Ksr1

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 RMTg isoform ratio XM_039085012.2 0.12 0.1 3.5e-03 0.13 0.06 0.11 0.1 2.2e-04 8.3e-03 8.1e-04 1.4e-03
2 OFC mRNA stability Ksr1 0.2 0.14 2.8e-03 0.12 0.07 0.11 0.1 7.0e-04 9.2e-03 1.3e-03 2.7e-03
3 pVTA intron excision ratio chr10_64475594_64479640 0.3 0.18 1.8e-03 0 0.04 0.03 0.01 2.7e-01 3.0e-04 9.9e-04 2.0e-02
4 pVTA intron excision ratio chr10_64477572_64479640 0.39 0.18 3.7e-05 -0 0.07 0.08 0.03 4.1e-01 1.3e-06 1.1e-06 1.2e-03

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density1.32.35.4-1.2-2.31.50.5
Area under the delay curve0.10.20.40.50.60.30.3
BMI with tail1.13.89.2-3.0-1.6-1.2-1.4
BMI without tail0.63.06.5-2.5-1.4-1.1-1.6
Body weight1.46.212.9-3.2-3.61.30.5
Weight adjusted by age1.33.96.9-0.71.1-2.6-2.6
Bone surface0.61.21.6-1.3-1.2-0.3-1.2
Bone volume0.51.02.2-1.2-1.50.3-0.7
Breakpoint value in progressive ratio session2.13.86.50.2-1.62.52.5
Number of licking bursts0.30.81.61.31.0-0.8-0.0
Context. condit. distance diff. score0.30.30.7-0.8-0.80.10.1
Locomotion velocity, session 11.31.43.1-1.4-1.80.60.4
Locomotion distance, session 10.10.20.50.1-0.2-0.5-0.7
Locomotion velocity, session 20.00.10.1-0.3-0.30.2-0.1
Locomotion distance, session 20.81.11.7-1.3-0.8-0.6-1.2
Locomotion velocity, session 31.51.73.21.81.8-0.5-0.1
Locomotion distance, session 30.40.50.70.60.8-0.7-0.5
Stereotopy head waving bouts, day 30.00.00.00.0-0.10.10.1
Stereotopy head waving duration, day 30.40.51.21.10.50.60.5
Locomotion velocity, session 70.70.82.0-0.50.1-0.9-1.4
Locomotion distance, session 70.60.71.7-0.6-0.0-0.9-1.3
Stereotopy head waving bouts, day 70.70.81.2-0.9-1.11.00.6
Stereotopy head waving duration, day 70.60.71.1-0.5-0.81.10.8
Locomotion velocity, session 80.00.00.2-0.1-0.40.1-0.0
Locomotion distance, session 80.40.61.1-1.1-0.7-0.6-0.7
Degree of sensitization distance1.41.53.7-1.9-1.40.1-0.2
Degree of sensitization stereotypy0.91.11.3-0.9-1.21.10.9
Conditioned locomotion1.82.23.51.71.9-1.3-0.8
Cocaine response after cond. corrected0.71.02.4-1.6-0.9-0.6-0.7
Cocaine response after cond. not corrected0.81.22.8-1.7-1.3-0.2-0.6
Cocaine response before conditioning0.10.20.4-0.2-0.60.50.0
Saline control response0.00.10.10.20.2-0.1-0.4
Bone: connectivity density1.32.15.4-1.5-2.30.7-0.3
Bone: cortical apparent density0.30.51.41.20.60.30.3
Bone: cortical area1.42.33.51.31.9-1.6-1.2
Bone: cortical porosity0.91.01.9-0.50.4-1.2-1.4
Bone: cortical porosity1.01.12.2-0.30.5-1.3-1.5
Bone: cortical thickness1.72.85.22.12.3-1.0-0.6
Bone: cortical thickness0.70.91.30.90.7-0.9-1.1
Bone: cortical tissue density0.20.41.01.00.40.40.3
Condit. Reinf. active minus inactive responses0.40.51.21.10.8-0.10.1
Condit. Reinf. active-inactive response ratio0.30.30.50.60.7-0.6-0.3
Condit. Reinf. active responses0.00.00.00.20.2-0.10.0
Condit. Reinf. inactive responses0.20.30.7-0.8-0.4-0.3-0.2
Incentive salience index mean0.20.20.40.50.7-0.4-0.3
Condit. Reinf. lever presses0.20.20.8-0.9-0.4-0.1-0.1
Condit. Reinf. active minus inactive responses0.60.92.51.60.50.70.6
Condit. Reinf. active-inactive response ratio1.01.72.61.5-0.01.61.4
Condit. Reinf. active responses0.30.51.61.20.60.30.1
Condit. Reinf. inactive responses0.71.12.0-0.00.7-1.3-1.4
Condit. Reinf. lever presses1.42.15.92.41.30.60.5
Condit. Reinf. lever reinforcers received0.60.82.51.60.80.2-0.1
Conditioned reinforcement - actives0.00.20.3-0.6-0.5-0.1-0.3
Conditioned reinforcement - inactives0.20.71.5-0.50.1-0.9-1.2
Conditioned locomotion0.50.71.2-1.0-0.2-1.1-0.9
Patch foraging indifference point 0 sec0.20.72.01.40.80.00.1
Patch foraging indifference point AUC0.71.74.32.11.5-0.30.2
Delay disc. indifference point, 0s delay0.50.51.00.91.0-0.5-0.4
Delay disc. indifference point, 16s delay0.20.30.7-0.1-0.00.90.7
Delay disc. indifference point, 2s delay0.91.02.11.51.10.60.7
Delay disc. indifference point, 24s delay1.42.24.1-1.20.1-1.8-2.0
Delay disc. indifference point, 4s delay1.21.22.30.4-0.51.51.5
Delay disc. indifference point, 8s delay0.10.20.40.20.10.70.6
Indifference point function ln k0.72.02.8-1.2-1.51.71.2
Indifference point function log k0.72.02.8-1.2-1.51.71.2
Patch foraging total patch changes 0 sec0.20.51.61.30.8-0.00.1
Patch foraging total patch changes 12 sec0.40.51.61.30.5-0.3-0.2
Patch foraging total patch changes 18 sec0.81.85.12.31.20.20.7
Patch foraging total patch changes 24 sec0.62.16.12.51.30.40.6
Patch foraging total patch changes 6 sec1.93.37.52.72.2-0.8-0.5
Patch foraging time to switch 0 sec0.31.22.9-1.7-1.40.10.2
Patch foraging water rate 0 sec0.51.74.02.01.7-0.4-0.1
Patch foraging water rate 12 sec0.00.10.1-0.3-0.40.1-0.1
Patch foraging water rate 18 sec0.40.81.4-1.2-1.10.80.4
Patch foraging water rate 24 sec0.30.40.60.80.5-0.4-0.8
Patch foraging water rate 6 sec0.40.61.21.10.80.40.5
Seeking ratio, delayed vs. immediate footshock1.01.42.51.51.6-0.9-0.3
Distance traveled before self-admin0.51.22.81.31.70.10.3
Distance traveled after self-admin0.10.10.3-0.20.2-0.0-0.6
Extensor digitorum longus weight0.62.54.6-2.1-0.8-1.5-1.6
Bone: elastic displacement1.21.53.41.81.6-0.2-0.1
Bone: elastic work4.86.313.53.73.2-1.0-0.6
Bone: endosteal estimation0.10.30.5-0.10.2-0.7-0.7
Bone: endosteal perimeter0.00.10.2-0.3-0.50.20.2
Epididymis fat weight3.216.130.2-5.5-5.52.00.7
Delta time in closed arm before/after self-admin1.11.01.70.80.91.01.3
Delta time in open arm before/after self-admin1.31.53.9-1.2-2.0-0.4-0.8
Diff in mean of infusions in LGA sessions1.22.23.4-0.2-1.51.71.8
Delay discount exponential model param0.10.10.2-0.4-0.4-0.3-0.3
Extinction: sum of active levers before priming0.30.41.1-0.5-1.00.60.1
Active lever presses in extinction session 60.20.20.3-0.6-0.30.30.5
Bone: final force0.91.52.10.81.2-1.4-1.4
Bone: final moment0.71.21.60.81.1-1.2-1.2
Food consumed during 24 hour testing period0.10.10.30.10.50.20.5
Glucose0.71.02.31.31.5-0.5-0.2
Heart weight0.40.71.3-1.1-1.0-0.3-0.8
Delay discount hyperbolic model param0.20.30.5-0.7-0.7-0.3-0.4
Intermittent access intake day 1-15 change0.31.93.7-0.11.0-1.9-1.7
Intermittent access intake escalation0.42.14.2-0.20.9-2.1-1.8
Intermittent access intake escalation 21.11.93.20.31.3-1.8-1.6
Intermitt. access day 1 inactive lever presses0.11.62.80.31.1-1.7-1.5
Intermitt. access day 15 inactive lever presses0.31.72.81.71.3-1.2-0.9
Intermitt. access escalation Index1.13.44.1-1.5-2.02.01.8
Intermittent access day 1 total infusions0.00.10.4-0.3-0.6-0.10.0
Intermittent access day 15 total infusions0.61.42.9-0.6-0.2-1.7-1.5
Intermittent access terminal intake (last 3 days)0.30.50.9-0.9-0.9-0.6-0.5
Intermittent access total infusions0.40.51.3-0.3-0.1-1.2-0.7
Intermittent access day 1 locomotion0.30.51.2-0.20.1-1.1-0.9
Intermittent access day 15 total locomotion0.83.26.5-0.80.6-2.6-2.3
Intermittent access total locomotion2.73.36.8-0.70.5-2.6-2.4
Intermittent access standard deviation0.42.24.40.40.9-2.1-1.9
Left kidney weight0.10.50.8-0.3-0.90.90.6
Right kidney weight0.10.71.1-1.0-1.10.50.7
Cocaine induced anxiety0.61.52.70.8-0.51.61.6
Post-drug Anxiety3.94.47.7-0.0-1.52.82.8
Baseline Anxiety0.10.20.3-0.3-0.50.60.6
Tail length0.21.02.1-0.8-1.41.00.4
Length with tail1.14.77.1-1.0-2.72.72.0
Length without tail0.63.24.2-1.0-2.12.01.9
Times rat made contact with spout0.10.10.2-0.30.10.40.3
Lifetime Intake0.30.40.6-0.5-0.5-0.8-0.6
Liver weight, left3.86.512.0-2.8-3.52.01.5
Liver weight, right4.07.011.9-2.5-3.42.42.0
Locomotor activity0.30.50.70.8-0.30.80.8
Locomotor testing distance0.10.30.60.8-0.10.60.5
Locomotor testing rearing0.10.31.21.10.30.30.2
Locomotion in novel chamber0.81.12.80.61.7-0.9-0.6
Locomotion in novel chamber post-restriction0.41.21.8-0.8-0.71.31.3
Fecal boli incidents, locomotor time 10.61.52.3-1.3-0.4-1.3-1.5
Change in fecal boli incidents, locomotor task0.10.10.10.40.1-0.3-0.3
Time >=10cm from walls, locomotor time 11.51.83.30.10.8-1.8-1.8
Bouts of movement, locomotor time 11.11.52.10.61.3-1.4-1.3
Total resting periods, locomotor time 11.82.13.40.51.3-1.9-1.8
Rest time, locomotor task time 11.32.14.00.10.9-2.0-1.9
Distance moved, locomotor task time 10.61.73.20.4-0.61.81.8
Vertical activity count, locomotor time 10.42.54.30.4-1.12.12.1
Time >=10cm from walls, locomotor time 21.85.010.1-0.10.7-3.2-3.1
Bouts of movement, locomotor time 20.10.40.80.90.30.50.6
Total resting periods, locomotor time 20.00.10.20.50.4-0.00.1
Rest time, locomotor task time 20.60.91.30.61.1-1.1-1.0
Distance moved, locomotor task time 21.52.03.6-0.0-0.91.91.8
Vertical activity count, locomotor time 21.74.06.90.2-1.52.62.6
Light reinforcement 10.21.11.90.1-0.81.41.4
Light reinforcement 21.02.25.30.5-0.41.82.3
Bone: marrow area0.10.30.6-0.10.3-0.8-0.8
Bone: maximum diameter0.61.21.90.51.1-1.4-1.1
Bone: maximum force1.42.74.00.81.6-2.0-1.9
Bone: maximum moment1.12.23.00.81.6-1.7-1.6
Mean time between licks in bursts0.10.91.6-1.3-0.3-1.0-0.9
Mean num. licks in bursts0.41.02.4-1.6-0.90.80.0
Cd content in liver1.11.22.21.50.20.81.3
Co content in liver0.50.51.21.10.9-0.5-0.1
Cu content in liver1.01.22.51.61.4-0.30.0
Fe content in liver1.01.23.6-0.7-1.90.80.2
K content in liver0.20.20.3-0.4-0.40.30.5
Mg content in liver0.70.71.91.40.60.20.8
Mn content in liver0.20.30.50.60.7-0.3-0.3
Na content in liver0.91.12.1-0.3-1.31.40.7
Rb content in liver0.20.20.50.30.1-0.6-0.7
Se content in liver1.11.34.22.10.9-0.5-0.1
Sr content in liver0.20.20.6-0.8-0.30.0-0.3
Zn content in liver0.30.30.60.2-0.80.30.7
Bone: minimum diameter0.00.00.00.10.2-0.10.2
Time in familiar zone, hab. session 10.10.10.10.40.30.30.2
Time in novel zone, hab. session 10.10.10.1-0.2-0.30.10.3
Total zone transitions, hab. session 10.00.00.0-0.0-0.00.1-0.2
Total locomotion distance, hab. session 10.10.10.30.30.00.50.3
Locomotion velocity, hab. session 10.10.20.50.70.50.0-0.2
Time in familiar zone, hab. session 20.60.71.11.00.01.00.9
Time in novel zone, hab. session 20.10.20.3-0.10.4-0.6-0.3
Total zone transitions, hab. session 20.30.41.1-1.1-0.6-0.0-0.4
Total locomotion distance, hab. session 20.10.20.30.20.4-0.3-0.6
Locomotion velocity, hab. session 20.10.10.20.20.4-0.2-0.5
Novel to familiar place preference ratio0.40.51.2-1.1-0.4-0.7-0.5
Novelty place preference0.40.61.6-1.2-0.7-0.4-0.3
Time in novel zone, NPP test0.50.61.5-1.2-0.8-0.3-0.2
Total zone transitions, NPP test0.00.00.10.1-0.2-0.1-0.3
Total locomotion distance, NPP test0.60.81.81.31.1-0.4-0.4
Locomotion velocity, NPP test0.71.01.91.41.2-0.5-0.5
Intraocular pressure1.52.53.70.91.9-1.7-1.5
Delta distance traveled before/after self-admin1.11.22.1-1.5-1.3-0.4-0.8
Delta ambulatory time before/after self-admin0.40.82.4-0.7-1.50.3-0.2
Parametrial fat weight4.410.418.0-4.0-4.22.21.6
Pavlov. Cond. lever latency0.20.30.90.30.3-0.5-0.9
Pavlov. Cond. magazine entry latency0.50.71.3-0.2-0.71.01.1
Pavlov. Cond. change in total contacts0.50.51.30.1-0.10.91.1
Pavlov. Cond. index score0.50.61.3-0.2-0.50.91.1
Pavlov. Cond. latency score0.50.61.4-0.4-0.60.81.2
Pavlov. Cond. lever contacts0.30.30.5-0.5-0.40.60.7
Pavlov. Cond. magazine entry number0.60.81.5-0.30.3-1.2-1.2
Pavlov. Cond. intertrial magazine entries0.50.60.80.60.9-0.9-0.6
Pavlov. Cond. lever-magazine prob. diff.0.40.51.2-0.0-0.30.81.1
Pavlov. Cond. response bias0.50.61.2-0.1-0.61.01.1
Pavlov. Cond. lever latency1.62.36.4-2.5-1.3-0.7-0.7
Pavlov. Cond. magazine entry latency0.50.61.10.8-0.11.01.0
Pavlov. Cond. change in total contacts0.61.54.72.21.10.30.2
Pavlov. Cond. index score1.32.05.72.41.20.70.8
Pavlov. Cond. latency score1.42.36.52.61.30.60.8
Pavlov. Cond. lever contacts1.11.64.62.21.00.60.5
Pavlov. Cond. magazine entry number0.10.10.4-0.7-0.1-0.1-0.0
Pavlov. Cond. intertrial magazine entries0.30.71.6-0.8-0.3-0.7-1.3
Pavlov. Cond. lever-magazine prob. diff.1.11.64.42.11.00.70.8
Pavlov. Cond. response bias1.11.63.82.00.61.01.0
Time in closed arm before self-admin0.61.12.7-1.1-1.60.60.0
Time in closed arm after self-admin0.10.10.3-0.60.20.30.2
Time in open arm before self-admin1.82.24.91.22.2-1.4-0.7
Time in open arm after self-admin0.70.81.6-0.1-0.1-1.3-1.2
Bone: periosteal estimation0.51.21.80.71.2-1.3-1.1
Bone: periosteal perimeter0.10.20.30.20.5-0.5-0.3
Bone: post-yield work0.40.82.5-1.6-0.3-0.6-0.4
Progressive ratio test 1 active lever presses0.20.40.90.90.20.40.8
Progressive ratio test 1 breakpoint0.30.51.11.00.30.50.8
Progressive ratio test 1 inactive lever presses0.71.82.61.41.6-1.4-1.0
Progressive ratio test 2 active lever presses0.60.91.30.71.1-1.2-0.7
Progressive ratio test 2 breakpoint0.70.91.30.81.0-1.1-0.7
Progressive ratio test 2 inactive lever presses0.51.73.20.21.1-1.8-1.5
Incentive Sensitization - Responses0.30.71.6-0.00.6-1.2-1.0
Incentive Sensitization - Breakpoint0.30.71.5-0.00.5-1.2-1.0
Sum of active levers in priming session hrs 5-61.11.12.3-0.5-1.51.10.7
Progressive ratio0.92.54.60.21.3-2.1-2.0
Food seeking constrained by brief footshock0.00.00.1-0.1-0.2-0.2-0.2
Seeking ratio, punishment vs. effort0.61.42.6-0.3-0.91.61.4
Retroperitoneal fat weight1.46.59.5-1.3-2.83.12.5
Reaction time number correct0.93.15.7-1.30.2-2.2-2.4
Reaction time mean minus median0.10.40.6-0.4-0.80.70.7
Reaction time mean minus median AUC0.21.42.8-1.5-1.70.60.3
Reaction time num false alarms2.13.68.52.92.20.40.8
Reaction time num false alarms AUC1.63.88.42.92.5-0.00.4
Reaction time trials correct on left0.93.15.7-1.30.2-2.2-2.4
Reaction time trials on left1.03.36.0-1.30.2-2.3-2.4
Reaction time mean0.40.91.6-0.6-1.30.90.9
Reaction time mean AUC0.30.71.2-0.6-1.10.70.7
Median of all reaction times0.50.81.3-0.2-1.10.90.9
Reaction time omissions0.81.33.6-1.9-1.2-0.1-0.0
Reaction time false alarm rate2.94.09.03.02.01.01.5
Reaction time premature initiation rate1.32.13.4-0.4-1.51.81.6
Reaction time premature initiations0.20.51.1-0.8-1.10.60.3
Std. dev. reaction times0.20.51.3-1.1-0.8-0.20.0
Reaction time trials completed1.03.36.0-1.30.2-2.3-2.4
Reaction time trials AUC0.93.26.2-1.10.3-2.3-2.5
Run reversals in cocaine runway, females0.30.30.9-1.0-0.50.00.4
Run reversals in cocaine runway, males0.30.30.9-0.9-0.1-0.4-0.5
Latency to leave start box in cocaine runway0.40.60.90.90.70.41.0
Latency to leave start box in cocaine runway, F0.30.41.10.50.10.61.0
Latency to leave start box in cocaine runway, M0.10.10.40.30.7-0.10.2
Std. dev. time between licks in bursts1.32.55.1-0.80.9-2.3-1.8
Total sessions with >9 infusions0.40.51.0-0.9-1.00.2-0.1
Short access day 1 total inactive lever presses1.63.25.2-2.3-1.3-1.5-1.9
Short access day 10 total inactive lever presses0.63.97.50.11.2-2.6-2.7
Short access day 1 total infusions0.40.91.6-0.3-0.4-1.2-1.3
Short access day 10 total infusions0.30.51.3-0.5-1.20.60.4
Short access total infusions0.10.10.3-0.2-0.6-0.3-0.4
Short access day 1 locomotion0.20.40.80.40.1-0.9-0.7
Short access day 10 total locomotion0.52.22.61.51.5-1.6-1.3
Short access total locomotion0.81.22.00.81.0-1.4-1.1
One hour access (0.3 mA shock)0.20.20.30.50.4-0.6-0.4
Compulsive drug intake0.40.61.4-0.9-1.20.40.1
One hour access (shock baseline)0.10.20.40.50.6-0.6-0.2
Social response proportion1.21.63.2-1.8-1.70.4-0.1
Social responses1.01.42.1-1.3-0.8-1.1-1.5
Social time0.91.53.4-1.8-1.0-0.8-0.9
Soleus weight1.75.09.2-2.6-3.01.61.2
Bone: stiffness1.01.82.6-1.5-0.9-1.2-1.6
Tibialis anterior weight1.34.610.6-3.3-2.2-0.7-1.5
Time to tail flick, vehicle, before self-admin0.40.50.8-0.9-0.80.80.0
Time to tail flick, vehicle, after self-admin0.71.32.50.9-0.41.61.4
Time to tail flick, test, before self-admin0.20.20.6-0.40.2-0.4-0.8
Time to tail flick, test, after self-admin0.30.30.70.60.80.30.3
Delta time to tail flick, vehicle, before/after SA0.70.72.11.40.60.30.6
Delta time to tail flick, test, before/after SA0.40.51.31.10.7-0.00.4
Tibia length0.00.00.1-0.20.2-0.3-0.0
Ambulatory time before self-admin0.10.20.70.20.90.20.1
Ambulatory time after self-admin0.61.02.3-0.5-0.91.50.9
Bone: tissue strength0.60.60.90.90.60.60.8
Total heroin consumption1.31.63.2-1.3-1.81.00.6
Bone: trabecular number1.42.76.5-1.2-2.51.60.4
Bone: trabecular spacing0.91.32.9-0.41.3-1.7-0.7
Bone: trabecular thickness0.40.50.91.0-0.50.90.2
Bone: trabecular tissue density0.71.23.71.91.10.2-0.2
Water consumed over 24 hours0.61.22.40.3-0.51.41.5
Number of responses in last shaping day0.30.41.01.00.70.00.2