LOC102547455

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 PL gene expression LOC102547455 0.05 0.03 7.2e-04 0.03 0.02 0.02 0.02 2.5e-04 1.8e-03 2.4e-03 1.8e-03
2 OFC gene expression LOC102547455 0.32 0.15 2.1e-03 0.07 0.11 0.11 0.11 7.7e-03 1.6e-03 1.2e-03 1.4e-03
3 Brain gene expression LOC102547455 0.04 0.03 7.9e-03 0.02 0.01 0 0.02 2.6e-03 1.4e-02 1.9e-01 7.4e-03

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
Bone: apparent density1.01.74.12.0-0.2-1.0
Area under the delay curve2.72.84.00.92.01.9
BMI with tail0.51.64.3-2.1-0.50.5
BMI without tail0.00.00.00.20.2-0.2
Body weight0.10.30.4-0.5-0.7-0.3
Weight adjusted by age2.63.04.3-1.7-2.1-1.3
Bone surface0.10.30.50.7-0.2-0.5
Bone volume0.61.02.31.5-0.1-0.8
Breakpoint value in progressive ratio session0.20.20.20.50.40.4
Number of licking bursts0.60.71.00.91.00.4
Context. condit. distance diff. score0.60.71.70.6-0.4-1.3
Locomotion velocity, session 10.00.00.00.20.2-0.1
Locomotion distance, session 11.11.42.7-1.6-1.1-0.4
Locomotion velocity, session 21.41.64.4-2.1-0.6-0.1
Locomotion distance, session 20.71.02.8-1.7-0.30.5
Locomotion velocity, session 30.20.30.4-0.4-0.7-0.5
Locomotion distance, session 30.00.00.0-0.1-0.20.0
Stereotopy head waving bouts, day 30.30.40.70.80.60.3
Stereotopy head waving duration, day 30.40.50.60.70.80.6
Locomotion velocity, session 72.62.93.8-2.0-1.6-1.4
Locomotion distance, session 70.50.61.2-1.1-0.4-0.7
Stereotopy head waving bouts, day 70.00.10.10.30.20.1
Stereotopy head waving duration, day 70.40.40.7-0.2-0.8-0.8
Locomotion velocity, session 82.42.94.0-1.2-1.8-2.0
Locomotion distance, session 81.52.22.7-1.4-1.5-1.6
Degree of sensitization distance0.20.20.4-0.70.40.1
Degree of sensitization stereotypy0.10.20.3-0.1-0.5-0.5
Conditioned locomotion0.91.02.11.40.80.5
Cocaine response after cond. corrected1.01.21.80.41.41.2
Cocaine response after cond. not corrected0.50.51.00.00.81.0
Cocaine response before conditioning1.31.62.6-1.3-1.6-0.6
Saline control response0.91.11.6-1.0-1.3-1.0
Bone: connectivity density0.40.61.61.30.2-0.1
Bone: cortical apparent density4.05.39.7-3.1-2.2-1.2
Bone: cortical area0.10.20.3-0.4-0.5-0.4
Bone: cortical porosity0.30.30.70.90.1-0.4
Bone: cortical porosity0.50.51.00.7-0.3-1.0
Bone: cortical thickness0.20.40.5-0.5-0.7-0.6
Bone: cortical thickness0.10.10.40.0-0.3-0.6
Bone: cortical tissue density4.05.39.6-3.1-2.2-1.3
Condit. Reinf. active minus inactive responses1.21.42.20.51.31.5
Condit. Reinf. active-inactive response ratio1.11.21.80.71.11.3
Condit. Reinf. active responses0.30.40.60.10.80.7
Condit. Reinf. inactive responses0.30.30.9-0.9-0.3-0.2
Incentive salience index mean0.20.20.30.30.60.5
Condit. Reinf. lever presses0.40.50.9-0.2-0.8-1.0
Condit. Reinf. active minus inactive responses1.01.21.41.11.21.0
Condit. Reinf. active-inactive response ratio1.51.52.81.71.10.8
Condit. Reinf. active responses0.50.61.00.41.00.9
Condit. Reinf. inactive responses0.60.81.9-1.4-0.5-0.4
Condit. Reinf. lever presses0.20.20.30.40.40.6
Condit. Reinf. lever reinforcers received0.70.91.40.31.11.2
Conditioned reinforcement - actives0.70.71.10.41.01.0
Conditioned reinforcement - inactives0.10.10.2-0.4-0.1-0.1
Conditioned locomotion0.30.41.1-1.1-0.30.0
Patch foraging indifference point 0 sec1.22.03.2-1.8-1.5-0.7
Patch foraging indifference point AUC0.30.40.9-0.40.40.9
Delay disc. indifference point, 0s delay1.11.22.0-1.4-1.0-0.6
Delay disc. indifference point, 16s delay3.33.44.51.82.11.5
Delay disc. indifference point, 2s delay0.80.91.50.11.11.2
Delay disc. indifference point, 24s delay0.30.30.40.40.60.5
Delay disc. indifference point, 4s delay0.10.10.1-0.40.20.2
Delay disc. indifference point, 8s delay1.81.92.50.81.61.6
Indifference point function ln k0.30.41.1-1.0-0.0-0.2
Indifference point function log k0.30.41.1-1.0-0.0-0.2
Patch foraging total patch changes 0 sec0.81.22.5-1.6-1.1-0.3
Patch foraging total patch changes 12 sec1.21.52.4-1.1-1.5-1.0
Patch foraging total patch changes 18 sec0.40.61.1-0.80.01.0
Patch foraging total patch changes 24 sec1.11.41.9-1.4-1.3-0.7
Patch foraging total patch changes 6 sec0.40.61.1-1.0-0.90.2
Patch foraging time to switch 0 sec0.30.40.70.4-0.7-0.8
Patch foraging water rate 0 sec0.81.22.30.11.11.5
Patch foraging water rate 12 sec0.40.50.80.20.90.9
Patch foraging water rate 18 sec0.10.10.2-0.10.20.4
Patch foraging water rate 24 sec0.10.10.20.00.40.5
Patch foraging water rate 6 sec0.60.91.50.31.01.2
Seeking ratio, delayed vs. immediate footshock0.20.30.60.7-0.1-0.5
Distance traveled before self-admin0.20.20.60.3-0.2-0.8
Distance traveled after self-admin1.41.62.40.2-1.5-1.5
Extensor digitorum longus weight2.710.728.6-5.3-1.80.6
Bone: elastic displacement1.11.21.71.31.20.7
Bone: elastic work0.40.51.11.10.4-0.5
Bone: endosteal estimation0.00.10.10.40.40.1
Bone: endosteal perimeter0.00.10.10.30.30.3
Epididymis fat weight0.00.10.2-0.3-0.10.5
Delta time in closed arm before/after self-admin0.00.00.1-0.3-0.20.2
Delta time in open arm before/after self-admin0.60.61.51.20.4-0.4
Diff in mean of infusions in LGA sessions0.80.91.61.30.90.4
Delay discount exponential model param2.93.04.3-1.0-2.1-1.9
Extinction: sum of active levers before priming1.01.01.91.40.90.3
Active lever presses in extinction session 62.32.23.50.61.71.9
Bone: final force0.71.11.4-0.8-1.2-1.1
Bone: final moment0.61.01.1-0.9-1.0-1.0
Food consumed during 24 hour testing period0.10.10.2-0.50.20.3
Glucose0.71.11.51.21.00.8
Heart weight0.30.40.8-0.50.40.9
Delay discount hyperbolic model param2.22.43.4-0.7-1.9-1.8
Intermittent access intake day 1-15 change0.20.20.3-0.6-0.3-0.4
Intermittent access intake escalation0.10.10.1-0.2-0.1-0.4
Intermittent access intake escalation 20.00.00.00.10.2-0.1
Intermitt. access day 1 inactive lever presses0.30.40.70.3-0.6-0.8
Intermitt. access day 15 inactive lever presses0.50.60.8-0.5-0.9-0.8
Intermitt. access escalation Index0.10.10.30.1-0.1-0.6
Intermittent access day 1 total infusions2.42.73.71.11.81.9
Intermittent access day 15 total infusions1.01.11.60.61.31.1
Intermittent access terminal intake (last 3 days)0.91.01.60.31.21.3
Intermittent access total infusions1.82.02.70.91.61.6
Intermittent access day 1 locomotion0.00.00.10.10.30.2
Intermittent access day 15 total locomotion0.10.10.4-0.60.10.2
Intermittent access total locomotion0.10.10.1-0.30.20.3
Intermittent access standard deviation0.70.81.11.01.00.6
Left kidney weight0.20.71.1-1.0-0.9-0.3
Right kidney weight1.74.86.6-1.9-2.6-2.1
Cocaine induced anxiety2.62.94.7-2.2-1.9-0.7
Post-drug Anxiety0.40.40.9-0.9-0.50.3
Baseline Anxiety3.73.94.52.02.11.8
Tail length0.41.12.91.70.7-0.0
Length with tail0.10.30.50.7-0.4-0.5
Length without tail0.81.82.7-1.6-1.6-0.6
Times rat made contact with spout2.63.03.81.82.01.4
Lifetime Intake1.61.82.50.71.61.6
Liver weight, left0.10.20.3-0.1-0.4-0.6
Liver weight, right0.10.20.40.60.10.4
Locomotor activity0.10.20.20.40.50.3
Locomotor testing distance0.20.41.01.00.1-0.2
Locomotor testing rearing0.30.50.70.7-0.4-0.9
Locomotion in novel chamber2.02.46.7-2.6-0.50.6
Locomotion in novel chamber post-restriction0.50.71.9-1.4-0.10.1
Fecal boli incidents, locomotor time 10.50.61.0-0.40.71.0
Change in fecal boli incidents, locomotor task0.10.10.10.0-0.2-0.3
Time >=10cm from walls, locomotor time 10.90.92.5-1.6-0.20.3
Bouts of movement, locomotor time 14.04.39.1-0.31.93.0
Total resting periods, locomotor time 13.03.37.1-0.61.62.7
Rest time, locomotor task time 13.23.54.41.42.02.1
Distance moved, locomotor task time 10.40.50.8-0.9-0.7-0.4
Vertical activity count, locomotor time 11.11.11.7-0.4-1.2-1.3
Time >=10cm from walls, locomotor time 20.10.10.20.10.40.3
Bouts of movement, locomotor time 20.80.92.0-0.70.31.4
Total resting periods, locomotor time 20.70.81.6-0.80.21.3
Rest time, locomotor task time 20.40.50.60.70.60.8
Distance moved, locomotor task time 20.20.20.6-0.80.20.3
Vertical activity count, locomotor time 20.40.40.7-0.8-0.6-0.5
Light reinforcement 11.73.07.4-2.7-1.3-0.2
Light reinforcement 20.30.41.2-1.1-0.30.2
Bone: marrow area0.00.10.10.30.30.1
Bone: maximum diameter0.00.00.10.3-0.0-0.2
Bone: maximum force0.40.71.0-0.6-0.9-1.0
Bone: maximum moment0.40.70.9-0.7-0.8-0.9
Mean time between licks in bursts1.41.93.9-2.0-1.1-0.8
Mean num. licks in bursts0.10.10.3-0.20.10.5
Cd content in liver0.30.30.6-0.0-0.6-0.8
Co content in liver0.10.10.30.50.1-0.2
Cu content in liver0.20.20.50.70.3-0.1
Fe content in liver0.91.12.11.5-0.3-1.1
K content in liver0.60.61.0-1.0-0.8-0.5
Mg content in liver0.50.50.6-0.6-0.7-0.8
Mn content in liver0.50.60.7-0.8-0.8-0.5
Na content in liver1.21.22.7-0.1-1.0-1.6
Rb content in liver0.60.81.3-1.1-0.01.1
Se content in liver0.00.00.1-0.2-0.10.2
Sr content in liver0.60.61.00.31.00.8
Zn content in liver0.00.10.1-0.4-0.1-0.1
Bone: minimum diameter0.30.50.8-0.9-0.7-0.5
Time in familiar zone, hab. session 12.72.52.91.61.71.5
Time in novel zone, hab. session 10.10.10.10.4-0.0-0.3
Total zone transitions, hab. session 12.53.54.2-1.5-2.1-2.0
Total locomotion distance, hab. session 10.60.92.0-1.4-0.8-0.3
Locomotion velocity, hab. session 11.11.62.7-1.6-1.2-0.8
Time in familiar zone, hab. session 20.20.30.40.70.40.4
Time in novel zone, hab. session 20.00.00.00.1-0.0-0.1
Total zone transitions, hab. session 20.10.10.3-0.5-0.20.2
Total locomotion distance, hab. session 20.70.91.7-0.80.61.3
Locomotion velocity, hab. session 20.50.61.0-1.00.20.9
Novel to familiar place preference ratio2.72.74.01.52.01.4
Novelty place preference2.62.63.81.62.01.3
Time in novel zone, NPP test3.23.24.51.82.11.4
Total zone transitions, NPP test0.50.71.6-1.3-0.7-0.2
Total locomotion distance, NPP test0.40.51.1-1.10.00.6
Locomotion velocity, NPP test0.71.02.6-1.6-0.50.2
Intraocular pressure0.50.61.4-1.20.30.7
Delta distance traveled before/after self-admin0.70.81.4-0.6-1.2-0.7
Delta ambulatory time before/after self-admin0.50.61.1-0.6-1.1-0.5
Parametrial fat weight0.00.10.10.2-0.0-0.4
Pavlov. Cond. lever latency0.50.61.10.10.81.1
Pavlov. Cond. magazine entry latency0.00.00.10.20.00.3
Pavlov. Cond. change in total contacts0.10.10.20.10.40.1
Pavlov. Cond. index score0.10.10.30.60.2-0.0
Pavlov. Cond. latency score0.10.10.20.5-0.0-0.3
Pavlov. Cond. lever contacts0.20.20.5-0.0-0.5-0.7
Pavlov. Cond. magazine entry number0.50.61.1-1.0-0.5-0.6
Pavlov. Cond. intertrial magazine entries0.20.30.70.10.90.3
Pavlov. Cond. lever-magazine prob. diff.0.10.10.20.40.30.2
Pavlov. Cond. response bias0.10.10.20.40.10.0
Pavlov. Cond. lever latency0.00.00.1-0.10.30.0
Pavlov. Cond. magazine entry latency1.41.62.8-0.9-1.7-1.1
Pavlov. Cond. change in total contacts0.10.10.30.60.2-0.1
Pavlov. Cond. index score0.10.10.3-0.0-0.6-0.3
Pavlov. Cond. latency score0.10.10.3-0.2-0.6-0.2
Pavlov. Cond. lever contacts0.00.10.10.4-0.2-0.1
Pavlov. Cond. magazine entry number0.50.61.10.31.10.8
Pavlov. Cond. intertrial magazine entries0.91.21.8-1.20.61.3
Pavlov. Cond. lever-magazine prob. diff.0.20.20.5-0.2-0.7-0.4
Pavlov. Cond. response bias0.60.81.4-0.2-1.2-1.0
Time in closed arm before self-admin2.73.03.71.81.91.5
Time in closed arm after self-admin0.10.10.20.50.10.0
Time in open arm before self-admin0.50.61.3-1.2-0.60.2
Time in open arm after self-admin0.30.30.60.6-0.2-0.8
Bone: periosteal estimation0.00.00.10.2-0.1-0.3
Bone: periosteal perimeter0.10.20.30.40.50.5
Bone: post-yield work0.91.31.7-0.7-1.3-1.3
Progressive ratio test 1 active lever presses0.60.61.3-0.40.51.2
Progressive ratio test 1 breakpoint0.60.61.4-0.30.61.2
Progressive ratio test 1 inactive lever presses0.40.40.7-0.3-0.8-0.6
Progressive ratio test 2 active lever presses0.00.10.1-0.3-0.1-0.1
Progressive ratio test 2 breakpoint0.10.10.4-0.6-0.2-0.0
Progressive ratio test 2 inactive lever presses0.60.71.0-0.6-0.8-1.0
Incentive Sensitization - Responses0.80.81.3-0.6-0.9-1.1
Incentive Sensitization - Breakpoint1.21.21.7-0.9-1.1-1.3
Sum of active levers in priming session hrs 5-62.62.53.11.31.81.6
Progressive ratio1.41.73.2-0.11.41.8
Food seeking constrained by brief footshock0.20.30.7-0.2-0.10.9
Seeking ratio, punishment vs. effort0.50.71.2-0.1-1.1-0.9
Retroperitoneal fat weight0.61.92.2-1.5-1.5-1.1
Reaction time number correct0.40.61.7-1.3-0.3-0.1
Reaction time mean minus median0.50.61.31.10.70.5
Reaction time mean minus median AUC0.20.30.60.80.40.3
Reaction time num false alarms0.81.12.8-1.7-0.30.7
Reaction time num false alarms AUC1.11.54.0-2.0-0.50.5
Reaction time trials correct on left0.40.61.7-1.3-0.3-0.1
Reaction time trials on left0.40.61.6-1.3-0.3-0.1
Reaction time mean1.31.83.81.91.10.4
Reaction time mean AUC1.21.63.01.71.20.5
Median of all reaction times1.31.84.02.01.20.4
Reaction time omissions0.20.30.40.60.2-0.6
Reaction time false alarm rate0.40.61.4-1.2-0.40.4
Reaction time premature initiation rate0.00.00.10.2-0.30.1
Reaction time premature initiations0.10.10.2-0.4-0.30.1
Std. dev. reaction times0.50.81.81.30.70.1
Reaction time trials completed0.40.61.6-1.3-0.3-0.1
Reaction time trials AUC0.30.51.4-1.2-0.2-0.1
Run reversals in cocaine runway, females0.40.40.8-0.9-0.7-0.2
Run reversals in cocaine runway, males0.40.30.6-0.8-0.10.6
Latency to leave start box in cocaine runway2.32.54.0-2.0-1.5-1.1
Latency to leave start box in cocaine runway, F2.42.63.5-1.3-1.9-1.6
Latency to leave start box in cocaine runway, M1.31.23.3-1.8-0.00.6
Std. dev. time between licks in bursts0.10.10.2-0.40.40.2
Total sessions with >9 infusions0.70.81.5-0.70.61.2
Short access day 1 total inactive lever presses1.31.41.7-1.3-1.3-1.0
Short access day 10 total inactive lever presses1.01.11.9-0.3-1.2-1.4
Short access day 1 total infusions0.50.51.3-1.1-0.20.4
Short access day 10 total infusions4.65.27.51.22.52.7
Short access total infusions1.21.32.40.01.21.6
Short access day 1 locomotion0.10.10.2-0.40.40.3
Short access day 10 total locomotion0.00.00.00.20.2-0.0
Short access total locomotion0.10.10.3-0.5-0.1-0.1
One hour access (0.3 mA shock)4.65.47.52.22.72.0
Compulsive drug intake0.20.20.60.80.3-0.1
One hour access (shock baseline)2.32.64.01.22.01.6
Social response proportion0.20.20.40.70.50.3
Social responses0.50.71.71.30.60.2
Social time1.11.54.02.00.4-0.6
Soleus weight0.82.55.6-2.4-1.3-0.5
Bone: stiffness1.11.82.2-1.1-1.5-1.4
Tibialis anterior weight1.55.213.6-3.7-1.40.4
Time to tail flick, vehicle, before self-admin0.20.20.50.70.4-0.0
Time to tail flick, vehicle, after self-admin0.40.50.90.90.80.1
Time to tail flick, test, before self-admin0.80.81.2-0.90.51.1
Time to tail flick, test, after self-admin0.30.30.5-0.10.60.7
Delta time to tail flick, vehicle, before/after SA0.00.00.0-0.10.1-0.1
Delta time to tail flick, test, before/after SA0.80.71.71.30.6-0.0
Tibia length0.30.92.10.4-0.7-1.4
Ambulatory time before self-admin0.20.20.50.20.0-0.7
Ambulatory time after self-admin1.61.82.9-0.9-1.7-1.3
Bone: tissue strength0.20.20.4-0.6-0.3-0.3
Total heroin consumption1.82.12.31.31.51.5
Bone: trabecular number1.01.52.71.6-0.5-1.3
Bone: trabecular spacing0.81.02.6-1.6-0.50.3
Bone: trabecular thickness1.61.95.32.30.5-0.6
Bone: trabecular tissue density0.60.81.2-0.8-1.1-0.8
Water consumed over 24 hours0.20.20.40.10.40.6
Number of responses in last shaping day0.00.00.00.1-0.2-0.2