Ksr1

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 RMTg isoform ratio XM_039085012.2 0.12 0.1 3.5e-03 0.13 0.06 0.11 0.1 2.2e-04 8.3e-03 8.1e-04 1.4e-03
2 OFC mRNA stability Ksr1 0.2 0.14 2.8e-03 0.12 0.07 0.11 0.1 7.0e-04 9.2e-03 1.3e-03 2.8e-03
3 pVTA intron excision ratio chr10_64475594_64479640 0.3 0.18 1.8e-03 0 0.04 0.03 0.02 2.7e-01 3.0e-04 9.7e-04 1.2e-02
4 pVTA intron excision ratio chr10_64477572_64479640 0.39 0.18 3.7e-05 -0 0.07 0.07 0.03 4.1e-01 1.3e-06 1.2e-06 1.1e-03

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density1.32.35.41.22.31.5-0.4
Area under the delay curve0.20.20.4-0.5-0.60.3-0.3
BMI with tail1.13.99.23.01.6-1.21.6
BMI without tail1.03.16.52.51.4-1.11.7
Body weight1.46.212.93.23.61.3-0.3
Weight adjusted by age2.63.96.80.7-1.1-2.62.6
Bone surface0.71.31.71.31.2-0.31.3
Bone volume0.61.02.21.21.50.30.8
Breakpoint value in progressive ratio session3.13.86.5-0.21.62.5-2.4
Number of licking bursts0.50.81.6-1.3-1.0-0.80.0
Context. condit. distance diff. score0.30.30.70.80.80.1-0.0
Locomotion velocity, session 11.31.43.11.41.80.6-0.3
Locomotion distance, session 10.20.20.5-0.10.2-0.50.7
Locomotion velocity, session 20.00.10.10.30.30.20.1
Locomotion distance, session 20.81.11.71.30.8-0.61.2
Locomotion velocity, session 31.51.73.2-1.8-1.8-0.5-0.0
Locomotion distance, session 30.40.40.7-0.6-0.8-0.70.5
Stereotopy head waving bouts, day 30.00.00.0-0.00.10.1-0.1
Stereotopy head waving duration, day 30.50.51.2-1.1-0.50.6-0.5
Locomotion velocity, session 70.70.82.10.5-0.1-0.91.4
Locomotion distance, session 70.60.71.70.60.0-0.91.3
Stereotopy head waving bouts, day 70.70.81.20.91.11.0-0.6
Stereotopy head waving duration, day 70.60.71.10.50.81.1-0.8
Locomotion velocity, session 80.00.00.20.10.40.10.1
Locomotion distance, session 80.40.61.11.10.7-0.60.8
Degree of sensitization distance1.41.53.71.91.40.10.3
Degree of sensitization stereotypy1.01.01.30.91.21.1-0.9
Conditioned locomotion1.82.13.5-1.7-1.9-1.30.7
Cocaine response after cond. corrected0.91.12.41.60.9-0.60.8
Cocaine response after cond. not corrected1.11.22.81.71.3-0.20.7
Cocaine response before conditioning0.10.20.40.20.60.5-0.0
Saline control response0.00.10.1-0.2-0.2-0.10.4
Bone: connectivity density1.32.15.41.52.30.70.4
Bone: cortical apparent density0.40.51.4-1.2-0.60.3-0.3
Bone: cortical area1.42.23.5-1.3-1.9-1.61.1
Bone: cortical porosity0.91.01.90.5-0.4-1.21.4
Bone: cortical porosity1.01.12.20.3-0.5-1.31.5
Bone: cortical thickness1.72.75.2-2.1-2.3-1.00.5
Bone: cortical thickness0.70.91.3-0.9-0.7-0.91.1
Bone: cortical tissue density0.30.41.0-1.0-0.40.4-0.3
Condit. Reinf. active minus inactive responses0.40.51.2-1.1-0.8-0.1-0.2
Condit. Reinf. active-inactive response ratio0.30.30.5-0.6-0.7-0.60.3
Condit. Reinf. active responses0.00.00.0-0.2-0.2-0.1-0.0
Condit. Reinf. inactive responses0.20.30.70.80.4-0.30.2
Incentive salience index mean0.20.20.4-0.5-0.7-0.40.3
Condit. Reinf. lever presses0.20.20.80.90.4-0.10.2
Condit. Reinf. active minus inactive responses0.70.92.5-1.6-0.50.7-0.7
Condit. Reinf. active-inactive response ratio1.51.72.6-1.50.01.6-1.4
Condit. Reinf. active responses0.40.51.6-1.2-0.60.3-0.1
Condit. Reinf. inactive responses0.81.01.90.0-0.7-1.31.4
Condit. Reinf. lever presses1.52.15.9-2.4-1.30.6-0.7
Condit. Reinf. lever reinforcers received0.60.82.5-1.6-0.80.20.0
Conditioned reinforcement - actives0.10.20.30.60.5-0.10.4
Conditioned reinforcement - inactives0.50.71.60.5-0.1-0.91.3
Conditioned locomotion0.60.81.21.00.2-1.10.9
Patch foraging indifference point 0 sec0.40.72.0-1.4-0.80.0-0.2
Patch foraging indifference point AUC1.21.74.3-2.1-1.5-0.3-0.3
Delay disc. indifference point, 0s delay0.50.51.0-0.9-1.0-0.50.4
Delay disc. indifference point, 16s delay0.30.30.70.10.00.9-0.8
Delay disc. indifference point, 2s delay1.01.12.1-1.5-1.10.6-0.8
Delay disc. indifference point, 24s delay2.02.24.31.2-0.1-1.82.1
Delay disc. indifference point, 4s delay1.21.32.3-0.40.51.5-1.5
Delay disc. indifference point, 8s delay0.20.20.4-0.2-0.10.7-0.7
Indifference point function ln k1.11.92.81.21.51.7-1.1
Indifference point function log k1.11.92.81.21.51.7-1.1
Patch foraging total patch changes 0 sec0.30.51.6-1.3-0.8-0.0-0.2
Patch foraging total patch changes 12 sec0.40.51.6-1.3-0.5-0.30.2
Patch foraging total patch changes 18 sec1.21.85.1-2.3-1.20.2-0.8
Patch foraging total patch changes 24 sec1.22.16.1-2.5-1.30.4-0.7
Patch foraging total patch changes 6 sec2.13.37.5-2.7-2.2-0.80.4
Patch foraging time to switch 0 sec0.61.22.91.71.40.1-0.1
Patch foraging water rate 0 sec0.81.74.0-2.0-1.7-0.4-0.0
Patch foraging water rate 12 sec0.00.10.10.30.40.10.2
Patch foraging water rate 18 sec0.50.81.41.21.10.8-0.3
Patch foraging water rate 24 sec0.30.40.6-0.8-0.5-0.40.8
Patch foraging water rate 6 sec0.40.61.2-1.1-0.80.4-0.6
Seeking ratio, delayed vs. immediate footshock1.11.42.5-1.5-1.6-0.90.2
Distance traveled before self-admin0.91.22.8-1.3-1.70.1-0.4
Distance traveled after self-admin0.10.10.30.2-0.2-0.00.6
Extensor digitorum longus weight0.72.64.62.10.8-1.51.7
Bone: elastic displacement1.31.53.4-1.8-1.6-0.2-0.0
Bone: elastic work4.86.313.5-3.7-3.2-1.00.5
Bone: endosteal estimation0.10.30.50.1-0.2-0.70.7
Bone: endosteal perimeter0.00.10.20.30.50.2-0.2
Epididymis fat weight4.716.030.25.55.52.0-0.4
Delta time in closed arm before/after self-admin1.21.11.9-0.8-0.91.0-1.4
Delta time in open arm before/after self-admin1.61.63.91.22.0-0.40.9
Diff in mean of infusions in LGA sessions1.72.13.20.21.51.7-1.8
Delay discount exponential model param0.10.10.20.40.4-0.30.3
Extinction: sum of active levers before priming0.40.41.10.51.00.6-0.0
Active lever presses in extinction session 60.20.20.30.60.30.3-0.5
Bone: final force0.91.52.1-0.8-1.2-1.41.4
Bone: final moment0.71.21.6-0.8-1.1-1.21.1
Food consumed during 24 hour testing period0.10.20.3-0.1-0.50.2-0.5
Glucose0.71.02.3-1.3-1.5-0.50.1
Heart weight0.50.71.31.11.0-0.30.8
Delay discount hyperbolic model param0.30.30.50.70.7-0.30.4
Intermittent access intake day 1-15 change0.91.83.70.1-1.0-1.91.6
Intermittent access intake escalation1.02.14.20.2-0.9-2.11.8
Intermittent access intake escalation 21.71.93.2-0.3-1.3-1.81.6
Intermitt. access day 1 inactive lever presses0.41.62.8-0.3-1.1-1.71.4
Intermitt. access day 15 inactive lever presses0.81.72.8-1.7-1.3-1.20.9
Intermitt. access escalation Index2.43.44.11.52.02.0-1.8
Intermittent access day 1 total infusions0.10.10.40.30.6-0.10.0
Intermittent access day 15 total infusions0.91.42.90.60.2-1.71.5
Intermittent access terminal intake (last 3 days)0.40.60.90.90.9-0.60.6
Intermittent access total infusions0.40.51.30.30.1-1.20.8
Intermittent access day 1 locomotion0.40.51.20.2-0.1-1.10.9
Intermittent access day 15 total locomotion1.83.36.50.8-0.6-2.62.3
Intermittent access total locomotion2.83.36.80.7-0.5-2.62.4
Intermittent access standard deviation1.12.24.4-0.4-0.9-2.11.9
Left kidney weight0.10.50.80.30.90.9-0.6
Right kidney weight0.10.71.11.01.10.5-0.6
Cocaine induced anxiety1.11.52.7-0.80.51.6-1.6
Post-drug Anxiety4.14.47.70.01.52.8-2.7
Baseline Anxiety0.20.20.30.30.50.6-0.5
Tail length0.20.92.10.81.41.0-0.3
Length with tail1.14.67.11.02.72.7-1.8
Length without tail1.03.14.21.02.12.0-1.8
Times rat made contact with spout0.10.10.20.3-0.10.4-0.3
Lifetime Intake0.30.40.60.50.5-0.80.7
Liver weight, left3.96.412.02.83.52.0-1.3
Liver weight, right3.96.911.92.53.42.4-1.9
Locomotor activity0.30.50.7-0.80.30.8-0.8
Locomotor testing distance0.20.30.6-0.80.10.6-0.5
Locomotor testing rearing0.20.31.2-1.1-0.30.3-0.2
Locomotion in novel chamber0.81.02.8-0.6-1.7-0.90.5
Locomotion in novel chamber post-restriction0.71.11.80.80.71.3-1.3
Fecal boli incidents, locomotor time 11.11.52.51.30.4-1.31.6
Change in fecal boli incidents, locomotor task0.10.10.1-0.4-0.1-0.30.3
Time >=10cm from walls, locomotor time 11.71.83.3-0.1-0.8-1.81.8
Bouts of movement, locomotor time 11.31.52.1-0.6-1.3-1.41.3
Total resting periods, locomotor time 11.82.13.4-0.5-1.3-1.91.7
Rest time, locomotor task time 11.72.14.0-0.1-0.9-2.01.9
Distance moved, locomotor task time 11.21.73.2-0.40.61.8-1.8
Vertical activity count, locomotor time 11.02.54.3-0.41.12.1-2.1
Time >=10cm from walls, locomotor time 23.45.110.10.1-0.7-3.23.1
Bouts of movement, locomotor time 20.30.40.8-0.9-0.30.5-0.7
Total resting periods, locomotor time 20.10.10.2-0.5-0.4-0.0-0.1
Rest time, locomotor task time 20.70.91.3-0.6-1.1-1.10.9
Distance moved, locomotor task time 21.61.93.60.00.91.9-1.8
Vertical activity count, locomotor time 22.83.96.9-0.21.52.6-2.6
Light reinforcement 10.41.11.9-0.10.81.4-1.3
Light reinforcement 21.52.25.4-0.50.41.8-2.3
Bone: marrow area0.10.30.60.1-0.3-0.80.8
Bone: maximum diameter0.61.21.9-0.5-1.1-1.41.1
Bone: maximum force1.52.74.0-0.8-1.6-2.01.8
Bone: maximum moment1.22.13.0-0.8-1.6-1.71.5
Mean time between licks in bursts0.40.91.61.30.3-1.00.9
Mean num. licks in bursts0.61.02.41.60.90.80.0
Cd content in liver1.11.22.2-1.5-0.20.8-1.4
Co content in liver0.50.51.2-1.1-0.9-0.5-0.0
Cu content in liver1.01.22.5-1.6-1.4-0.3-0.1
Fe content in liver1.01.23.60.71.90.8-0.0
K content in liver0.20.20.20.40.40.3-0.5
Mg content in liver0.70.71.9-1.4-0.60.2-0.8
Mn content in liver0.20.30.5-0.6-0.7-0.30.2
Na content in liver1.01.02.10.31.31.4-0.6
Rb content in liver0.20.20.5-0.3-0.1-0.60.7
Se content in liver1.11.34.2-2.1-0.9-0.50.0
Sr content in liver0.20.20.60.80.30.00.4
Zn content in liver0.30.30.6-0.20.80.3-0.6
Bone: minimum diameter0.00.00.0-0.1-0.2-0.1-0.2
Time in familiar zone, hab. session 10.10.10.1-0.4-0.30.3-0.2
Time in novel zone, hab. session 10.10.10.10.20.30.1-0.2
Total zone transitions, hab. session 10.00.00.00.00.00.10.2
Total locomotion distance, hab. session 10.10.10.3-0.3-0.00.5-0.3
Locomotion velocity, hab. session 10.10.20.5-0.7-0.50.00.2
Time in familiar zone, hab. session 20.70.71.1-1.0-0.01.0-0.9
Time in novel zone, hab. session 20.10.20.30.1-0.4-0.60.3
Total zone transitions, hab. session 20.30.41.11.10.6-0.00.5
Total locomotion distance, hab. session 20.10.10.3-0.2-0.4-0.30.5
Locomotion velocity, hab. session 20.10.10.2-0.2-0.4-0.20.4
Novel to familiar place preference ratio0.50.61.21.10.4-0.70.6
Novelty place preference0.50.61.61.20.7-0.40.3
Time in novel zone, NPP test0.50.61.51.20.8-0.30.2
Total zone transitions, NPP test0.00.00.1-0.10.2-0.10.3
Total locomotion distance, NPP test0.60.81.8-1.3-1.1-0.40.3
Locomotion velocity, NPP test0.71.01.9-1.4-1.2-0.50.4
Intraocular pressure1.72.43.7-0.9-1.9-1.71.5
Delta distance traveled before/after self-admin1.11.22.11.51.3-0.40.9
Delta ambulatory time before/after self-admin0.60.82.40.71.50.30.3
Parametrial fat weight4.410.318.04.04.22.2-1.4
Pavlov. Cond. lever latency0.20.30.9-0.3-0.3-0.50.9
Pavlov. Cond. magazine entry latency0.50.71.30.20.71.0-1.1
Pavlov. Cond. change in total contacts0.50.61.4-0.10.10.9-1.2
Pavlov. Cond. index score0.50.61.30.20.50.9-1.2
Pavlov. Cond. latency score0.50.61.40.40.60.8-1.2
Pavlov. Cond. lever contacts0.30.30.50.50.40.6-0.7
Pavlov. Cond. magazine entry number0.60.81.50.3-0.3-1.21.2
Pavlov. Cond. intertrial magazine entries0.50.50.8-0.6-0.9-0.90.5
Pavlov. Cond. lever-magazine prob. diff.0.40.51.20.00.30.8-1.1
Pavlov. Cond. response bias0.50.61.20.10.61.0-1.1
Pavlov. Cond. lever latency1.72.36.42.51.3-0.70.8
Pavlov. Cond. magazine entry latency0.50.71.1-0.80.11.0-1.1
Pavlov. Cond. change in total contacts0.91.54.7-2.2-1.10.3-0.2
Pavlov. Cond. index score1.62.15.7-2.4-1.20.7-0.9
Pavlov. Cond. latency score1.82.46.5-2.6-1.30.6-0.9
Pavlov. Cond. lever contacts1.21.64.6-2.2-1.00.6-0.6
Pavlov. Cond. magazine entry number0.10.10.40.70.1-0.10.0
Pavlov. Cond. intertrial magazine entries0.50.71.70.80.3-0.71.3
Pavlov. Cond. lever-magazine prob. diff.1.31.74.4-2.1-1.00.7-0.9
Pavlov. Cond. response bias1.21.63.8-2.0-0.61.0-1.0
Time in closed arm before self-admin0.81.12.71.11.60.60.1
Time in closed arm after self-admin0.10.10.30.6-0.20.3-0.2
Time in open arm before self-admin1.92.14.9-1.2-2.2-1.40.5
Time in open arm after self-admin0.70.81.60.10.1-1.31.2
Bone: periosteal estimation0.61.21.8-0.7-1.2-1.31.0
Bone: periosteal perimeter0.10.10.3-0.2-0.5-0.50.3
Bone: post-yield work0.50.82.51.60.3-0.60.4
Progressive ratio test 1 active lever presses0.40.40.9-0.9-0.20.4-0.8
Progressive ratio test 1 breakpoint0.40.51.1-1.0-0.30.5-0.9
Progressive ratio test 1 inactive lever presses1.21.82.6-1.4-1.6-1.40.9
Progressive ratio test 2 active lever presses0.70.81.3-0.7-1.1-1.20.7
Progressive ratio test 2 breakpoint0.70.81.3-0.8-1.0-1.10.6
Progressive ratio test 2 inactive lever presses1.01.73.2-0.2-1.1-1.81.5
Incentive Sensitization - Responses0.50.71.60.0-0.6-1.21.0
Incentive Sensitization - Breakpoint0.50.71.50.0-0.5-1.21.0
Sum of active levers in priming session hrs 5-61.11.02.30.51.51.1-0.6
Progressive ratio1.62.54.6-0.2-1.3-2.11.9
Food seeking constrained by brief footshock0.00.00.10.10.2-0.20.3
Seeking ratio, punishment vs. effort0.91.42.60.30.91.6-1.4
Retroperitoneal fat weight1.56.39.51.32.83.1-2.4
Reaction time number correct1.63.15.91.3-0.2-2.22.4
Reaction time mean minus median0.20.40.60.40.80.7-0.7
Reaction time mean minus median AUC0.51.42.81.51.70.6-0.2
Reaction time num false alarms2.63.78.5-2.9-2.20.4-1.0
Reaction time num false alarms AUC2.43.88.4-2.9-2.5-0.0-0.6
Reaction time trials correct on left1.63.15.91.3-0.2-2.22.4
Reaction time trials on left1.83.36.21.3-0.2-2.32.5
Reaction time mean0.50.91.60.61.30.9-0.9
Reaction time mean AUC0.40.61.20.61.10.7-0.7
Median of all reaction times0.50.81.30.21.10.9-0.9
Reaction time omissions0.91.33.61.91.2-0.10.1
Reaction time false alarm rate3.04.19.0-3.0-2.01.0-1.6
Reaction time premature initiation rate1.52.03.40.41.51.8-1.5
Reaction time premature initiations0.30.51.10.81.10.6-0.2
Std. dev. reaction times0.30.51.31.10.8-0.20.1
Reaction time trials completed1.83.36.21.3-0.2-2.32.5
Reaction time trials AUC1.73.36.41.1-0.3-2.32.5
Run reversals in cocaine runway, females0.30.30.91.00.50.0-0.4
Run reversals in cocaine runway, males0.30.30.90.90.1-0.40.5
Latency to leave start box in cocaine runway0.60.61.1-0.9-0.70.4-1.0
Latency to leave start box in cocaine runway, F0.40.41.2-0.5-0.10.6-1.1
Latency to leave start box in cocaine runway, M0.20.10.4-0.3-0.7-0.1-0.3
Std. dev. time between licks in bursts1.82.55.10.8-0.9-2.31.8
Total sessions with >9 infusions0.40.51.00.91.00.20.2
Short access day 1 total inactive lever presses2.53.35.22.31.3-1.52.0
Short access day 10 total inactive lever presses1.63.97.5-0.1-1.2-2.62.7
Short access day 1 total infusions0.70.91.80.30.4-1.21.3
Short access day 10 total infusions0.40.51.30.51.20.6-0.4
Short access total infusions0.10.20.30.20.6-0.30.4
Short access day 1 locomotion0.30.40.8-0.4-0.1-0.90.7
Short access day 10 total locomotion1.12.12.6-1.5-1.5-1.61.3
Short access total locomotion1.01.22.0-0.8-1.0-1.41.0
One hour access (0.3 mA shock)0.20.20.3-0.5-0.4-0.60.4
Compulsive drug intake0.50.61.40.91.20.4-0.0
One hour access (shock baseline)0.20.20.4-0.5-0.6-0.60.1
Social response proportion1.41.63.21.81.70.40.2
Social responses1.11.42.41.30.8-1.11.6
Social time1.11.53.41.81.0-0.81.0
Soleus weight1.64.99.22.63.01.6-1.1
Bone: stiffness1.21.93.01.50.9-1.21.7
Tibialis anterior weight1.44.710.63.32.2-0.71.6
Time to tail flick, vehicle, before self-admin0.50.50.80.90.80.8-0.0
Time to tail flick, vehicle, after self-admin1.01.42.5-0.90.41.6-1.4
Time to tail flick, test, before self-admin0.20.20.60.4-0.2-0.40.8
Time to tail flick, test, after self-admin0.30.30.7-0.6-0.80.3-0.4
Delta time to tail flick, vehicle, before/after SA0.80.72.1-1.4-0.60.3-0.6
Delta time to tail flick, test, before/after SA0.50.51.3-1.1-0.7-0.0-0.4
Tibia length0.00.00.10.2-0.2-0.30.0
Ambulatory time before self-admin0.10.20.7-0.2-0.90.2-0.1
Ambulatory time after self-admin0.91.02.30.50.91.5-0.8
Bone: tissue strength0.60.60.9-0.9-0.60.6-0.8
Total heroin consumption1.31.63.21.31.81.0-0.5
Bone: trabecular number1.62.66.51.22.51.6-0.3
Bone: trabecular spacing1.01.32.90.4-1.3-1.70.7
Bone: trabecular thickness0.40.50.9-1.00.50.9-0.2
Bone: trabecular tissue density0.81.23.7-1.9-1.10.20.1
Water consumed over 24 hours0.81.12.3-0.30.51.4-1.5
Number of responses in last shaping day0.40.41.0-1.0-0.70.0-0.2