Kdm3b

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 LHb gene expression Kdm3b 0.23 0.16 8.0e-03 0.08 0.06 0.03 0.05 5.5e-03 1.7e-02 5.5e-02 2.1e-02
2 NAcc intron excision ratio chr18_26689613_26690444 0.02 0.01 9.4e-03 0.02 0 0.01 0.01 1.4e-03 7.7e-02 1.3e-02 6.8e-03
3 PL gene expression Kdm3b 0.02 0.02 6.9e-03 0.02 0.01 0.01 0.01 6.4e-03 2.1e-02 7.9e-03 1.7e-02

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
Bone: apparent density2.13.65.80.22.4-2.2
Area under the delay curve2.22.65.12.31.3-1.0
BMI with tail4.214.524.8-5.0-3.22.9
BMI without tail3.711.323.3-4.8-2.52.1
Body weight3.515.533.2-5.8-2.92.2
Weight adjusted by age1.62.44.6-2.1-0.81.4
Bone surface1.93.55.00.72.2-2.2
Bone volume1.83.24.70.42.1-2.2
Breakpoint value in progressive ratio session0.30.30.70.80.3-0.5
Number of licking bursts0.20.30.60.80.3-0.3
Context. condit. distance diff. score0.10.10.2-0.4-0.40.2
Locomotion velocity, session 10.10.20.2-0.40.3-0.4
Locomotion distance, session 10.10.10.2-0.1-0.50.2
Locomotion velocity, session 21.21.42.2-0.4-1.41.5
Locomotion distance, session 20.20.30.70.80.2-0.2
Locomotion velocity, session 30.30.30.7-0.4-0.90.0
Locomotion distance, session 30.40.51.00.30.5-1.0
Stereotopy head waving bouts, day 30.91.12.61.60.4-0.6
Stereotopy head waving duration, day 30.40.50.60.7-0.50.8
Locomotion velocity, session 70.70.81.1-0.70.8-1.1
Locomotion distance, session 71.72.13.20.11.8-1.8
Stereotopy head waving bouts, day 71.01.22.2-0.3-1.11.5
Stereotopy head waving duration, day 72.02.44.4-0.1-1.72.1
Locomotion velocity, session 82.53.04.60.0-2.12.1
Locomotion distance, session 80.10.20.5-0.2-0.70.1
Degree of sensitization distance0.20.20.5-0.70.40.1
Degree of sensitization stereotypy1.81.93.4-0.1-1.51.9
Conditioned locomotion0.60.61.2-0.10.8-1.1
Cocaine response after cond. corrected0.50.61.5-1.2-0.3-0.4
Cocaine response after cond. not corrected0.20.30.5-0.6-0.70.2
Cocaine response before conditioning1.72.04.42.1-0.71.1
Saline control response0.30.40.60.8-0.70.4
Bone: connectivity density2.74.25.41.52.3-2.2
Bone: cortical apparent density0.40.51.11.0-0.60.2
Bone: cortical area1.21.92.71.21.3-1.6
Bone: cortical porosity0.70.81.9-1.4-0.50.4
Bone: cortical porosity0.50.61.6-1.3-0.20.2
Bone: cortical thickness0.71.21.81.40.7-1.1
Bone: cortical thickness0.20.30.40.30.5-0.6
Bone: cortical tissue density0.30.51.01.0-0.60.2
Condit. Reinf. active minus inactive responses1.51.72.81.70.9-1.1
Condit. Reinf. active-inactive response ratio0.50.61.21.10.4-0.5
Condit. Reinf. active responses2.12.63.61.31.5-1.9
Condit. Reinf. inactive responses2.12.64.50.71.7-2.1
Incentive salience index mean1.01.22.11.40.8-1.0
Condit. Reinf. lever presses0.40.60.60.70.8-0.7
Condit. Reinf. active minus inactive responses1.72.13.81.91.0-1.2
Condit. Reinf. active-inactive response ratio0.50.61.0-0.10.8-1.0
Condit. Reinf. active responses3.04.210.03.21.1-1.2
Condit. Reinf. inactive responses2.63.49.73.10.5-0.3
Condit. Reinf. lever presses1.92.72.71.61.7-1.6
Condit. Reinf. lever reinforcers received2.73.89.73.10.9-0.9
Conditioned reinforcement - actives0.30.51.0-0.3-0.71.0
Conditioned reinforcement - inactives0.10.10.40.6-0.10.1
Conditioned locomotion0.20.20.3-0.3-0.60.4
Patch foraging indifference point 0 sec0.40.71.71.3-0.30.4
Patch foraging indifference point AUC3.44.97.22.72.2-1.6
Delay disc. indifference point, 0s delay1.01.01.91.41.0-0.6
Delay disc. indifference point, 16s delay2.12.45.32.31.0-0.9
Delay disc. indifference point, 2s delay1.11.21.51.01.2-1.0
Delay disc. indifference point, 24s delay0.81.01.10.91.0-1.1
Delay disc. indifference point, 4s delay1.41.52.31.01.5-1.1
Delay disc. indifference point, 8s delay2.53.06.12.51.2-1.1
Indifference point function ln k6.511.416.9-4.1-3.32.5
Indifference point function log k6.511.416.9-4.1-3.32.5
Patch foraging total patch changes 0 sec0.30.61.71.3-0.20.2
Patch foraging total patch changes 12 sec4.86.215.03.91.7-0.9
Patch foraging total patch changes 18 sec5.88.910.62.73.3-3.0
Patch foraging total patch changes 24 sec1.22.03.11.81.3-1.1
Patch foraging total patch changes 6 sec2.13.25.62.41.7-1.1
Patch foraging time to switch 0 sec0.00.10.2-0.50.00.2
Patch foraging water rate 0 sec0.00.00.0-0.00.00.0
Patch foraging water rate 12 sec0.40.82.2-1.50.4-0.3
Patch foraging water rate 18 sec0.20.30.4-0.6-0.50.6
Patch foraging water rate 24 sec0.10.10.3-0.60.2-0.3
Patch foraging water rate 6 sec0.20.40.8-0.40.4-0.9
Seeking ratio, delayed vs. immediate footshock0.20.20.50.70.10.3
Distance traveled before self-admin2.22.94.40.42.0-2.1
Distance traveled after self-admin2.12.64.11.21.5-2.0
Extensor digitorum longus weight1.66.312.1-3.5-1.81.9
Bone: elastic displacement1.21.31.4-1.1-1.21.2
Bone: elastic work2.33.03.7-1.5-1.71.9
Bone: endosteal estimation0.10.30.70.20.8-0.5
Bone: endosteal perimeter0.00.00.0-0.1-0.2-0.2
Epididymis fat weight2.27.48.8-3.0-2.72.4
Delta time in closed arm before/after self-admin2.72.53.8-1.0-2.01.6
Delta time in open arm before/after self-admin1.11.11.60.31.3-1.2
Diff in mean of infusions in LGA sessions0.10.10.1-0.4-0.3-0.1
Delay discount exponential model param2.52.84.8-2.2-1.41.2
Extinction: sum of active levers before priming0.91.02.1-0.20.9-1.4
Active lever presses in extinction session 61.21.21.81.30.7-1.1
Bone: final force0.30.50.90.40.7-1.0
Bone: final moment0.20.30.5-0.10.6-0.7
Food consumed during 24 hour testing period0.71.01.2-0.81.1-1.0
Glucose2.33.610.6-3.2-0.20.5
Heart weight1.32.04.0-2.0-0.81.1
Delay discount hyperbolic model param2.83.14.8-2.2-1.61.4
Intermittent access intake day 1-15 change1.32.65.1-0.3-2.31.6
Intermittent access intake escalation1.42.85.5-0.4-2.31.7
Intermittent access intake escalation 21.71.93.7-0.5-1.91.3
Intermitt. access day 1 inactive lever presses0.10.30.90.90.1-0.2
Intermitt. access day 15 inactive lever presses0.10.30.5-0.0-0.60.7
Intermitt. access escalation Index0.10.20.4-0.6-0.5-0.1
Intermittent access day 1 total infusions0.30.50.70.6-0.60.8
Intermittent access day 15 total infusions2.03.04.90.2-2.22.0
Intermittent access terminal intake (last 3 days)3.24.26.70.2-2.62.4
Intermittent access total infusions1.61.93.1-0.3-1.61.8
Intermittent access day 1 locomotion0.30.40.80.3-0.60.9
Intermittent access day 15 total locomotion1.42.63.0-1.3-1.71.7
Intermittent access total locomotion1.51.92.8-0.7-1.51.7
Intermittent access standard deviation1.22.63.90.0-2.02.0
Left kidney weight0.31.33.8-1.90.1-0.1
Right kidney weight0.10.41.0-1.00.00.1
Cocaine induced anxiety0.81.12.0-0.61.4-1.0
Post-drug Anxiety0.80.81.2-1.10.9-0.7
Baseline Anxiety1.21.42.1-0.9-1.51.0
Tail length0.20.71.8-1.30.1-0.4
Length with tail0.41.74.7-2.2-0.60.0
Length without tail0.20.61.5-1.2-0.50.3
Times rat made contact with spout2.02.33.7-0.31.7-1.9
Lifetime Intake2.32.84.4-0.5-1.92.1
Liver weight, left0.20.41.01.0-0.00.5
Liver weight, right1.32.25.52.3-0.80.7
Locomotor activity0.30.50.60.80.7-0.7
Locomotor testing distance0.40.71.10.40.9-1.1
Locomotor testing rearing0.30.51.11.10.6-0.3
Locomotion in novel chamber1.01.32.8-0.1-1.11.7
Locomotion in novel chamber post-restriction0.71.22.1-0.6-1.01.4
Fecal boli incidents, locomotor time 10.30.51.1-0.3-0.51.1
Change in fecal boli incidents, locomotor task0.30.30.8-0.0-0.90.5
Time >=10cm from walls, locomotor time 10.20.20.3-0.40.2-0.5
Bouts of movement, locomotor time 10.30.41.01.00.3-0.3
Total resting periods, locomotor time 10.20.30.80.90.10.0
Rest time, locomotor task time 10.40.51.1-0.3-1.00.6
Distance moved, locomotor task time 10.50.81.20.11.0-1.1
Vertical activity count, locomotor time 10.61.42.1-0.51.4-1.4
Time >=10cm from walls, locomotor time 21.42.05.6-2.40.6-0.3
Bouts of movement, locomotor time 20.20.30.60.5-0.80.4
Total resting periods, locomotor time 20.10.20.60.2-0.80.3
Rest time, locomotor task time 20.50.61.2-1.1-0.80.3
Distance moved, locomotor task time 20.60.71.10.11.1-1.0
Vertical activity count, locomotor time 22.02.75.30.42.3-1.7
Light reinforcement 10.41.01.71.30.7-1.0
Light reinforcement 22.74.14.92.22.1-1.7
Bone: marrow area0.10.30.50.20.7-0.4
Bone: maximum diameter0.91.82.31.31.1-1.5
Bone: maximum force0.10.20.4-0.40.4-0.6
Bone: maximum moment0.20.30.7-0.80.2-0.4
Mean time between licks in bursts0.20.51.4-1.2-0.0-0.2
Mean num. licks in bursts0.30.51.0-1.00.5-0.5
Cd content in liver0.70.81.01.00.8-0.8
Co content in liver1.31.52.3-0.71.3-1.5
Cu content in liver1.92.34.42.11.3-0.9
Fe content in liver4.75.79.60.93.1-2.6
K content in liver1.01.01.41.2-0.61.1
Mg content in liver0.90.92.31.5-0.40.6
Mn content in liver0.50.60.9-0.5-1.00.7
Na content in liver1.41.42.10.41.4-1.4
Rb content in liver0.91.11.40.7-1.21.2
Se content in liver0.20.20.50.40.7-0.3
Sr content in liver1.51.31.70.91.2-1.3
Zn content in liver3.23.59.93.10.7-0.5
Bone: minimum diameter0.81.52.40.41.5-1.4
Time in familiar zone, hab. session 10.40.40.7-0.80.3-0.7
Time in novel zone, hab. session 10.50.51.51.20.20.3
Total zone transitions, hab. session 10.81.11.7-1.30.8-1.0
Total locomotion distance, hab. session 11.62.33.60.61.7-1.9
Locomotion velocity, hab. session 11.31.83.30.51.4-1.8
Time in familiar zone, hab. session 21.61.73.92.00.6-0.8
Time in novel zone, hab. session 21.01.02.8-1.7-0.10.3
Total zone transitions, hab. session 20.20.20.5-0.4-0.70.2
Total locomotion distance, hab. session 20.30.30.80.40.1-0.9
Locomotion velocity, hab. session 20.30.41.00.20.2-1.0
Novel to familiar place preference ratio0.50.61.6-1.2-0.30.3
Novelty place preference0.70.71.7-1.3-0.50.5
Time in novel zone, NPP test0.70.71.6-1.3-0.50.5
Total zone transitions, NPP test0.10.10.2-0.30.0-0.5
Total locomotion distance, NPP test1.01.42.50.61.1-1.6
Locomotion velocity, NPP test1.01.52.60.71.2-1.6
Intraocular pressure2.53.66.3-2.5-1.81.1
Delta distance traveled before/after self-admin0.70.81.81.30.2-0.7
Delta ambulatory time before/after self-admin1.41.72.31.31.1-1.5
Parametrial fat weight0.71.72.1-1.1-1.41.5
Pavlov. Cond. lever latency0.10.10.10.20.3-0.3
Pavlov. Cond. magazine entry latency0.10.10.2-0.0-0.40.5
Pavlov. Cond. change in total contacts0.70.71.30.01.1-1.0
Pavlov. Cond. index score0.00.00.1-0.20.1-0.0
Pavlov. Cond. latency score0.10.10.2-0.4-0.10.2
Pavlov. Cond. lever contacts0.10.10.20.0-0.20.5
Pavlov. Cond. magazine entry number0.00.00.1-0.0-0.10.3
Pavlov. Cond. intertrial magazine entries1.82.24.00.71.5-2.0
Pavlov. Cond. lever-magazine prob. diff.0.00.00.1-0.10.3-0.1
Pavlov. Cond. response bias0.00.00.0-0.00.2-0.2
Pavlov. Cond. lever latency0.91.31.5-1.2-1.11.0
Pavlov. Cond. magazine entry latency0.30.40.50.30.7-0.7
Pavlov. Cond. change in total contacts1.11.83.21.81.0-1.2
Pavlov. Cond. index score0.81.11.41.20.9-1.0
Pavlov. Cond. latency score0.60.81.21.10.8-0.7
Pavlov. Cond. lever contacts0.91.31.41.21.0-1.2
Pavlov. Cond. magazine entry number0.40.41.3-1.1-0.10.0
Pavlov. Cond. intertrial magazine entries1.21.83.20.11.5-1.8
Pavlov. Cond. lever-magazine prob. diff.0.81.11.31.20.9-1.0
Pavlov. Cond. response bias1.41.92.51.61.3-1.3
Time in closed arm before self-admin1.01.22.8-1.70.7-0.6
Time in closed arm after self-admin0.40.41.3-1.10.0-0.2
Time in open arm before self-admin1.31.41.81.3-1.30.9
Time in open arm after self-admin0.10.10.20.4-0.1-0.1
Bone: periosteal estimation0.40.91.20.51.1-1.1
Bone: periosteal perimeter0.00.10.10.3-0.2-0.3
Bone: post-yield work0.00.10.1-0.30.1-0.3
Progressive ratio test 1 active lever presses0.80.91.7-0.4-0.91.3
Progressive ratio test 1 breakpoint0.91.12.0-0.4-1.11.4
Progressive ratio test 1 inactive lever presses0.81.12.10.2-1.11.4
Progressive ratio test 2 active lever presses0.91.11.6-0.5-1.11.3
Progressive ratio test 2 breakpoint0.70.81.3-0.5-1.01.1
Progressive ratio test 2 inactive lever presses0.60.91.5-0.3-1.21.1
Incentive Sensitization - Responses0.00.10.1-0.30.2-0.2
Incentive Sensitization - Breakpoint0.10.10.2-0.30.4-0.3
Sum of active levers in priming session hrs 5-67.46.97.52.72.4-2.7
Progressive ratio0.10.20.20.5-0.30.4
Food seeking constrained by brief footshock0.20.20.50.70.2-0.2
Seeking ratio, punishment vs. effort0.00.00.1-0.1-0.30.2
Retroperitoneal fat weight1.35.47.5-2.7-2.12.1
Reaction time number correct0.40.82.4-1.5-0.0-0.0
Reaction time mean minus median0.71.82.80.31.6-1.7
Reaction time mean minus median AUC1.33.34.9-0.22.2-2.2
Reaction time num false alarms0.10.20.4-0.60.10.3
Reaction time num false alarms AUC0.40.60.9-1.0-0.30.9
Reaction time trials correct on left0.40.82.4-1.5-0.0-0.0
Reaction time trials on left0.40.82.4-1.5-0.0-0.0
Reaction time mean0.10.10.2-0.40.20.1
Reaction time mean AUC0.00.00.0-0.20.2-0.1
Median of all reaction times0.40.50.8-0.7-0.50.9
Reaction time omissions0.00.00.0-0.1-0.10.0
Reaction time false alarm rate0.10.10.3-0.2-0.10.6
Reaction time premature initiation rate1.01.42.00.81.4-1.3
Reaction time premature initiations0.40.81.30.31.1-1.0
Std. dev. reaction times1.62.94.3-0.42.1-2.1
Reaction time trials completed0.40.82.4-1.5-0.0-0.0
Reaction time trials AUC0.40.82.3-1.50.1-0.1
Run reversals in cocaine runway, females0.20.20.30.5-0.20.4
Run reversals in cocaine runway, males1.21.22.60.2-1.01.6
Latency to leave start box in cocaine runway0.70.81.71.30.2-0.8
Latency to leave start box in cocaine runway, F0.30.40.80.9-0.2-0.6
Latency to leave start box in cocaine runway, M0.30.20.70.80.1-0.2
Std. dev. time between licks in bursts0.10.10.2-0.10.4-0.4
Total sessions with >9 infusions2.83.44.4-1.3-2.02.1
Short access day 1 total inactive lever presses0.50.60.80.70.9-0.8
Short access day 10 total inactive lever presses0.30.81.30.50.9-1.1
Short access day 1 total infusions1.21.62.6-0.0-1.51.6
Short access day 10 total infusions0.20.20.4-0.0-0.60.5
Short access total infusions1.62.13.2-0.1-1.81.8
Short access day 1 locomotion0.81.01.9-1.4-1.00.4
Short access day 10 total locomotion1.62.93.2-1.7-1.81.6
Short access total locomotion1.51.82.5-0.9-1.61.4
One hour access (0.3 mA shock)1.11.31.9-0.1-1.41.4
Compulsive drug intake0.40.50.8-0.90.6-0.6
One hour access (shock baseline)1.11.72.50.4-1.61.6
Social response proportion2.62.95.2-0.3-2.31.9
Social responses0.50.72.01.4-0.20.1
Social time5.16.910.60.1-3.23.2
Soleus weight3.710.814.2-2.5-3.53.8
Bone: stiffness0.20.40.60.20.7-0.8
Tibialis anterior weight1.55.26.8-2.6-2.41.7
Time to tail flick, vehicle, before self-admin1.92.02.21.31.5-1.4
Time to tail flick, vehicle, after self-admin0.20.20.40.60.3-0.4
Time to tail flick, test, before self-admin0.60.60.9-0.70.9-0.7
Time to tail flick, test, after self-admin0.70.81.20.8-0.61.1
Delta time to tail flick, vehicle, before/after SA3.12.94.8-0.6-2.21.9
Delta time to tail flick, test, before/after SA2.72.84.80.5-1.82.2
Tibia length0.20.71.3-1.10.4-0.8
Ambulatory time before self-admin1.31.93.00.21.6-1.7
Ambulatory time after self-admin3.03.55.51.21.9-2.3
Bone: tissue strength0.20.20.5-0.20.1-0.7
Total heroin consumption0.00.00.10.3-0.0-0.2
Bone: trabecular number1.52.53.80.11.9-1.9
Bone: trabecular spacing1.92.54.20.1-2.11.8
Bone: trabecular thickness0.70.91.70.51.3-0.9
Bone: trabecular tissue density0.91.32.7-0.5-1.61.0
Water consumed over 24 hours5.26.911.80.43.0-3.4
Number of responses in last shaping day0.60.71.31.2-0.50.7