LOC100360821

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Brain gene expression LOC100360821 0.07 0.05 1.1e-05 0.04 0.04 0.04 0.04 4.6e-05 7.0e-05 7.0e-05 1.0e-04
2 Adipose gene expression LOC100360821 0.28 0.12 0.0e+00 0.21 0.22 0.22 0.23 4.8e-23 5.3e-24 1.5e-24 1.1e-24
3 NAcc gene expression LOC100360821 0.06 0.05 2.5e-04 0.01 0.02 0.03 0.02 1.5e-02 9.6e-04 3.8e-04 9.1e-04
4 PL gene expression LOC100360821 0.05 0.04 3.0e-04 0.01 0.02 0.03 0.02 5.1e-02 1.6e-03 3.3e-04 1.8e-03

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density0.40.61.31.2-0.70.80.0
Area under the delay curve0.20.20.7-0.80.3-0.00.3
BMI with tail0.82.64.82.2-1.51.60.7
BMI without tail4.49.010.93.2-3.03.32.4
Body weight2.39.712.03.5-3.13.22.6
Weight adjusted by age0.70.81.50.2-0.71.21.1
Bone surface0.61.11.51.1-1.01.20.9
Bone volume0.40.71.01.0-0.80.90.5
Breakpoint value in progressive ratio session0.60.61.6-0.7-0.10.71.3
Number of licking bursts3.44.07.22.7-2.21.71.1
Context. condit. distance diff. score0.30.40.9-0.30.4-0.5-1.0
Locomotion velocity, session 14.95.39.11.1-2.22.53.0
Locomotion distance, session 11.72.23.20.9-1.51.61.8
Locomotion velocity, session 21.01.12.31.5-1.10.90.6
Locomotion distance, session 23.24.55.02.0-2.22.22.0
Locomotion velocity, session 30.91.02.10.4-0.91.01.5
Locomotion distance, session 32.93.13.61.7-1.91.91.6
Stereotopy head waving bouts, day 30.60.72.00.0-0.60.61.4
Stereotopy head waving duration, day 30.10.20.4-0.50.1-0.10.7
Locomotion velocity, session 70.10.10.1-0.30.3-0.3-0.1
Locomotion distance, session 70.30.40.50.6-0.70.70.6
Stereotopy head waving bouts, day 72.32.63.01.7-1.71.41.6
Stereotopy head waving duration, day 71.01.21.71.0-1.10.81.3
Locomotion velocity, session 80.70.91.40.5-1.01.01.2
Locomotion distance, session 80.71.01.40.8-1.21.10.9
Degree of sensitization distance1.01.01.2-1.11.1-1.1-0.8
Degree of sensitization stereotypy1.11.21.61.3-1.20.91.0
Conditioned locomotion0.30.30.60.2-0.60.60.8
Cocaine response after cond. corrected0.50.51.1-1.00.20.11.0
Cocaine response after cond. not corrected0.60.61.8-0.8-0.10.41.3
Cocaine response before conditioning0.50.61.01.0-0.80.70.5
Saline control response2.33.03.61.4-1.81.81.9
Bone: connectivity density0.10.10.30.6-0.20.3-0.3
Bone: cortical apparent density0.91.22.1-0.41.0-1.3-1.5
Bone: cortical area0.91.42.81.7-1.11.00.6
Bone: cortical porosity0.50.50.6-0.70.7-0.7-0.8
Bone: cortical porosity0.00.00.0-0.00.0-0.1-0.2
Bone: cortical thickness0.10.20.60.7-0.1-0.1-0.4
Bone: cortical thickness0.50.50.7-0.50.8-0.7-0.8
Bone: cortical tissue density0.91.22.0-0.41.0-1.3-1.4
Condit. Reinf. active minus inactive responses0.20.20.50.7-0.50.50.2
Condit. Reinf. active-inactive response ratio0.80.81.0-1.01.0-0.9-0.8
Condit. Reinf. active responses1.51.83.31.8-1.41.30.7
Condit. Reinf. inactive responses1.51.83.61.9-1.31.20.6
Incentive salience index mean3.54.35.82.4-2.22.11.5
Condit. Reinf. lever presses10.614.116.44.1-3.93.83.2
Condit. Reinf. active minus inactive responses0.40.50.80.9-0.70.70.3
Condit. Reinf. active-inactive response ratio0.00.00.00.10.00.0-0.2
Condit. Reinf. active responses1.52.03.11.8-1.51.50.9
Condit. Reinf. inactive responses1.41.73.81.9-1.31.10.4
Condit. Reinf. lever presses0.50.61.71.3-0.60.6-0.0
Condit. Reinf. lever reinforcers received1.72.43.61.9-1.61.60.9
Conditioned reinforcement - actives0.40.41.11.1-0.80.00.1
Conditioned reinforcement - inactives0.30.40.80.9-0.8-0.20.4
Conditioned locomotion0.40.50.80.9-0.70.40.6
Patch foraging indifference point 0 sec2.33.86.20.9-1.82.22.5
Patch foraging indifference point AUC6.37.28.73.0-2.72.92.0
Delay disc. indifference point, 0s delay0.40.41.2-1.10.6-0.5-0.1
Delay disc. indifference point, 16s delay0.20.20.6-0.6-0.10.20.7
Delay disc. indifference point, 2s delay0.10.10.30.10.2-0.3-0.5
Delay disc. indifference point, 24s delay0.10.10.3-0.50.5-0.3-0.2
Delay disc. indifference point, 4s delay0.20.20.5-0.70.5-0.2-0.1
Delay disc. indifference point, 8s delay0.00.00.1-0.30.10.20.1
Indifference point function ln k1.82.53.5-1.91.6-1.7-1.0
Indifference point function log k1.82.53.5-1.91.6-1.7-1.0
Patch foraging total patch changes 0 sec2.74.46.41.2-2.02.42.5
Patch foraging total patch changes 12 sec1.51.92.61.6-1.41.50.8
Patch foraging total patch changes 18 sec1.11.42.20.9-1.21.51.1
Patch foraging total patch changes 24 sec2.83.44.91.7-1.92.21.5
Patch foraging total patch changes 6 sec4.66.98.42.1-2.62.92.8
Patch foraging time to switch 0 sec3.04.66.6-1.92.0-2.6-2.0
Patch foraging water rate 0 sec2.43.85.41.6-1.92.31.9
Patch foraging water rate 12 sec0.10.20.50.1-0.30.40.7
Patch foraging water rate 18 sec0.10.10.20.5-0.1-0.1-0.3
Patch foraging water rate 24 sec0.50.71.2-0.40.9-0.8-1.1
Patch foraging water rate 6 sec0.71.11.71.3-1.10.80.9
Seeking ratio, delayed vs. immediate footshock1.92.24.22.1-1.61.20.8
Distance traveled before self-admin7.27.69.63.1-3.02.62.3
Distance traveled after self-admin0.80.82.21.5-1.00.20.2
Extensor digitorum longus weight3.815.120.34.5-4.03.93.0
Bone: elastic displacement6.67.58.0-2.82.8-2.5-2.8
Bone: elastic work5.57.19.9-2.12.7-2.7-3.1
Bone: endosteal estimation1.63.54.01.8-2.02.01.7
Bone: endosteal perimeter1.93.94.91.7-2.12.21.8
Epididymis fat weight0.71.61.81.2-1.31.21.3
Delta time in closed arm before/after self-admin0.40.40.90.9-0.40.6-0.3
Delta time in open arm before/after self-admin0.10.10.2-0.1-0.1-0.10.4
Diff in mean of infusions in LGA sessions0.20.30.4-0.60.6-0.3-0.5
Delay discount exponential model param0.20.20.60.8-0.3-0.0-0.3
Extinction: sum of active levers before priming1.21.21.6-1.21.1-1.2-0.6
Active lever presses in extinction session 60.50.51.4-1.20.8-0.3-0.0
Bone: final force0.91.41.91.4-1.11.21.0
Bone: final moment0.50.81.21.1-0.80.90.7
Food consumed during 24 hour testing period1.51.82.01.3-1.41.31.3
Glucose1.01.51.91.4-1.31.30.8
Heart weight0.81.21.41.0-1.11.11.2
Delay discount hyperbolic model param0.20.20.50.7-0.3-0.0-0.3
Intermittent access intake day 1-15 change0.20.20.40.50.0-0.2-0.7
Intermittent access intake escalation0.20.20.60.8-0.20.2-0.4
Intermittent access intake escalation 20.40.41.11.0-0.1-0.1-0.8
Intermitt. access day 1 inactive lever presses0.70.70.90.9-1.00.90.6
Intermitt. access day 15 inactive lever presses0.40.40.70.5-0.70.40.9
Intermitt. access escalation Index1.91.62.01.2-1.21.41.3
Intermittent access day 1 total infusions0.20.20.6-0.4-0.0-0.00.8
Intermittent access day 15 total infusions0.30.30.60.8-0.60.40.4
Intermittent access terminal intake (last 3 days)1.01.12.01.4-1.20.70.7
Intermittent access total infusions0.91.01.41.2-1.10.80.9
Intermittent access day 1 locomotion0.40.41.1-1.10.6-0.30.3
Intermittent access day 15 total locomotion0.40.50.9-1.00.7-0.7-0.1
Intermittent access total locomotion0.60.71.0-0.80.8-1.0-0.5
Intermittent access standard deviation0.20.20.70.8-0.50.1-0.0
Left kidney weight1.02.93.61.5-1.81.71.9
Right kidney weight0.20.61.20.4-0.80.71.1
Cocaine induced anxiety0.40.40.9-0.60.5-0.9-0.4
Post-drug Anxiety0.60.70.91.0-0.90.60.7
Baseline Anxiety0.20.30.50.6-0.40.7-0.0
Tail length2.57.48.62.7-2.72.92.6
Length with tail1.24.55.91.8-2.12.22.4
Length without tail0.20.30.7-0.80.5-0.60.1
Times rat made contact with spout0.20.20.60.7-0.40.1-0.0
Lifetime Intake2.22.53.11.6-1.81.21.7
Liver weight, left0.61.01.41.2-1.10.90.8
Liver weight, right0.10.20.70.1-0.20.10.8
Locomotor activity0.00.00.10.3-0.20.10.2
Locomotor testing distance0.20.30.60.3-0.60.60.8
Locomotor testing rearing1.32.12.61.6-1.61.31.3
Locomotion in novel chamber0.30.40.9-0.40.7-0.3-0.9
Locomotion in novel chamber post-restriction0.30.30.80.9-0.20.1-0.7
Fecal boli incidents, locomotor time 11.41.52.6-1.61.3-0.9-0.9
Change in fecal boli incidents, locomotor task2.42.32.71.2-1.51.61.6
Time >=10cm from walls, locomotor time 10.60.61.30.2-0.70.81.2
Bouts of movement, locomotor time 11.82.02.4-1.41.4-1.6-1.2
Total resting periods, locomotor time 13.23.54.1-1.81.9-2.0-1.7
Rest time, locomotor task time 15.25.87.6-1.82.4-2.6-2.7
Distance moved, locomotor task time 14.85.25.82.1-2.32.42.3
Vertical activity count, locomotor time 14.24.45.31.7-2.22.22.3
Time >=10cm from walls, locomotor time 20.20.20.30.3-0.50.50.5
Bouts of movement, locomotor time 20.30.30.50.7-0.60.30.3
Total resting periods, locomotor time 20.00.00.10.3-0.3-0.00.0
Rest time, locomotor task time 21.41.61.8-1.31.4-1.2-1.3
Distance moved, locomotor task time 20.20.20.50.7-0.40.2-0.1
Vertical activity count, locomotor time 20.70.81.00.8-1.00.90.8
Light reinforcement 14.58.212.22.1-2.82.83.5
Light reinforcement 24.25.69.41.4-2.32.53.1
Bone: marrow area1.53.33.71.8-1.91.91.6
Bone: maximum diameter1.73.14.52.1-1.81.71.3
Bone: maximum force1.93.24.92.2-1.81.81.2
Bone: maximum moment1.22.03.41.9-1.41.40.9
Mean time between licks in bursts0.20.30.5-0.70.6-0.5-0.4
Mean num. licks in bursts2.22.63.6-1.91.7-1.5-1.2
Cd content in liver0.30.30.91.0-0.50.2-0.0
Co content in liver0.40.41.1-1.00.6-0.4-0.2
Cu content in liver1.51.82.6-1.11.3-1.4-1.6
Fe content in liver1.72.03.40.7-1.41.41.9
K content in liver0.10.10.3-0.60.20.30.2
Mg content in liver0.60.61.5-1.20.9-0.3-0.4
Mn content in liver0.10.10.2-0.10.4-0.3-0.4
Na content in liver0.80.91.1-1.10.9-1.0-0.8
Rb content in liver2.32.95.2-2.31.8-1.5-1.0
Se content in liver0.60.81.91.4-0.90.60.0
Sr content in liver0.20.20.20.4-0.30.50.3
Zn content in liver0.30.30.8-0.20.5-0.3-0.9
Bone: minimum diameter0.10.20.2-0.40.5-0.4-0.4
Time in familiar zone, hab. session 13.33.14.5-1.01.7-2.0-2.1
Time in novel zone, hab. session 10.60.61.3-0.8-0.20.61.2
Total zone transitions, hab. session 10.00.00.00.0-0.00.1-0.2
Total locomotion distance, hab. session 10.20.31.10.40.2-0.3-1.0
Locomotion velocity, hab. session 10.40.61.51.2-0.70.5-0.4
Time in familiar zone, hab. session 22.22.32.9-1.11.5-1.7-1.7
Time in novel zone, hab. session 20.30.30.6-0.80.00.30.8
Total zone transitions, hab. session 21.31.72.21.0-1.21.51.4
Total locomotion distance, hab. session 20.60.81.21.1-0.90.90.5
Locomotion velocity, hab. session 20.71.01.51.2-1.01.00.5
Novel to familiar place preference ratio1.01.12.8-1.70.9-0.60.5
Novelty place preference1.71.74.2-2.01.3-1.00.1
Time in novel zone, NPP test2.02.15.1-2.31.4-1.20.1
Total zone transitions, NPP test1.62.22.71.2-1.51.61.6
Total locomotion distance, NPP test2.53.44.01.7-2.02.01.7
Locomotion velocity, NPP test2.63.74.21.9-2.02.11.7
Intraocular pressure3.14.34.62.0-2.02.12.1
Delta distance traveled before/after self-admin0.50.61.2-0.50.6-1.1-0.8
Delta ambulatory time before/after self-admin1.51.62.6-1.11.1-1.6-1.2
Parametrial fat weight0.30.60.80.6-0.80.90.7
Pavlov. Cond. lever latency6.78.511.2-3.33.0-2.9-2.2
Pavlov. Cond. magazine entry latency0.20.20.30.6-0.40.50.3
Pavlov. Cond. change in total contacts2.62.73.41.8-1.71.71.3
Pavlov. Cond. index score2.22.84.22.0-1.71.71.1
Pavlov. Cond. latency score2.12.73.92.0-1.71.71.1
Pavlov. Cond. lever contacts4.35.06.82.6-2.32.31.6
Pavlov. Cond. magazine entry number0.40.50.8-0.90.7-0.7-0.4
Pavlov. Cond. intertrial magazine entries0.10.10.30.5-0.30.3-0.1
Pavlov. Cond. lever-magazine prob. diff.1.62.03.41.8-1.41.40.8
Pavlov. Cond. response bias2.32.83.92.0-1.71.71.2
Pavlov. Cond. lever latency0.60.82.3-1.50.7-0.60.3
Pavlov. Cond. magazine entry latency0.50.50.7-0.60.8-0.9-0.6
Pavlov. Cond. change in total contacts0.30.51.20.40.5-0.6-1.1
Pavlov. Cond. index score0.30.30.90.10.5-0.5-0.9
Pavlov. Cond. latency score0.30.40.90.20.4-0.5-1.0
Pavlov. Cond. lever contacts0.30.41.01.0-0.50.4-0.3
Pavlov. Cond. magazine entry number0.60.71.30.1-0.70.91.1
Pavlov. Cond. intertrial magazine entries0.60.81.00.8-0.90.91.0
Pavlov. Cond. lever-magazine prob. diff.0.30.41.00.10.5-0.6-1.0
Pavlov. Cond. response bias0.10.10.30.50.0-0.1-0.5
Time in closed arm before self-admin1.92.23.3-1.81.5-1.4-1.1
Time in closed arm after self-admin0.50.50.7-0.60.7-0.6-0.9
Time in open arm before self-admin3.43.74.21.8-2.02.11.9
Time in open arm after self-admin2.22.52.61.5-1.61.51.6
Bone: periosteal estimation1.43.03.71.9-1.81.81.4
Bone: periosteal perimeter1.01.72.11.1-1.31.41.3
Bone: post-yield work2.53.44.01.7-1.81.82.0
Progressive ratio test 1 active lever presses1.31.31.81.2-1.30.61.3
Progressive ratio test 1 breakpoint1.61.62.31.3-1.50.71.4
Progressive ratio test 1 inactive lever presses3.33.64.91.6-2.11.62.2
Progressive ratio test 2 active lever presses1.21.32.11.0-1.30.61.4
Progressive ratio test 2 breakpoint0.70.81.50.7-1.00.41.2
Progressive ratio test 2 inactive lever presses0.81.01.31.2-1.10.61.0
Incentive Sensitization - Responses0.80.81.41.0-1.20.40.9
Incentive Sensitization - Breakpoint0.60.61.00.9-1.00.20.7
Sum of active levers in priming session hrs 5-61.51.53.6-1.91.2-0.8-0.2
Progressive ratio0.00.00.0-0.10.00.10.1
Food seeking constrained by brief footshock11.313.916.34.0-4.03.53.3
Seeking ratio, punishment vs. effort2.73.34.52.1-2.01.51.4
Retroperitoneal fat weight0.20.60.8-0.90.9-0.8-0.6
Reaction time number correct0.30.40.70.3-0.60.80.9
Reaction time mean minus median0.91.33.20.00.9-1.0-1.8
Reaction time mean minus median AUC0.30.51.30.60.3-0.3-1.1
Reaction time num false alarms0.20.30.4-0.20.5-0.5-0.7
Reaction time num false alarms AUC0.10.10.30.5-0.30.2-0.0
Reaction time trials correct on left0.30.40.70.3-0.60.80.9
Reaction time trials on left0.20.30.60.2-0.50.70.8
Reaction time mean3.14.45.8-1.62.2-2.1-2.4
Reaction time mean AUC3.85.16.6-1.72.3-2.3-2.6
Median of all reaction times3.54.85.2-2.12.3-2.3-2.2
Reaction time omissions1.72.42.9-1.71.7-1.5-1.3
Reaction time false alarm rate0.30.40.7-0.30.6-0.7-0.9
Reaction time premature initiation rate3.74.95.5-2.22.3-2.4-1.9
Reaction time premature initiations2.02.83.4-1.81.8-1.7-1.3
Std. dev. reaction times1.92.74.8-0.81.7-1.6-2.2
Reaction time trials completed0.20.30.60.2-0.50.70.8
Reaction time trials AUC0.20.30.50.2-0.40.70.7
Run reversals in cocaine runway, females0.20.20.5-0.30.6-0.2-0.7
Run reversals in cocaine runway, males0.10.10.2-0.10.2-0.4-0.3
Latency to leave start box in cocaine runway0.30.30.60.8-0.60.30.3
Latency to leave start box in cocaine runway, F0.00.00.1-0.20.00.10.3
Latency to leave start box in cocaine runway, M2.01.92.51.6-1.51.21.2
Std. dev. time between licks in bursts0.40.50.6-0.80.8-0.6-0.7
Total sessions with >9 infusions1.61.83.40.9-1.50.71.9
Short access day 1 total inactive lever presses4.14.65.92.4-2.41.71.9
Short access day 10 total inactive lever presses0.20.20.50.7-0.50.30.2
Short access day 1 total infusions5.25.57.02.4-2.61.72.6
Short access day 10 total infusions2.12.44.01.1-1.61.32.0
Short access total infusions2.73.14.81.6-1.91.12.2
Short access day 1 locomotion0.10.20.6-0.2-0.10.10.8
Short access day 10 total locomotion1.21.31.6-1.11.2-1.3-0.9
Short access total locomotion0.30.41.00.2-0.50.41.0
One hour access (0.3 mA shock)1.11.31.51.0-1.21.21.1
Compulsive drug intake0.30.30.70.3-0.60.80.2
One hour access (shock baseline)1.01.21.51.0-1.11.01.2
Social response proportion2.52.73.6-1.61.5-1.5-1.9
Social responses0.50.60.80.9-0.80.90.4
Social time0.00.00.0-0.1-0.10.1-0.1
Soleus weight0.92.76.50.3-1.21.72.5
Bone: stiffness2.64.16.32.5-2.02.01.5
Tibialis anterior weight7.224.830.55.5-5.25.04.1
Time to tail flick, vehicle, before self-admin2.22.33.4-1.81.7-1.2-1.1
Time to tail flick, vehicle, after self-admin0.00.00.10.2-0.2-0.00.3
Time to tail flick, test, before self-admin0.20.20.60.8-0.50.3-0.2
Time to tail flick, test, after self-admin0.10.10.20.10.2-0.0-0.4
Delta time to tail flick, vehicle, before/after SA0.70.71.11.0-1.00.60.6
Delta time to tail flick, test, before/after SA0.30.30.5-0.70.6-0.4-0.4
Tibia length0.61.73.70.5-1.11.31.9
Ambulatory time before self-admin6.26.47.52.6-2.72.42.4
Ambulatory time after self-admin0.50.60.91.0-0.90.50.5
Bone: tissue strength0.10.10.10.4-0.20.20.0
Total heroin consumption0.20.20.7-0.2-0.20.10.8
Bone: trabecular number0.30.41.11.0-0.50.6-0.1
Bone: trabecular spacing0.10.10.2-0.00.3-0.5-0.4
Bone: trabecular thickness0.30.30.5-0.50.6-0.5-0.7
Bone: trabecular tissue density2.33.35.52.3-2.01.61.1
Water consumed over 24 hours0.70.91.51.2-1.10.80.5
Number of responses in last shaping day2.93.05.21.1-1.81.52.3