.93.7-1.9-1.5-1.51.7
Time to tail flick, vehicle, after self-admin4.85.25.6-2.3-2.1-2.32.4
Time to tail flick, test, before self-admin1.41.41.7-1.3-1.2-1.11.2
Time to tail flick, test, after self-admin1.92.02.6-1.6-1.3-1.31.3
Delta time to tail flick, vehicle, before/after SA0.10.10.2-0.3-0.3-0.50.4
Delta time to tail flick, test, before/after SA0.00.00.0-0.10.2-0.2-0.1
Tibia length0.00.10.50.70.1-0.1-0.1
Ambulatory time before self-admin0.40.40.6-0.4-0.8-0.70.6
Ambulatory time after self-admin1.21.42.4-0.6-1.5-1.21.1
Bone: tissue strength0.30.30.60.40.50.8-0.5
Total heroin consumption1.11.31.91.41.01.0-1.1
Bone: trabecular number0.61.01.1-1.0-0.8-1.01.0
Bone: trabecular spacing0.10.10.2-0.3-0.4-0.30.3
Bone: trabecular thickness0.20.20.2-0.4-0.5-0.50.5
Bone: trabecular tissue density1.72.42.81.51.31.7-1.6
Water consumed over 24 hours0.20.30.4-0.5-0.6-0.40.5
Number of responses in last shaping day2.42.52.6-1.6-1.6-1.61.5