LOC102547254

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Adipose gene expression LOC102547254 0.06 0.05 2.9e-07 0.05 0.06 0.05 0.05 5.0e-06 9.8e-07 3.7e-06 1.6e-06
2 Brain gene expression LOC102547254 0.03 0.02 3.5e-04 0.03 0.03 0.02 0.03 4.0e-04 6.8e-04 1.0e-02 1.4e-03
3 NAcc gene expression LOC102547254 0.03 0.02 3.9e-04 0.02 0.02 0.02 0.01 5.0e-04 7.2e-04 1.6e-03 6.7e-03
4 PL gene expression LOC102547254 0.06 0.04 1.0e-07 0.04 0.06 0.06 0.06 4.3e-05 1.3e-07 2.2e-07 5.1e-07

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density1.52.63.2-1.5-1.8-1.7-1.5
Area under the delay curve0.80.91.5-1.0-0.7-0.9-1.2
BMI with tail4.314.918.43.94.33.83.3
BMI without tail2.57.89.42.73.12.72.7
Body weight1.77.38.92.83.02.72.4
Weight adjusted by age1.92.93.71.91.91.71.2
Bone surface1.32.42.9-1.5-1.4-1.5-1.7
Bone volume1.73.03.4-1.6-1.7-1.7-1.8
Breakpoint value in progressive ratio session0.00.00.00.20.00.1-0.2
Number of licking bursts0.10.20.6-0.2-0.8-0.1-0.3
Context. condit. distance diff. score2.63.24.61.62.11.51.8
Locomotion velocity, session 10.10.20.30.4-0.50.4-0.2
Locomotion distance, session 12.83.53.9-1.9-1.7-1.9-2.0
Locomotion velocity, session 20.40.40.80.90.30.90.3
Locomotion distance, session 21.31.92.4-1.3-1.5-1.2-1.4
Locomotion velocity, session 30.30.41.20.30.40.31.1
Locomotion distance, session 30.10.10.4-0.20.6-0.20.4
Stereotopy head waving bouts, day 31.72.02.2-1.5-1.2-1.5-1.4
Stereotopy head waving duration, day 30.60.81.1-0.8-1.0-0.8-0.8
Locomotion velocity, session 71.61.72.21.31.01.41.5
Locomotion distance, session 70.30.40.60.70.20.80.6
Stereotopy head waving bouts, day 71.11.31.9-1.4-0.7-1.3-1.0
Stereotopy head waving duration, day 70.80.91.6-1.2-0.5-1.2-0.6
Locomotion velocity, session 81.11.31.81.30.71.31.1
Locomotion distance, session 80.60.81.60.81.30.80.7
Degree of sensitization distance0.80.91.71.30.21.30.4
Degree of sensitization stereotypy0.20.20.3-0.6-0.2-0.5-0.1
Conditioned locomotion0.70.81.20.71.10.90.9
Cocaine response after cond. corrected1.01.21.61.31.11.20.9
Cocaine response after cond. not corrected2.53.03.61.91.71.81.6
Cocaine response before conditioning1.11.31.41.21.11.11.1
Saline control response0.60.81.80.71.30.80.4
Bone: connectivity density1.21.92.8-1.3-1.7-1.3-1.2
Bone: cortical apparent density1.72.33.6-1.9-1.0-1.9-1.2
Bone: cortical area0.50.71.40.91.20.80.3
Bone: cortical porosity0.10.10.20.4-0.30.1-0.4
Bone: cortical porosity0.20.20.50.7-0.00.4-0.3
Bone: cortical thickness0.00.10.20.40.40.10.1
Bone: cortical thickness1.31.51.91.41.11.21.3
Bone: cortical tissue density1.52.13.3-1.8-0.9-1.8-1.1
Condit. Reinf. active minus inactive responses2.73.06.41.42.51.41.4
Condit. Reinf. active-inactive response ratio0.80.92.50.41.60.50.8
Condit. Reinf. active responses3.13.86.41.82.51.81.6
Condit. Reinf. inactive responses1.21.51.91.41.11.41.0
Incentive salience index mean3.34.17.71.82.81.81.5
Condit. Reinf. lever presses2.02.84.11.62.01.71.2
Condit. Reinf. active minus inactive responses0.10.20.6-0.20.1-0.3-0.8
Condit. Reinf. active-inactive response ratio0.10.10.20.10.50.0-0.2
Condit. Reinf. active responses0.20.30.40.50.70.4-0.3
Condit. Reinf. inactive responses0.30.30.60.80.50.70.2
Condit. Reinf. lever presses1.11.52.71.31.61.20.7
Condit. Reinf. lever reinforcers received0.10.20.30.40.50.2-0.4
Conditioned reinforcement - actives0.20.40.80.80.10.90.1
Conditioned reinforcement - inactives0.10.10.20.50.00.40.2
Conditioned locomotion2.02.54.11.91.02.01.2
Patch foraging indifference point 0 sec0.50.91.30.91.10.90.9
Patch foraging indifference point AUC0.81.22.3-1.0-0.6-1.1-1.5
Delay disc. indifference point, 0s delay0.20.20.30.60.30.5-0.4
Delay disc. indifference point, 16s delay0.20.20.4-0.5-0.1-0.5-0.6
Delay disc. indifference point, 2s delay3.94.47.4-1.7-1.9-1.8-2.7
Delay disc. indifference point, 24s delay1.01.12.10.81.50.90.9
Delay disc. indifference point, 4s delay1.41.41.8-1.3-0.9-1.3-1.3
Delay disc. indifference point, 8s delay0.70.81.3-1.1-0.6-1.0-0.8
Indifference point function ln k2.44.24.52.02.12.02.1
Indifference point function log k2.44.24.52.02.12.02.1
Patch foraging total patch changes 0 sec0.30.50.90.60.90.60.8
Patch foraging total patch changes 12 sec0.00.10.10.00.30.0-0.4
Patch foraging total patch changes 18 sec1.21.82.5-1.3-1.3-1.2-1.6
Patch foraging total patch changes 24 sec0.10.20.3-0.4-0.3-0.4-0.6
Patch foraging total patch changes 6 sec0.10.20.4-0.40.0-0.5-0.6
Patch foraging time to switch 0 sec0.51.13.0-0.5-1.7-0.5-0.9
Patch foraging water rate 0 sec1.22.55.11.12.31.01.7
Patch foraging water rate 12 sec2.24.57.01.92.71.82.0
Patch foraging water rate 18 sec4.36.67.82.32.82.42.7
Patch foraging water rate 24 sec1.31.82.51.11.41.11.6
Patch foraging water rate 6 sec0.91.31.90.91.40.91.3
Seeking ratio, delayed vs. immediate footshock0.50.60.8-0.9-0.8-0.7-0.7
Distance traveled before self-admin1.41.82.1-1.4-1.5-1.2-1.3
Distance traveled after self-admin0.10.10.4-0.2-0.6-0.2-0.2
Extensor digitorum longus weight0.72.94.81.42.21.31.8
Bone: elastic displacement0.50.61.2-0.9-0.3-1.1-0.5
Bone: elastic work0.10.20.40.40.60.20.4
Bone: endosteal estimation0.20.51.20.51.10.60.3
Bone: endosteal perimeter0.30.61.30.71.10.7-0.4
Epididymis fat weight1.55.17.52.72.02.61.4
Delta time in closed arm before/after self-admin0.10.10.20.0-0.20.1-0.4
Delta time in open arm before/after self-admin0.00.00.0-0.1-0.0-0.10.0
Diff in mean of infusions in LGA sessions0.81.01.31.11.01.20.5
Delay discount exponential model param0.70.81.10.90.60.91.1
Extinction: sum of active levers before priming0.40.50.8-0.6-0.5-0.7-0.9
Active lever presses in extinction session 61.51.52.21.50.91.41.0
Bone: final force0.00.00.10.1-0.2-0.1-0.3
Bone: final moment0.10.10.2-0.2-0.4-0.3-0.5
Food consumed during 24 hour testing period3.44.77.71.82.81.92.0
Glucose0.20.20.4-0.50.3-0.6-0.5
Heart weight0.81.22.00.91.40.71.3
Delay discount hyperbolic model param1.11.31.81.10.91.11.3
Intermittent access intake day 1-15 change0.30.71.11.00.51.00.6
Intermittent access intake escalation0.40.81.21.10.61.10.6
Intermittent access intake escalation 20.91.12.01.40.61.30.4
Intermitt. access day 1 inactive lever presses0.10.30.60.80.30.70.1
Intermitt. access day 15 inactive lever presses1.63.33.81.91.42.01.9
Intermitt. access escalation Index0.10.10.3-0.5-0.5-0.3-0.2
Intermittent access day 1 total infusions0.00.00.00.1-0.00.10.2
Intermittent access day 15 total infusions0.10.20.30.5-0.00.50.2
Intermittent access terminal intake (last 3 days)0.70.91.71.30.51.20.5
Intermittent access total infusions0.10.10.20.5-0.20.5-0.0
Intermittent access day 1 locomotion0.00.00.1-0.1-0.20.0-0.2
Intermittent access day 15 total locomotion0.30.61.01.00.40.90.4
Intermittent access total locomotion0.60.70.90.90.71.00.7
Intermittent access standard deviation0.20.40.60.8-0.20.70.6
Left kidney weight3.817.522.24.73.94.53.4
Right kidney weight6.228.234.15.85.05.74.6
Cocaine induced anxiety1.01.41.71.11.21.21.3
Post-drug Anxiety2.12.33.11.21.81.21.7
Baseline Anxiety0.30.40.8-0.7-0.3-0.9-0.3
Tail length0.52.12.7-1.4-1.7-1.4-1.2
Length with tail0.00.10.2-0.3-0.4-0.4-0.4
Length without tail0.10.20.30.60.50.50.0
Times rat made contact with spout1.61.93.31.11.21.21.8
Lifetime Intake0.20.20.30.6-0.40.60.0
Liver weight, left0.10.20.50.40.70.3-0.0
Liver weight, right0.10.20.3-0.5-0.3-0.6-0.6
Locomotor activity0.10.10.20.40.00.3-0.3
Locomotor testing distance0.71.21.5-1.1-1.2-1.2-1.0
Locomotor testing rearing0.61.12.5-0.8-0.8-0.9-1.6
Locomotion in novel chamber1.41.82.51.50.41.51.6
Locomotion in novel chamber post-restriction0.20.30.6-0.3-0.5-0.3-0.8
Fecal boli incidents, locomotor time 10.20.30.5-0.7-0.2-0.7-0.3
Change in fecal boli incidents, locomotor task0.50.50.70.70.80.70.5
Time >=10cm from walls, locomotor time 10.20.20.30.50.50.50.2
Bouts of movement, locomotor time 10.70.81.00.90.91.00.8
Total resting periods, locomotor time 10.30.30.40.50.60.50.5
Rest time, locomotor task time 10.00.00.10.1-0.20.10.2
Distance moved, locomotor task time 10.10.10.10.30.30.40.2
Vertical activity count, locomotor time 10.30.71.01.00.81.00.5
Time >=10cm from walls, locomotor time 21.31.92.31.51.51.40.9
Bouts of movement, locomotor time 20.30.40.6-0.5-0.8-0.6-0.7
Total resting periods, locomotor time 20.20.40.5-0.6-0.7-0.6-0.7
Rest time, locomotor task time 20.40.50.7-0.9-0.7-0.9-0.4
Distance moved, locomotor task time 21.31.62.01.41.21.41.0
Vertical activity count, locomotor time 21.41.92.61.61.21.61.1
Light reinforcement 10.10.40.50.70.70.60.1
Light reinforcement 21.31.92.61.61.51.60.5
Bone: marrow area0.10.30.90.31.00.40.2
Bone: maximum diameter1.32.54.21.62.11.51.0
Bone: maximum force0.00.00.00.10.00.1-0.1
Bone: maximum moment0.00.00.1-0.1-0.2-0.2-0.3
Mean time between licks in bursts1.12.63.3-1.8-1.7-1.7-1.2
Mean num. licks in bursts0.50.81.60.41.30.41.0
Cd content in liver0.50.50.7-0.8-0.4-0.8-0.8
Co content in liver0.10.10.30.3-0.50.2-0.4
Cu content in liver0.10.10.2-0.3-0.5-0.10.3
Fe content in liver0.20.20.5-0.4-0.4-0.3-0.7
K content in liver0.20.20.4-0.4-0.6-0.3-0.4
Mg content in liver1.41.41.6-1.2-1.2-1.1-1.3
Mn content in liver0.30.40.9-0.2-1.0-0.2-0.7
Na content in liver4.04.34.9-2.2-1.8-2.1-2.2
Rb content in liver0.00.00.1-0.10.3-0.1-0.3
Se content in liver0.20.20.40.50.20.40.6
Sr content in liver1.00.91.2-1.1-0.9-1.0-0.6
Zn content in liver0.40.50.7-0.8-0.7-0.8-0.2
Bone: minimum diameter0.30.50.70.90.80.90.2
Time in familiar zone, hab. session 10.20.20.30.4-0.10.50.6
Time in novel zone, hab. session 10.80.81.1-0.8-0.7-1.0-1.1
Total zone transitions, hab. session 12.83.94.5-2.1-1.7-2.0-2.0
Total locomotion distance, hab. session 10.40.61.0-0.8-0.4-0.8-1.0
Locomotion velocity, hab. session 10.50.71.1-0.9-0.4-0.9-1.1
Time in familiar zone, hab. session 22.12.22.61.51.31.51.6
Time in novel zone, hab. session 22.22.22.8-1.7-1.2-1.7-1.4
Total zone transitions, hab. session 20.10.10.10.30.40.40.3
Total locomotion distance, hab. session 20.50.60.70.90.80.80.6
Locomotion velocity, hab. session 20.40.50.60.80.80.70.5
Novel to familiar place preference ratio0.10.10.2-0.40.4-0.30.3
Novelty place preference0.10.10.2-0.30.4-0.20.4
Time in novel zone, NPP test0.10.10.2-0.30.4-0.30.5
Total zone transitions, NPP test0.50.81.2-1.1-0.5-1.0-0.8
Total locomotion distance, NPP test0.10.10.1-0.30.2-0.3-0.4
Locomotion velocity, NPP test0.00.00.1-0.20.1-0.2-0.4
Intraocular pressure0.10.20.60.20.8-0.1-0.2
Delta distance traveled before/after self-admin3.53.74.32.11.51.92.1
Delta ambulatory time before/after self-admin2.63.24.11.61.91.52.0
Parametrial fat weight0.20.40.80.9-0.20.90.2
Pavlov. Cond. lever latency1.31.62.2-1.5-1.1-1.5-0.8
Pavlov. Cond. magazine entry latency0.10.10.2-0.00.5-0.00.2
Pavlov. Cond. change in total contacts0.30.30.80.40.90.30.1
Pavlov. Cond. index score0.20.30.50.50.70.50.3
Pavlov. Cond. latency score0.40.50.70.80.80.70.5
Pavlov. Cond. lever contacts1.21.42.11.41.01.40.8
Pavlov. Cond. magazine entry number0.10.10.30.1-0.60.2-0.1
Pavlov. Cond. intertrial magazine entries1.01.21.71.21.31.20.7
Pavlov. Cond. lever-magazine prob. diff.0.10.10.30.30.60.30.2
Pavlov. Cond. response bias0.50.61.20.71.10.70.6
Pavlov. Cond. lever latency1.92.63.0-1.6-1.7-1.6-1.4
Pavlov. Cond. magazine entry latency1.41.72.91.01.71.21.2
Pavlov. Cond. change in total contacts0.20.30.70.40.80.40.1
Pavlov. Cond. index score1.21.72.51.21.61.21.1
Pavlov. Cond. latency score2.12.73.81.62.01.61.4
Pavlov. Cond. lever contacts2.02.73.41.61.81.61.5
Pavlov. Cond. magazine entry number1.62.03.1-1.2-1.7-1.3-1.3
Pavlov. Cond. intertrial magazine entries0.30.51.5-0.3-1.2-0.4-0.4
Pavlov. Cond. lever-magazine prob. diff.1.41.92.81.31.71.31.2
Pavlov. Cond. response bias0.71.01.31.01.21.00.8
Time in closed arm before self-admin1.21.62.1-1.1-1.1-1.3-1.5
Time in closed arm after self-admin0.70.71.6-0.3-1.0-0.4-1.3
Time in open arm before self-admin0.00.00.1-0.10.10.00.3
Time in open arm after self-admin0.10.20.40.10.60.20.5
Bone: periosteal estimation0.40.91.90.91.40.80.3
Bone: periosteal perimeter0.71.22.11.21.41.10.2
Bone: post-yield work0.50.71.0-0.9-1.0-0.7-0.6
Progressive ratio test 1 active lever presses0.10.10.10.1-0.30.20.3
Progressive ratio test 1 breakpoint0.10.10.20.0-0.50.10.2
Progressive ratio test 1 inactive lever presses0.00.00.10.3-0.20.2-0.1
Progressive ratio test 2 active lever presses0.50.61.01.00.40.90.6
Progressive ratio test 2 breakpoint0.30.40.70.90.30.80.4
Progressive ratio test 2 inactive lever presses0.30.61.01.00.40.90.5
Incentive Sensitization - Responses0.60.91.31.21.01.00.5
Incentive Sensitization - Breakpoint0.60.81.21.11.01.00.4
Sum of active levers in priming session hrs 5-60.10.10.20.2-0.40.2-0.4
Progressive ratio0.10.20.30.60.10.60.4
Food seeking constrained by brief footshock1.92.33.61.91.21.81.0
Seeking ratio, punishment vs. effort0.00.00.10.10.30.1-0.2
Retroperitoneal fat weight1.87.710.93.32.33.22.0
Reaction time number correct0.30.61.0-1.0-0.4-1.0-0.5
Reaction time mean minus median0.10.30.90.31.00.30.4
Reaction time mean minus median AUC0.10.30.80.30.90.40.5
Reaction time num false alarms0.10.10.3-0.2-0.5-0.2-0.3
Reaction time num false alarms AUC0.00.00.00.0-0.10.00.2
Reaction time trials correct on left0.30.61.0-1.0-0.4-1.0-0.5
Reaction time trials on left0.30.61.0-1.0-0.4-1.0-0.5
Reaction time mean0.00.10.2-0.20.10.00.5
Reaction time mean AUC0.00.00.1-0.3-0.0-0.10.3
Median of all reaction times0.10.10.4-0.2-0.0-0.00.6
Reaction time omissions0.00.10.1-0.3-0.2-0.30.0
Reaction time false alarm rate0.10.10.20.4-0.00.40.2
Reaction time premature initiation rate2.23.04.51.92.11.80.9
Reaction time premature initiations0.71.32.81.01.71.00.6
Std. dev. reaction times0.20.50.80.50.90.50.7
Reaction time trials completed0.30.61.0-1.0-0.4-1.0-0.5
Reaction time trials AUC0.20.30.6-0.8-0.2-0.8-0.3
Run reversals in cocaine runway, females0.10.10.10.20.20.20.4
Run reversals in cocaine runway, males0.80.81.0-1.0-0.4-1.0-1.0
Latency to leave start box in cocaine runway2.22.53.11.51.81.51.5
Latency to leave start box in cocaine runway, F4.95.66.82.12.62.12.5
Latency to leave start box in cocaine runway, M0.30.30.8-0.2-0.6-0.2-0.9
Std. dev. time between licks in bursts0.20.30.60.80.10.7-0.1
Total sessions with >9 infusions0.20.20.40.6-0.30.60.3
Short access day 1 total inactive lever presses4.35.75.92.42.42.32.4
Short access day 10 total inactive lever presses3.07.39.63.02.63.12.0
Short access day 1 total infusions0.91.11.81.20.41.31.0
Short access day 10 total infusions0.60.71.31.1-0.01.10.6
Short access total infusions0.50.61.11.0-0.11.10.5
Short access day 1 locomotion0.70.91.41.20.21.20.8
Short access day 10 total locomotion0.51.01.81.20.41.30.7
Short access total locomotion0.40.51.01.0-0.31.00.3
One hour access (0.3 mA shock)0.30.40.80.9-0.10.9-0.0
Compulsive drug intake0.20.20.8-0.10.9-0.10.3
One hour access (shock baseline)0.30.50.70.8-0.80.7-0.3
Social response proportion0.10.10.2-0.3-0.1-0.3-0.5
Social responses0.00.10.1-0.2-0.0-0.3-0.3
Social time0.71.01.80.81.10.71.3
Soleus weight1.13.33.71.91.81.81.8
Bone: stiffness0.10.10.2-0.3-0.5-0.2-0.5
Tibialis anterior weight0.10.30.30.50.60.40.6
Time to tail flick, vehicle, before self-admin1.41.41.91.31.41.20.9
Time to tail flick, vehicle, after self-admin0.60.81.10.91.10.80.7
Time to tail flick, test, before self-admin0.40.40.80.8-0.30.90.1
Time to tail flick, test, after self-admin3.23.34.22.01.42.01.8
Delta time to tail flick, vehicle, before/after SA0.40.30.6-0.7-0.3-0.8-0.4
Delta time to tail flick, test, before/after SA0.60.61.20.51.10.30.9
Tibia length1.23.33.9-2.0-1.7-1.8-1.7
Ambulatory time before self-admin0.30.50.9-0.7-1.0-0.5-0.6
Ambulatory time after self-admin0.20.20.40.30.30.40.7
Bone: tissue strength1.81.82.1-1.4-1.5-1.4-1.0
Total heroin consumption0.00.00.00.20.00.2-0.1
Bone: trabecular number1.22.12.7-1.3-1.6-1.5-1.2
Bone: trabecular spacing1.82.43.21.81.31.81.2
Bone: trabecular thickness0.30.40.8-0.2-0.7-0.5-0.9
Bone: trabecular tissue density1.32.02.4-1.5-1.1-1.4-1.5
Water consumed over 24 hours0.10.20.30.30.50.40.5
Number of responses in last shaping day0.30.41.1-0.3-1.0-0.3-0.5