LOC102546491

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Adipose mRNA stability LOC102546491 0.25 0.09 0.0e+00 0.18 0.2 0.19 0.2 2.0e-19 2.4e-22 4.7e-21 8.7e-22
2 Adipose alternative TSS XR_589851.2 0.24 0.1 9.3e-09 0.06 0.07 0.08 0.06 1.7e-07 2.7e-08 4.0e-09 5.0e-07
3 Adipose gene expression LOC102546491 0.3 0.11 0.0e+00 0.21 0.26 0.28 0.25 4.8e-23 2.9e-29 1.5e-30 1.9e-27
4 Adipose alternative TSS XR_005497237.1 0.06 0.04 1.0e-05 0.03 0.05 0.05 0.03 1.8e-04 5.9e-06 1.9e-06 1.4e-04

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density0.91.53.20.91.80.9-1.1
Area under the delay curve0.10.10.1-0.2-0.40.00.3
BMI with tail0.93.14.1-1.3-1.7-1.92.0
BMI without tail0.51.12.10.81.00.8-1.4
Body weight0.52.03.81.91.51.2-0.9
Weight adjusted by age0.20.20.60.2-0.10.20.8
Bone surface2.44.37.01.92.72.0-1.5
Bone volume2.03.45.81.72.41.7-1.3
Breakpoint value in progressive ratio session0.70.82.4-0.6-0.1-0.4-1.6
Number of licking bursts0.10.20.3-0.5-0.5-0.20.2
Context. condit. distance diff. score1.41.72.31.21.50.9-1.4
Locomotion velocity, session 11.11.22.4-1.1-0.1-1.51.0
Locomotion distance, session 10.40.50.9-0.50.1-0.80.9
Locomotion velocity, session 21.21.41.9-1.2-0.9-1.21.4
Locomotion distance, session 20.40.60.7-0.9-0.5-0.80.8
Locomotion velocity, session 30.81.01.5-1.2-0.8-1.10.7
Locomotion distance, session 31.01.12.1-1.4-1.2-0.90.1
Stereotopy head waving bouts, day 30.20.21.00.1-0.00.0-1.0
Stereotopy head waving duration, day 30.60.71.00.90.90.5-1.0
Locomotion velocity, session 71.11.21.81.31.31.20.2
Locomotion distance, session 70.60.81.61.10.71.3-0.2
Stereotopy head waving bouts, day 71.82.03.2-1.5-1.5-1.80.4
Stereotopy head waving duration, day 70.81.01.9-0.9-1.0-1.40.4
Locomotion velocity, session 80.20.30.5-0.10.6-0.4-0.7
Locomotion distance, session 80.10.20.4-0.20.4-0.60.0
Degree of sensitization distance3.03.15.02.21.81.8-0.9
Degree of sensitization stereotypy1.71.92.6-1.6-1.3-1.60.8
Conditioned locomotion0.30.30.90.10.50.3-0.9
Cocaine response after cond. corrected0.50.61.70.60.41.3-0.2
Cocaine response after cond. not corrected1.31.43.11.11.21.80.1
Cocaine response before conditioning0.40.50.70.60.90.40.7
Saline control response4.15.48.72.62.33.0-0.9
Bone: connectivity density0.71.12.90.71.70.9-0.6
Bone: cortical apparent density2.53.34.5-1.5-1.7-1.92.1
Bone: cortical area2.23.35.82.41.82.0-0.1
Bone: cortical porosity0.10.10.10.30.40.2-0.3
Bone: cortical porosity0.10.10.30.30.30.2-0.5
Bone: cortical thickness0.50.71.31.10.50.61.1
Bone: cortical thickness1.21.32.2-1.0-1.1-1.01.5
Bone: cortical tissue density2.93.84.8-1.6-1.9-2.12.2
Condit. Reinf. active minus inactive responses0.40.40.8-0.7-0.3-0.90.5
Condit. Reinf. active-inactive response ratio0.10.10.2-0.20.0-0.5-0.0
Condit. Reinf. active responses0.20.30.5-0.5-0.2-0.60.7
Condit. Reinf. inactive responses0.00.00.10.0-0.0-0.20.3
Incentive salience index mean0.10.10.2-0.40.4-0.40.2
Condit. Reinf. lever presses0.60.82.40.51.50.4-0.6
Condit. Reinf. active minus inactive responses0.40.51.20.40.50.6-1.1
Condit. Reinf. active-inactive response ratio0.10.10.3-0.2-0.2-0.3-0.5
Condit. Reinf. active responses1.31.82.41.31.21.5-1.2
Condit. Reinf. inactive responses1.61.93.01.51.41.7-0.8
Condit. Reinf. lever presses2.12.94.81.71.62.2-1.2
Condit. Reinf. lever reinforcers received1.62.22.71.51.41.6-1.4
Conditioned reinforcement - actives1.61.62.51.41.61.1-0.9
Conditioned reinforcement - inactives0.00.10.1-0.10.0-0.3-0.3
Conditioned locomotion2.22.63.82.01.81.8-0.5
Patch foraging indifference point 0 sec0.81.32.71.20.60.7-1.6
Patch foraging indifference point AUC2.63.03.5-1.3-1.8-1.91.8
Delay disc. indifference point, 0s delay0.40.51.30.70.41.1-0.2
Delay disc. indifference point, 16s delay0.00.00.10.1-0.20.20.2
Delay disc. indifference point, 2s delay0.40.41.1-0.00.50.51.0
Delay disc. indifference point, 24s delay0.40.40.70.6-0.60.3-0.8
Delay disc. indifference point, 4s delay1.31.42.0-0.9-1.4-1.01.4
Delay disc. indifference point, 8s delay0.10.10.2-0.2-0.4-0.40.3
Indifference point function ln k5.17.19.32.43.02.9-2.2
Indifference point function log k5.17.19.32.43.02.9-2.2
Patch foraging total patch changes 0 sec0.81.42.71.20.80.8-1.6
Patch foraging total patch changes 12 sec0.70.91.9-0.6-1.4-1.2-0.0
Patch foraging total patch changes 18 sec1.11.42.2-0.5-1.5-1.41.1
Patch foraging total patch changes 24 sec0.20.20.30.4-0.60.3-0.5
Patch foraging total patch changes 6 sec0.40.71.5-0.2-1.2-0.8-0.7
Patch foraging time to switch 0 sec1.01.62.9-1.7-1.2-1.4-0.0
Patch foraging water rate 0 sec1.62.64.32.11.71.80.2
Patch foraging water rate 12 sec1.32.02.61.61.61.5-0.8
Patch foraging water rate 18 sec3.44.65.52.32.22.3-1.7
Patch foraging water rate 24 sec0.40.61.20.80.40.7-1.1
Patch foraging water rate 6 sec3.75.49.72.91.83.1-0.1
Seeking ratio, delayed vs. immediate footshock0.20.20.60.20.30.80.2
Distance traveled before self-admin0.40.50.80.90.60.8-0.1
Distance traveled after self-admin0.10.10.1-0.00.30.30.3
Extensor digitorum longus weight0.93.57.22.71.42.2-0.2
Bone: elastic displacement6.37.17.7-2.7-2.4-2.82.8
Bone: elastic work2.53.23.8-1.8-1.5-1.82.0
Bone: endosteal estimation0.61.21.61.10.81.3-1.2
Bone: endosteal perimeter1.53.24.11.91.92.0-1.3
Epididymis fat weight0.00.10.10.4-0.3-0.00.1
Delta time in closed arm before/after self-admin0.70.71.81.30.70.70.2
Delta time in open arm before/after self-admin3.02.95.8-2.4-1.6-1.8-0.1
Diff in mean of infusions in LGA sessions4.85.37.62.12.31.9-2.8
Delay discount exponential model param0.10.10.20.30.40.1-0.4
Extinction: sum of active levers before priming0.30.31.0-0.20.30.1-1.0
Active lever presses in extinction session 61.01.01.5-1.2-1.2-1.00.4
Bone: final force1.01.63.01.71.31.4-0.2
Bone: final moment0.40.71.51.20.70.80.2
Food consumed during 24 hour testing period0.80.92.60.40.80.5-1.6
Glucose1.52.33.8-1.5-2.0-1.50.8
Heart weight0.81.11.71.01.31.1-0.7
Delay discount hyperbolic model param0.10.10.20.40.40.1-0.4
Intermittent access intake day 1-15 change0.80.81.5-1.1-0.6-1.20.4
Intermittent access intake escalation0.30.30.3-0.5-0.3-0.6-0.6
Intermittent access intake escalation 20.40.40.7-0.8-0.5-0.7-0.5
Intermitt. access day 1 inactive lever presses0.20.20.50.30.70.3-0.3
Intermitt. access day 15 inactive lever presses0.20.30.4-0.4-0.6-0.20.6
Intermitt. access escalation Index1.31.22.61.30.31.6-0.4
Intermittent access day 1 total infusions0.70.81.60.71.00.4-1.3
Intermittent access day 15 total infusions0.50.61.80.60.30.2-1.4
Intermittent access terminal intake (last 3 days)0.40.50.70.80.60.6-0.8
Intermittent access total infusions1.82.03.51.31.31.0-1.9
Intermittent access day 1 locomotion0.20.20.40.30.7-0.3-0.4
Intermittent access day 15 total locomotion0.40.51.0-0.8-0.1-1.00.5
Intermittent access total locomotion0.10.20.4-0.20.4-0.60.2
Intermittent access standard deviation0.50.51.70.10.50.1-1.3
Left kidney weight0.92.54.02.01.12.0-0.8
Right kidney weight2.05.68.83.01.92.6-1.9
Cocaine induced anxiety1.31.63.92.0-0.31.5-0.3
Post-drug Anxiety0.40.41.21.1-0.50.50.1
Baseline Anxiety0.70.71.4-1.2-0.5-0.90.5
Tail length7.923.927.55.04.95.2-4.4
Length with tail3.713.516.94.13.73.8-3.0
Length without tail0.30.61.61.30.50.70.4
Times rat made contact with spout0.20.20.7-0.2-0.0-0.80.1
Lifetime Intake2.93.34.91.81.51.6-2.2
Liver weight, left0.30.51.6-0.0-1.3-0.10.7
Liver weight, right0.50.91.41.2-0.30.91.2
Locomotor activity0.40.71.90.51.4-0.4-0.6
Locomotor testing distance0.40.61.30.41.1-0.5-0.9
Locomotor testing rearing0.20.20.4-0.1-0.6-0.7-0.4
Locomotion in novel chamber1.31.63.81.22.01.0-0.1
Locomotion in novel chamber post-restriction0.80.91.91.40.70.6-1.0
Fecal boli incidents, locomotor time 12.02.24.70.61.41.4-2.2
Change in fecal boli incidents, locomotor task0.10.10.20.50.40.0-0.2
Time >=10cm from walls, locomotor time 11.01.02.10.01.4-0.2-1.5
Bouts of movement, locomotor time 11.31.52.7-1.4-1.0-1.70.4
Total resting periods, locomotor time 11.11.22.0-1.3-1.1-1.40.4
Rest time, locomotor task time 10.10.10.1-0.3-0.3-0.40.2
Distance moved, locomotor task time 10.10.10.20.30.30.1-0.4
Vertical activity count, locomotor time 10.00.00.1-0.00.1-0.1-0.3
Time >=10cm from walls, locomotor time 21.71.83.70.31.80.1-1.9
Bouts of movement, locomotor time 21.01.11.8-0.7-1.0-1.01.3
Total resting periods, locomotor time 20.91.01.4-0.7-1.1-1.01.2
Rest time, locomotor task time 20.60.71.2-0.7-1.1-0.8-0.8
Distance moved, locomotor task time 20.30.30.60.80.60.20.5
Vertical activity count, locomotor time 20.10.10.10.30.40.10.3
Light reinforcement 10.30.62.10.3-0.30.31.5
Light reinforcement 22.33.04.52.02.11.90.2
Bone: marrow area0.61.31.71.20.81.3-1.2
Bone: maximum diameter1.42.53.71.91.61.9-0.8
Bone: maximum force0.81.42.11.51.31.4-0.4
Bone: maximum moment0.30.50.90.90.60.80.1
Mean time between licks in bursts0.20.30.80.50.00.60.9
Mean num. licks in bursts0.10.20.30.40.6-0.2-0.4
Cd content in liver0.40.50.7-0.8-0.8-0.60.4
Co content in liver0.40.40.8-0.3-0.9-0.50.8
Cu content in liver0.10.20.20.50.30.4-0.4
Fe content in liver0.60.71.1-1.1-0.3-0.7-0.9
K content in liver2.02.03.3-1.3-1.5-1.01.8
Mg content in liver0.30.30.70.4-0.30.60.9
Mn content in liver1.71.93.61.61.11.90.2
Na content in liver0.10.10.30.3-0.10.10.5
Rb content in liver0.70.82.2-0.7-1.5-0.70.4
Se content in liver0.40.51.60.10.40.4-1.3
Sr content in liver0.30.30.8-0.5-0.1-0.90.4
Zn content in liver0.20.30.80.1-0.9-0.20.5
Bone: minimum diameter4.17.610.23.23.12.9-1.4
Time in familiar zone, hab. session 12.92.74.81.52.21.4-1.4
Time in novel zone, hab. session 11.71.72.8-0.9-1.7-1.11.3
Total zone transitions, hab. session 12.12.95.2-1.6-0.9-2.31.8
Total locomotion distance, hab. session 10.71.01.5-0.8-0.7-1.21.2
Locomotion velocity, hab. session 10.50.71.1-0.7-0.5-1.01.0
Time in familiar zone, hab. session 20.10.10.2-0.5-0.3-0.4-0.3
Time in novel zone, hab. session 20.20.20.40.60.30.60.0
Total zone transitions, hab. session 20.50.61.9-0.10.5-0.41.4
Total locomotion distance, hab. session 20.50.61.50.61.20.80.0
Locomotion velocity, hab. session 20.50.71.40.61.20.90.2
Novel to familiar place preference ratio1.71.82.21.51.31.4-1.1
Novelty place preference1.21.21.51.21.11.1-1.0
Time in novel zone, NPP test1.01.01.31.11.10.8-0.9
Total zone transitions, NPP test0.30.40.8-0.40.4-0.80.9
Total locomotion distance, NPP test0.00.10.10.10.30.30.1
Locomotion velocity, NPP test0.10.10.4-0.2-0.20.30.6
Intraocular pressure1.11.54.60.61.00.5-2.2
Delta distance traveled before/after self-admin0.40.40.9-0.9-0.2-0.60.6
Delta ambulatory time before/after self-admin0.40.50.8-0.9-0.3-0.70.7
Parametrial fat weight0.10.20.50.70.40.20.5
Pavlov. Cond. lever latency0.40.61.20.5-1.10.20.9
Pavlov. Cond. magazine entry latency0.20.20.50.30.70.3-0.5
Pavlov. Cond. change in total contacts0.60.61.70.00.80.3-1.3
Pavlov. Cond. index score0.40.50.9-0.11.00.2-0.9
Pavlov. Cond. latency score0.40.50.9-0.10.90.2-0.9
Pavlov. Cond. lever contacts0.40.51.4-0.11.20.1-0.7
Pavlov. Cond. magazine entry number0.10.10.30.3-0.20.10.5
Pavlov. Cond. intertrial magazine entries0.30.40.70.80.80.5-0.1
Pavlov. Cond. lever-magazine prob. diff.0.40.51.20.01.10.3-0.9
Pavlov. Cond. response bias0.10.20.6-0.20.8-0.1-0.3
Pavlov. Cond. lever latency0.00.10.20.0-0.4-0.3-0.0
Pavlov. Cond. magazine entry latency0.00.00.1-0.00.00.4-0.3
Pavlov. Cond. change in total contacts0.10.10.30.30.20.50.1
Pavlov. Cond. index score0.10.10.30.20.20.6-0.2
Pavlov. Cond. latency score0.20.20.50.40.40.7-0.2
Pavlov. Cond. lever contacts0.10.10.20.10.30.4-0.3
Pavlov. Cond. magazine entry number0.80.91.3-0.9-0.7-1.11.1
Pavlov. Cond. intertrial magazine entries0.00.10.20.20.40.1-0.1
Pavlov. Cond. lever-magazine prob. diff.0.00.10.20.00.20.4-0.1
Pavlov. Cond. response bias0.00.10.2-0.2-0.00.2-0.4
Time in closed arm before self-admin1.11.23.9-1.0-2.00.2-0.3
Time in closed arm after self-admin0.20.20.50.0-0.70.5-0.1
Time in open arm before self-admin4.34.66.62.52.62.0-1.3
Time in open arm after self-admin0.50.61.5-0.20.8-0.2-1.2
Bone: periosteal estimation1.73.65.52.31.82.2-1.0
Bone: periosteal perimeter4.06.79.63.12.73.0-0.8
Bone: post-yield work1.52.14.91.01.11.1-2.2
Progressive ratio test 1 active lever presses0.20.20.40.10.6-0.2-0.5
Progressive ratio test 1 breakpoint0.10.10.40.10.6-0.3-0.3
Progressive ratio test 1 inactive lever presses0.10.10.1-0.20.2-0.3-0.2
Progressive ratio test 2 active lever presses0.30.40.60.80.60.6-0.4
Progressive ratio test 2 breakpoint0.20.30.30.60.50.4-0.5
Progressive ratio test 2 inactive lever presses0.20.20.30.50.50.5-0.3
Incentive Sensitization - Responses0.10.10.20.2-0.20.4-0.3
Incentive Sensitization - Breakpoint0.00.00.1-0.0-0.30.3-0.0
Sum of active levers in priming session hrs 5-61.81.73.00.71.70.7-1.7
Progressive ratio0.60.71.2-1.1-0.4-1.00.6
Food seeking constrained by brief footshock0.80.91.5-1.1-1.0-1.20.1
Seeking ratio, punishment vs. effort0.00.10.10.2-0.30.00.2
Retroperitoneal fat weight0.41.52.61.61.50.80.5
Reaction time number correct3.24.67.82.11.81.7-2.8
Reaction time mean minus median2.33.13.7-1.9-1.4-1.91.8
Reaction time mean minus median AUC3.95.15.7-2.4-2.1-2.32.2
Reaction time num false alarms0.50.71.1-1.0-1.0-0.7-0.2
Reaction time num false alarms AUC0.50.71.2-1.1-1.0-0.9-0.1
Reaction time trials correct on left3.24.67.82.11.81.7-2.8
Reaction time trials on left3.14.47.72.01.71.7-2.8
Reaction time mean1.92.63.5-1.6-1.7-1.21.9
Reaction time mean AUC1.82.53.2-1.6-1.6-1.31.8
Median of all reaction times1.01.32.5-0.9-1.3-0.51.6
Reaction time omissions3.14.36.6-2.6-2.6-2.00.2
Reaction time false alarm rate1.62.23.1-1.8-1.6-1.31.2
Reaction time premature initiation rate1.01.42.11.41.41.20.4
Reaction time premature initiations2.53.65.22.32.11.9-1.2
Std. dev. reaction times3.85.36.7-2.6-2.2-2.42.0
Reaction time trials completed3.14.47.72.01.71.7-2.8
Reaction time trials AUC2.94.17.42.01.61.5-2.7
Run reversals in cocaine runway, females0.50.51.10.61.10.2-0.7
Run reversals in cocaine runway, males1.31.31.9-1.3-1.4-0.90.7
Latency to leave start box in cocaine runway0.30.30.8-0.20.5-0.40.9
Latency to leave start box in cocaine runway, F0.10.10.30.10.50.2-0.3
Latency to leave start box in cocaine runway, M0.80.82.10.10.9-0.21.5
Std. dev. time between licks in bursts0.60.71.40.8-0.51.20.8
Total sessions with >9 infusions0.30.40.60.70.00.8-0.5
Short access day 1 total inactive lever presses0.40.50.70.40.60.8-0.8
Short access day 10 total inactive lever presses0.20.20.5-0.70.2-0.20.4
Short access day 1 total infusions2.12.33.61.60.81.5-1.9
Short access day 10 total infusions1.61.82.71.31.40.9-1.6
Short access total infusions2.22.53.91.61.21.4-2.0
Short access day 1 locomotion0.10.10.3-0.2-0.2-0.30.5
Short access day 10 total locomotion0.30.31.00.31.0-0.2-0.5
Short access total locomotion0.20.20.6-0.40.2-0.80.4
One hour access (0.3 mA shock)1.21.42.11.01.11.1-1.4
Compulsive drug intake0.30.30.70.30.20.80.5
One hour access (shock baseline)1.41.64.60.80.90.5-2.1
Social response proportion0.20.20.50.60.10.70.2
Social responses0.50.61.8-0.7-1.3-0.30.2
Social time1.01.44.1-1.0-2.0-0.7-0.0
Soleus weight1.13.34.31.91.72.1-1.6
Bone: stiffness1.72.63.92.01.81.5-0.9
Tibialis anterior weight2.38.013.83.71.83.7-1.2
Time to tail flick, vehicle, before self-admin0.40.40.50.70.60.4-0.6
Time to tail flick, vehicle, after self-admin0.30.31.0-1.0-0.4-0.10.1
Time to tail flick, test, before self-admin0.60.61.2-0.5-0.9-0.21.1
Time to tail flick, test, after self-admin1.71.72.8-1.5-1.7-0.90.9
Delta time to tail flick, vehicle, before/after SA1.11.11.8-1.3-0.8-0.71.4
Delta time to tail flick, test, before/after SA0.10.00.10.10.0-0.2-0.4
Tibia length0.00.10.10.20.40.3-0.3
Ambulatory time before self-admin0.20.20.50.70.40.5-0.2
Ambulatory time after self-admin0.10.10.50.10.70.20.2
Bone: tissue strength0.20.20.4-0.5-0.60.0-0.2
Total heroin consumption0.91.01.3-1.1-0.8-1.1-1.0
Bone: trabecular number2.43.85.91.62.41.8-1.8
Bone: trabecular spacing1.21.52.3-0.8-1.5-0.91.5
Bone: trabecular thickness0.50.60.9-0.80.3-1.00.7
Bone: trabecular tissue density0.40.61.80.2-0.6-0.41.4
Water consumed over 24 hours0.50.61.30.31.10.3-1.0
Number of responses in last shaping day0.60.61.70.81.30.30.4