LOC100910615

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Brain gene expression LOC100910615 0.07 0.05 1.6e-07 0.07 0.06 0.06 0.06 5.5e-07 1.0e-06 2.6e-06 1.5e-06
2 PL gene expression LOC100910615 0.07 0.05 1.2e-09 0.08 0.09 0.08 0.08 8.7e-09 8.4e-10 4.2e-09 3.1e-09
3 OFC gene expression LOC100910615 0.68 0.19 6.9e-04 0.13 0.11 0.12 0.13 4.5e-04 1.4e-03 7.3e-04 6.2e-04
4 NAcc gene expression LOC100910615 0.11 0.07 3.4e-15 0.14 0.14 0.14 0.14 4.5e-16 1.4e-15 1.6e-16 8.9e-16

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density0.50.81.11.1-1.00.80.8
Area under the delay curve0.70.81.2-1.11.0-0.8-0.5
BMI with tail1.75.46.7-2.62.6-2.3-1.7
BMI without tail1.12.23.0-1.71.7-1.4-0.9
Body weight5.924.627.9-5.35.3-5.1-4.1
Weight adjusted by age0.81.01.5-0.91.2-1.1-0.6
Bone surface0.00.00.10.20.0-0.10.3
Bone volume0.00.00.00.00.1-0.2-0.1
Breakpoint value in progressive ratio session0.20.30.30.5-0.60.50.4
Number of licking bursts0.50.60.70.8-0.80.70.7
Context. condit. distance diff. score0.30.30.60.4-0.60.70.5
Locomotion velocity, session 10.50.60.70.8-0.80.80.6
Locomotion distance, session 13.34.24.82.2-2.12.11.8
Locomotion velocity, session 20.20.30.30.5-0.50.50.5
Locomotion distance, session 20.81.21.31.2-1.11.10.9
Locomotion velocity, session 30.50.60.7-0.70.7-0.8-0.8
Locomotion distance, session 30.20.20.30.5-0.50.50.3
Stereotopy head waving bouts, day 32.02.42.7-1.61.5-1.5-1.5
Stereotopy head waving duration, day 30.10.10.2-0.40.4-0.3-0.2
Locomotion velocity, session 70.00.00.10.1-0.20.1-0.3
Locomotion distance, session 70.60.81.10.9-1.11.00.4
Stereotopy head waving bouts, day 70.50.50.6-0.70.7-0.8-0.7
Stereotopy head waving duration, day 71.31.51.9-1.21.2-1.4-1.1
Locomotion velocity, session 80.00.00.0-0.0-0.10.1-0.0
Locomotion distance, session 80.81.21.41.1-1.11.21.0
Degree of sensitization distance0.00.00.00.0-0.10.10.0
Degree of sensitization stereotypy0.00.00.0-0.00.0-0.2-0.2
Conditioned locomotion2.83.33.6-1.91.8-1.8-1.7
Cocaine response after cond. corrected0.50.50.9-0.80.9-0.7-0.4
Cocaine response after cond. not corrected0.50.60.9-0.90.9-0.7-0.4
Cocaine response before conditioning0.00.00.1-0.2-0.0-0.0-0.3
Saline control response0.70.91.2-1.10.9-0.8-0.9
Bone: connectivity density0.50.81.11.0-0.80.70.9
Bone: cortical apparent density0.00.00.00.0-0.0-0.1-0.2
Bone: cortical area0.20.30.5-0.70.7-0.4-0.1
Bone: cortical porosity0.00.00.0-0.00.00.00.1
Bone: cortical porosity0.00.00.00.0-0.00.10.1
Bone: cortical thickness0.10.10.20.2-0.30.50.5
Bone: cortical thickness0.00.10.1-0.30.1-0.1-0.4
Bone: cortical tissue density0.00.00.1-0.00.1-0.2-0.2
Condit. Reinf. active minus inactive responses0.91.01.21.1-1.00.90.9
Condit. Reinf. active-inactive response ratio0.10.10.10.4-0.20.30.4
Condit. Reinf. active responses0.10.20.30.5-0.50.30.3
Condit. Reinf. inactive responses0.10.10.30.4-0.50.30.1
Incentive salience index mean0.30.40.50.7-0.60.50.6
Condit. Reinf. lever presses0.00.10.10.3-0.20.20.3
Condit. Reinf. active minus inactive responses0.60.81.11.0-1.00.80.7
Condit. Reinf. active-inactive response ratio0.30.30.60.8-0.50.40.5
Condit. Reinf. active responses0.50.80.91.0-1.00.90.6
Condit. Reinf. inactive responses0.10.10.1-0.30.1-0.1-0.4
Condit. Reinf. lever presses3.34.55.62.1-2.32.41.6
Condit. Reinf. lever reinforcers received1.21.72.01.4-1.41.41.0
Conditioned reinforcement - actives0.60.60.6-0.80.8-0.8-0.8
Conditioned reinforcement - inactives0.10.10.20.2-0.40.30.1
Conditioned locomotion0.60.70.8-0.90.9-0.8-0.8
Patch foraging indifference point 0 sec0.30.50.6-0.80.7-0.7-0.8
Patch foraging indifference point AUC0.00.00.00.1-0.20.1-0.1
Delay disc. indifference point, 0s delay0.10.10.2-0.20.4-0.00.2
Delay disc. indifference point, 16s delay0.20.20.3-0.50.4-0.3-0.2
Delay disc. indifference point, 2s delay0.20.20.40.2-0.20.50.6
Delay disc. indifference point, 24s delay2.22.12.7-1.61.6-1.5-1.0
Delay disc. indifference point, 4s delay1.01.01.4-1.21.2-0.9-0.7
Delay disc. indifference point, 8s delay1.81.92.4-1.61.4-1.3-1.2
Indifference point function ln k0.10.20.20.5-0.30.40.4
Indifference point function log k0.10.20.20.5-0.30.40.4
Patch foraging total patch changes 0 sec0.30.40.6-0.70.6-0.6-0.8
Patch foraging total patch changes 12 sec0.00.00.1-0.1-0.10.1-0.3
Patch foraging total patch changes 18 sec0.81.01.5-1.10.8-0.9-1.2
Patch foraging total patch changes 24 sec0.30.40.60.7-0.70.80.4
Patch foraging total patch changes 6 sec0.00.00.1-0.20.2-0.1-0.2
Patch foraging time to switch 0 sec0.81.31.9-1.21.4-1.1-0.8
Patch foraging water rate 0 sec0.10.20.40.6-0.60.40.1
Patch foraging water rate 12 sec0.10.20.30.6-0.50.40.3
Patch foraging water rate 18 sec0.50.60.80.9-0.90.80.5
Patch foraging water rate 24 sec0.30.40.60.6-0.70.80.4
Patch foraging water rate 6 sec0.10.20.30.3-0.50.50.2
Seeking ratio, delayed vs. immediate footshock0.00.00.1-0.1-0.0-0.2-0.3
Distance traveled before self-admin0.80.80.9-1.00.9-1.0-0.7
Distance traveled after self-admin0.10.10.2-0.30.2-0.5-0.2
Extensor digitorum longus weight0.10.60.80.7-0.90.90.5
Bone: elastic displacement0.00.00.10.2-0.20.20.2
Bone: elastic work0.00.00.0-0.20.1-0.00.1
Bone: endosteal estimation3.16.77.7-2.72.8-2.7-2.2
Bone: endosteal perimeter1.53.14.1-1.82.0-1.9-1.2
Epididymis fat weight1.33.13.7-1.91.9-1.8-1.4
Delta time in closed arm before/after self-admin1.41.41.8-1.31.3-1.2-0.8
Delta time in open arm before/after self-admin0.80.70.80.9-0.90.90.7
Diff in mean of infusions in LGA sessions0.91.01.21.1-1.00.90.8
Delay discount exponential model param0.60.61.01.0-0.90.70.5
Extinction: sum of active levers before priming0.20.20.20.4-0.40.50.5
Active lever presses in extinction session 60.00.00.00.00.1-0.0-0.0
Bone: final force3.96.37.4-2.72.7-2.6-2.0
Bone: final moment3.35.36.4-2.52.5-2.3-1.9
Food consumed during 24 hour testing period0.40.40.6-0.70.7-0.6-0.5
Glucose0.00.00.1-0.00.10.20.3
Heart weight2.63.64.31.9-1.81.92.1
Delay discount hyperbolic model param0.30.40.60.8-0.70.50.3
Intermittent access intake day 1-15 change1.01.01.3-1.00.8-1.1-1.0
Intermittent access intake escalation1.61.51.9-1.21.1-1.4-1.2
Intermittent access intake escalation 20.00.00.10.1-0.2-0.2-0.3
Intermitt. access day 1 inactive lever presses0.00.10.10.2-0.20.30.3
Intermitt. access day 15 inactive lever presses1.51.61.9-1.31.2-1.4-1.2
Intermitt. access escalation Index0.50.40.50.7-0.60.60.6
Intermittent access day 1 total infusions0.20.30.30.5-0.60.60.4
Intermittent access day 15 total infusions0.10.10.2-0.40.3-0.4-0.4
Intermittent access terminal intake (last 3 days)0.20.30.3-0.50.5-0.6-0.5
Intermittent access total infusions0.00.00.00.1-0.20.10.1
Intermittent access day 1 locomotion0.20.20.3-0.50.4-0.4-0.4
Intermittent access day 15 total locomotion5.25.66.4-2.52.3-2.5-2.1
Intermittent access total locomotion2.02.32.8-1.71.4-1.6-1.4
Intermittent access standard deviation1.01.01.1-1.01.0-1.0-1.0
Left kidney weight2.98.39.7-2.93.0-3.1-2.5
Right kidney weight3.810.711.6-3.43.4-3.4-2.9
Cocaine induced anxiety0.00.00.10.1-0.30.1-0.2
Post-drug Anxiety0.20.20.30.5-0.60.40.2
Baseline Anxiety0.30.40.50.6-0.40.60.7
Tail length1.13.53.9-2.01.9-1.9-1.6
Length with tail2.48.910.3-3.03.0-3.2-2.7
Length without tail1.84.04.7-1.92.0-2.2-1.8
Times rat made contact with spout2.52.93.61.8-1.91.71.3
Lifetime Intake0.10.10.1-0.30.2-0.3-0.3
Liver weight, left5.99.410.6-3.32.9-3.1-3.0
Liver weight, right2.94.85.2-2.32.0-2.2-2.2
Locomotor activity0.20.30.5-0.60.4-0.4-0.7
Locomotor testing distance0.00.00.0-0.20.00.1-0.1
Locomotor testing rearing1.01.52.0-1.41.2-1.1-1.1
Locomotion in novel chamber0.50.71.00.7-0.81.00.8
Locomotion in novel chamber post-restriction1.82.12.4-1.51.6-1.4-1.3
Fecal boli incidents, locomotor time 10.00.00.0-0.10.1-0.0-0.1
Change in fecal boli incidents, locomotor task0.10.10.2-0.30.5-0.10.1
Time >=10cm from walls, locomotor time 11.41.41.7-1.11.3-1.3-1.0
Bouts of movement, locomotor time 10.20.20.30.5-0.50.50.4
Total resting periods, locomotor time 10.00.00.10.1-0.20.30.1
Rest time, locomotor task time 10.10.10.2-0.30.4-0.3-0.3
Distance moved, locomotor task time 10.10.10.1-0.30.3-0.4-0.2
Vertical activity count, locomotor time 10.50.60.8-0.70.8-0.9-0.6
Time >=10cm from walls, locomotor time 25.25.56.9-2.42.6-2.4-1.9
Bouts of movement, locomotor time 20.10.10.2-0.30.3-0.3-0.4
Total resting periods, locomotor time 20.00.00.10.2-0.10.30.1
Rest time, locomotor task time 20.00.00.1-0.10.10.20.3
Distance moved, locomotor task time 22.32.73.2-1.61.6-1.8-1.6
Vertical activity count, locomotor time 21.51.62.4-1.11.2-1.6-1.2
Light reinforcement 12.03.73.9-2.01.9-1.9-1.8
Light reinforcement 22.43.23.4-1.81.8-1.8-1.6
Bone: marrow area3.26.97.9-2.82.8-2.7-2.2
Bone: maximum diameter0.30.50.9-0.80.9-0.7-0.2
Bone: maximum force1.42.43.0-1.61.7-1.6-1.2
Bone: maximum moment1.01.82.2-1.51.5-1.3-1.0
Mean time between licks in bursts0.60.81.21.1-0.90.80.9
Mean num. licks in bursts0.20.20.20.5-0.50.50.2
Cd content in liver1.11.21.5-1.11.1-1.2-1.1
Co content in liver2.02.42.8-1.51.7-1.6-1.3
Cu content in liver3.34.04.72.2-2.12.01.7
Fe content in liver4.04.85.9-2.12.3-2.4-1.9
K content in liver1.31.31.91.4-1.10.91.1
Mg content in liver2.72.83.41.8-1.61.61.6
Mn content in liver0.10.10.20.5-0.30.20.4
Na content in liver0.10.10.20.5-0.3-0.00.2
Rb content in liver0.10.20.2-0.50.4-0.3-0.3
Se content in liver2.83.54.52.1-1.91.71.8
Sr content in liver0.00.00.10.1-0.10.30.2
Zn content in liver0.60.71.5-1.21.0-0.4-0.4
Bone: minimum diameter1.01.82.7-1.51.6-1.3-0.7
Time in familiar zone, hab. session 10.00.00.0-0.1-0.10.1-0.1
Time in novel zone, hab. session 10.20.20.3-0.40.6-0.6-0.3
Total zone transitions, hab. session 12.33.23.81.9-2.01.81.4
Total locomotion distance, hab. session 11.72.42.71.6-1.71.61.3
Locomotion velocity, hab. session 11.62.22.61.5-1.61.61.3
Time in familiar zone, hab. session 21.21.21.61.0-1.21.30.9
Time in novel zone, hab. session 21.41.41.7-1.11.3-1.3-1.0
Total zone transitions, hab. session 20.40.50.60.8-0.70.70.6
Total locomotion distance, hab. session 22.33.03.31.8-1.81.81.5
Locomotion velocity, hab. session 22.73.64.02.0-2.02.01.6
Novel to familiar place preference ratio0.30.30.4-0.60.6-0.5-0.3
Novelty place preference0.20.20.3-0.60.6-0.5-0.3
Time in novel zone, NPP test0.30.30.4-0.60.6-0.6-0.4
Total zone transitions, NPP test1.62.32.61.6-1.51.61.3
Total locomotion distance, NPP test1.31.72.11.3-1.41.51.1
Locomotion velocity, NPP test1.92.73.21.7-1.71.81.4
Intraocular pressure1.01.51.7-1.21.3-1.2-1.1
Delta distance traveled before/after self-admin0.40.50.60.8-0.80.60.6
Delta ambulatory time before/after self-admin0.50.60.80.8-0.90.70.6
Parametrial fat weight2.14.24.9-2.21.9-2.0-2.0
Pavlov. Cond. lever latency0.40.50.6-0.80.7-0.6-0.7
Pavlov. Cond. magazine entry latency0.50.60.90.8-0.70.90.7
Pavlov. Cond. change in total contacts0.40.50.6-0.70.8-0.7-0.6
Pavlov. Cond. index score0.20.20.30.5-0.40.60.5
Pavlov. Cond. latency score0.10.20.20.4-0.30.50.4
Pavlov. Cond. lever contacts0.30.30.40.6-0.50.60.6
Pavlov. Cond. magazine entry number1.11.31.5-1.21.1-1.2-1.1
Pavlov. Cond. intertrial magazine entries0.00.00.00.1-0.1-0.1-0.1
Pavlov. Cond. lever-magazine prob. diff.0.10.20.30.4-0.30.50.4
Pavlov. Cond. response bias1.01.21.41.2-1.11.21.0
Pavlov. Cond. lever latency1.72.33.2-1.51.7-1.8-1.0
Pavlov. Cond. magazine entry latency0.20.20.3-0.50.4-0.5-0.5
Pavlov. Cond. change in total contacts1.11.52.01.3-1.41.40.8
Pavlov. Cond. index score0.40.50.70.7-0.80.80.3
Pavlov. Cond. latency score0.20.20.40.5-0.60.60.2
Pavlov. Cond. lever contacts1.11.52.11.2-1.41.50.6
Pavlov. Cond. magazine entry number0.10.10.10.3-0.10.20.4
Pavlov. Cond. intertrial magazine entries0.50.71.11.0-0.80.70.7
Pavlov. Cond. lever-magazine prob. diff.0.20.20.40.4-0.60.50.1
Pavlov. Cond. response bias0.60.81.20.8-1.11.00.3
Time in closed arm before self-admin0.30.40.60.8-0.60.60.5
Time in closed arm after self-admin0.10.10.1-0.10.3-0.3-0.2
Time in open arm before self-admin0.10.20.30.3-0.60.40.2
Time in open arm after self-admin1.61.82.21.3-1.51.41.1
Bone: periosteal estimation1.93.94.9-2.12.2-2.0-1.5
Bone: periosteal perimeter0.61.01.6-1.11.3-1.0-0.5
Bone: post-yield work0.20.20.3-0.40.6-0.6-0.3
Progressive ratio test 1 active lever presses0.00.00.00.0-0.10.20.1
Progressive ratio test 1 breakpoint0.00.00.10.1-0.10.20.2
Progressive ratio test 1 inactive lever presses0.91.01.2-1.11.0-1.0-0.9
Progressive ratio test 2 active lever presses0.00.00.0-0.0-0.0-0.0-0.1
Progressive ratio test 2 breakpoint0.00.00.00.1-0.10.1-0.1
Progressive ratio test 2 inactive lever presses0.10.10.30.4-0.50.20.1
Incentive Sensitization - Responses0.80.81.01.0-1.00.90.7
Incentive Sensitization - Breakpoint0.40.40.50.7-0.70.60.5
Sum of active levers in priming session hrs 5-60.40.40.40.6-0.60.50.7
Progressive ratio3.54.04.5-2.01.9-2.1-2.0
Food seeking constrained by brief footshock0.10.10.10.4-0.30.30.4
Seeking ratio, punishment vs. effort2.53.03.41.8-1.61.81.8
Retroperitoneal fat weight1.34.14.8-2.22.1-2.0-1.8
Reaction time number correct0.71.01.4-1.00.9-1.0-1.2
Reaction time mean minus median0.20.20.3-0.40.4-0.5-0.6
Reaction time mean minus median AUC0.10.20.2-0.40.4-0.4-0.5
Reaction time num false alarms0.00.10.20.2-0.40.3-0.1
Reaction time num false alarms AUC0.40.60.90.7-1.00.80.4
Reaction time trials correct on left0.71.01.4-1.00.9-1.0-1.2
Reaction time trials on left0.71.01.3-1.00.9-0.9-1.2
Reaction time mean0.20.20.3-0.50.6-0.4-0.4
Reaction time mean AUC0.50.60.7-0.80.9-0.7-0.7
Median of all reaction times0.20.20.4-0.50.6-0.4-0.4
Reaction time omissions0.00.00.1-0.00.1-0.2-0.3
Reaction time false alarm rate1.21.61.91.3-1.41.31.2
Reaction time premature initiation rate0.10.10.20.5-0.40.30.3
Reaction time premature initiations0.10.10.3-0.20.2-0.4-0.5
Std. dev. reaction times0.00.00.1-0.10.1-0.2-0.2
Reaction time trials completed0.71.01.3-1.00.9-0.9-1.2
Reaction time trials AUC0.60.91.3-0.90.9-0.9-1.1
Run reversals in cocaine runway, females0.20.20.3-0.60.4-0.3-0.4
Run reversals in cocaine runway, males0.40.40.7-0.60.2-0.7-0.8
Latency to leave start box in cocaine runway0.70.71.11.1-0.60.71.0
Latency to leave start box in cocaine runway, F0.60.71.11.0-0.60.70.9
Latency to leave start box in cocaine runway, M0.00.00.10.2-0.00.10.3
Std. dev. time between licks in bursts0.10.10.3-0.50.6-0.20.2
Total sessions with >9 infusions0.00.00.0-0.20.10.0-0.1
Short access day 1 total inactive lever presses0.00.00.10.3-0.20.10.2
Short access day 10 total inactive lever presses0.10.10.1-0.30.1-0.1-0.3
Short access day 1 total infusions0.80.91.10.9-1.01.00.7
Short access day 10 total infusions0.00.00.00.0-0.10.00.0
Short access total infusions0.00.00.0-0.10.1-0.0-0.1
Short access day 1 locomotion0.10.10.20.1-0.20.40.2
Short access day 10 total locomotion0.40.50.60.6-0.60.80.7
Short access total locomotion0.00.00.0-0.10.10.00.0
One hour access (0.3 mA shock)0.70.81.01.0-1.00.90.6
Compulsive drug intake3.03.03.31.8-1.61.71.7
One hour access (shock baseline)0.30.40.6-0.60.4-0.6-0.8
Social response proportion0.00.00.0-0.00.10.00.1
Social responses0.00.00.10.1-0.20.30.1
Social time0.10.20.20.5-0.50.40.2
Soleus weight0.20.60.9-0.91.0-0.8-0.4
Bone: stiffness1.11.82.2-1.41.5-1.3-1.1
Tibialis anterior weight0.82.83.31.7-1.71.81.4
Time to tail flick, vehicle, before self-admin2.32.42.7-1.61.4-1.6-1.5
Time to tail flick, vehicle, after self-admin0.20.20.20.4-0.30.50.5
Time to tail flick, test, before self-admin0.10.10.10.3-0.30.20.1
Time to tail flick, test, after self-admin0.10.10.2-0.1-0.1-0.2-0.4
Delta time to tail flick, vehicle, before/after SA1.51.51.91.3-1.11.41.2
Delta time to tail flick, test, before/after SA1.51.41.6-1.31.2-1.1-1.1
Tibia length2.67.28.8-2.62.8-3.0-2.3
Ambulatory time before self-admin0.40.40.5-0.60.6-0.7-0.5
Ambulatory time after self-admin0.10.10.20.2-0.40.10.2
Bone: tissue strength0.00.00.0-0.0-0.00.0-0.1
Total heroin consumption0.30.30.70.6-0.80.40.3
Bone: trabecular number1.01.51.81.3-1.31.21.1
Bone: trabecular spacing1.92.53.1-1.81.6-1.5-1.4
Bone: trabecular thickness0.40.40.5-0.60.6-0.7-0.7
Bone: trabecular tissue density0.10.10.2-0.10.2-0.3-0.4
Water consumed over 24 hours1.41.71.81.3-1.31.31.3
Number of responses in last shaping day1.01.01.41.0-0.81.01.2