Kcnj2

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Adipose mRNA stability Kcnj2 0.03 0.01 1.5e-03 0.01 0.01 0.01 0.01 7.8e-03 4.0e-02 5.5e-02 6.1e-02
2 Adipose gene expression Kcnj2 0.08 0.04 1.2e-07 0.01 0.05 0.05 0.04 3.1e-02 2.5e-06 4.8e-06 1.1e-05
3 BLA gene expression Kcnj2 0.17 0.07 1.6e-06 0.03 0.07 0.07 0.08 1.4e-02 2.0e-04 1.7e-04 7.0e-05

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
Bone: apparent density1.42.44.72.2-0.01.6
Area under the delay curve0.70.92.30.50.2-1.5
BMI with tail0.72.33.6-1.91.0-1.5
BMI without tail1.03.26.2-2.5-0.1-1.8
Body weight0.31.31.7-1.01.0-1.3
Weight adjusted by age0.50.71.7-1.30.6-0.2
Bone surface6.311.523.64.92.62.1
Bone volume4.37.717.34.22.01.4
Breakpoint value in progressive ratio session0.81.02.20.50.71.5
Number of licking bursts0.30.61.40.51.20.1
Context. condit. distance diff. score0.40.41.1-1.1-0.40.1
Locomotion velocity, session 10.60.71.50.10.71.2
Locomotion distance, session 10.40.51.5-1.20.10.3
Locomotion velocity, session 20.70.81.5-0.1-1.01.2
Locomotion distance, session 20.20.30.9-0.20.21.0
Locomotion velocity, session 30.30.30.5-0.60.70.1
Locomotion distance, session 30.40.41.00.51.00.0
Stereotopy head waving bouts, day 30.40.41.0-0.20.51.0
Stereotopy head waving duration, day 30.50.61.70.10.31.3
Locomotion velocity, session 71.21.32.01.20.61.4
Locomotion distance, session 70.81.11.31.01.10.9
Stereotopy head waving bouts, day 71.01.12.9-0.5-0.41.7
Stereotopy head waving duration, day 71.51.85.3-0.3-0.12.3
Locomotion velocity, session 80.91.12.60.80.31.6
Locomotion distance, session 80.30.40.8-0.60.00.9
Degree of sensitization distance0.30.30.70.4-0.00.8
Degree of sensitization stereotypy0.91.01.4-1.1-0.71.2
Conditioned locomotion0.80.92.5-0.20.5-1.6
Cocaine response after cond. corrected0.50.61.50.10.4-1.2
Cocaine response after cond. not corrected0.20.30.50.20.5-0.7
Cocaine response before conditioning0.40.51.4-0.10.21.2
Saline control response1.11.52.3-1.3-0.6-1.5
Bone: connectivity density2.23.45.82.40.62.0
Bone: cortical apparent density3.85.211.1-3.3-1.81.1
Bone: cortical area0.61.02.80.11.70.3
Bone: cortical porosity1.31.41.81.4-0.91.3
Bone: cortical porosity0.70.82.21.5-0.20.3
Bone: cortical thickness7.212.027.4-5.2-2.8-0.9
Bone: cortical thickness1.41.74.3-2.1-0.4-0.8
Bone: cortical tissue density3.75.010.7-3.3-1.81.1
Condit. Reinf. active minus inactive responses0.30.30.9-0.90.1-0.3
Condit. Reinf. active-inactive response ratio0.10.10.4-0.10.10.6
Condit. Reinf. active responses0.50.61.6-1.20.1-0.4
Condit. Reinf. inactive responses0.30.40.9-0.90.4-0.5
Incentive salience index mean0.20.30.7-0.9-0.10.2
Condit. Reinf. lever presses0.60.81.5-1.2-1.00.2
Condit. Reinf. active minus inactive responses0.10.20.5-0.00.20.7
Condit. Reinf. active-inactive response ratio0.30.40.5-0.6-0.50.7
Condit. Reinf. active responses0.30.40.80.30.50.9
Condit. Reinf. inactive responses0.40.50.80.40.70.9
Condit. Reinf. lever presses0.50.71.70.2-0.61.3
Condit. Reinf. lever reinforcers received0.20.30.40.30.70.7
Conditioned reinforcement - actives0.30.51.11.00.30.5
Conditioned reinforcement - inactives0.40.61.70.2-0.31.3
Conditioned locomotion0.10.20.4-0.6-0.3-0.2
Patch foraging indifference point 0 sec1.22.23.5-1.8-1.9-0.1
Patch foraging indifference point AUC0.60.91.3-1.1-0.9-0.8
Delay disc. indifference point, 0s delay0.30.30.9-0.9-0.30.1
Delay disc. indifference point, 16s delay0.60.71.31.10.4-0.8
Delay disc. indifference point, 2s delay0.30.30.60.50.2-0.7
Delay disc. indifference point, 24s delay0.80.91.81.30.2-0.9
Delay disc. indifference point, 4s delay1.41.43.6-0.70.4-1.9
Delay disc. indifference point, 8s delay0.91.13.30.10.0-1.8
Indifference point function ln k0.20.30.9-0.2-0.10.9
Indifference point function log k0.20.30.9-0.2-0.10.9
Patch foraging total patch changes 0 sec1.02.03.1-1.8-1.6-0.5
Patch foraging total patch changes 12 sec1.31.72.9-1.7-1.1-1.0
Patch foraging total patch changes 18 sec2.94.46.5-2.6-2.4-1.1
Patch foraging total patch changes 24 sec0.20.40.9-0.9-0.5-0.3
Patch foraging total patch changes 6 sec3.24.96.6-2.6-2.6-1.2
Patch foraging time to switch 0 sec0.30.71.31.10.70.5
Patch foraging water rate 0 sec1.42.95.1-2.3-1.3-1.4
Patch foraging water rate 12 sec0.40.82.3-1.5-0.20.0
Patch foraging water rate 18 sec0.50.71.6-1.3-0.30.7
Patch foraging water rate 24 sec0.60.81.6-0.6-1.3-0.7
Patch foraging water rate 6 sec0.81.12.7-1.7-0.60.5
Seeking ratio, delayed vs. immediate footshock1.31.52.5-1.0-1.1-1.6
Distance traveled before self-admin0.81.11.5-1.2-1.0-0.8
Distance traveled after self-admin0.60.81.2-1.1-1.0-0.2
Extensor digitorum longus weight0.10.40.60.50.6-0.7
Bone: elastic displacement3.03.58.1-2.8-1.3-0.8
Bone: elastic work1.01.33.2-1.8-0.1-0.8
Bone: endosteal estimation14.932.755.87.56.41.1
Bone: endosteal perimeter14.230.247.56.96.31.8
Epididymis fat weight1.03.65.2-2.2-0.8-2.3
Delta time in closed arm before/after self-admin0.00.00.00.0-0.20.0
Delta time in open arm before/after self-admin0.80.81.21.10.51.0
Diff in mean of infusions in LGA sessions0.91.12.5-1.6-0.3-0.8
Delay discount exponential model param0.91.02.6-0.6-0.21.6
Extinction: sum of active levers before priming1.11.21.81.40.81.1
Active lever presses in extinction session 62.02.03.82.01.30.6
Bone: final force1.93.05.91.82.40.3
Bone: final moment1.22.03.71.41.90.4
Food consumed during 24 hour testing period0.50.81.20.1-1.01.1
Glucose0.71.02.30.11.5-0.9
Heart weight1.21.93.8-2.0-1.1-0.8
Delay discount hyperbolic model param0.91.02.5-0.6-0.31.6
Intermittent access intake day 1-15 change0.40.81.4-0.3-1.2-1.0
Intermittent access intake escalation0.61.31.9-0.5-1.3-1.4
Intermittent access intake escalation 21.72.03.1-0.8-1.8-1.4
Intermitt. access day 1 inactive lever presses0.31.32.4-1.5-0.61.0
Intermitt. access day 15 inactive lever presses0.20.40.7-0.8-0.20.7
Intermitt. access escalation Index0.40.50.8-0.4-0.9-0.8
Intermittent access day 1 total infusions0.50.91.80.71.40.6
Intermittent access day 15 total infusions0.10.20.40.20.4-0.6
Intermittent access terminal intake (last 3 days)0.10.10.30.60.3-0.1
Intermittent access total infusions0.60.71.70.51.30.2
Intermittent access day 1 locomotion0.10.10.4-0.70.00.1
Intermittent access day 15 total locomotion1.01.83.5-1.9-0.8-1.1
Intermittent access total locomotion0.70.82.1-1.5-0.3-0.4
Intermittent access standard deviation0.30.61.20.10.8-1.1
Left kidney weight0.20.91.00.91.0-0.9
Right kidney weight0.20.91.90.91.40.1
Cocaine induced anxiety0.10.20.5-0.0-0.3-0.7
Post-drug Anxiety0.10.10.10.3-0.3-0.2
Baseline Anxiety0.70.82.10.6-0.11.4
Tail length0.20.91.3-0.9-1.2-0.8
Length with tail0.10.61.60.4-0.2-1.3
Length without tail0.41.22.10.91.5-0.7
Times rat made contact with spout1.11.21.9-1.2-1.4-0.7
Lifetime Intake0.50.71.50.61.20.3
Liver weight, left0.91.42.01.31.40.8
Liver weight, right0.10.30.60.00.8-0.4
Locomotor activity0.20.20.7-0.80.00.2
Locomotor testing distance0.91.75.0-2.2-0.30.1
Locomotor testing rearing3.57.115.6-3.9-2.2-0.9
Locomotion in novel chamber0.91.13.10.5-0.11.8
Locomotion in novel chamber post-restriction0.20.41.20.0-1.10.1
Fecal boli incidents, locomotor time 10.71.02.81.70.1-0.3
Change in fecal boli incidents, locomotor task1.71.62.5-1.5-1.6-0.3
Time >=10cm from walls, locomotor time 11.11.21.91.41.10.8
Bouts of movement, locomotor time 11.31.42.0-1.4-1.3-0.8
Total resting periods, locomotor time 10.91.01.3-0.9-0.9-1.1
Rest time, locomotor task time 10.50.61.3-0.0-1.1-0.8
Distance moved, locomotor task time 10.71.02.1-0.31.50.8
Vertical activity count, locomotor time 10.61.42.5-0.71.21.6
Time >=10cm from walls, locomotor time 21.21.82.8-1.7-1.40.7
Bouts of movement, locomotor time 20.10.10.4-0.2-0.60.0
Total resting periods, locomotor time 20.10.20.6-0.2-0.8-0.3
Rest time, locomotor task time 21.01.22.51.6-0.0-1.1
Distance moved, locomotor task time 21.01.22.3-1.50.80.8
Vertical activity count, locomotor time 20.71.01.9-1.00.21.4
Light reinforcement 10.20.51.0-0.00.7-1.0
Light reinforcement 22.43.76.91.92.6-0.6
Bone: marrow area14.631.953.87.36.40.9
Bone: maximum diameter8.215.321.34.64.62.0
Bone: maximum force2.24.06.52.32.50.4
Bone: maximum moment1.42.54.01.82.00.5
Mean time between licks in bursts0.40.92.40.20.41.5
Mean num. licks in bursts0.60.91.8-0.8-1.3-0.6
Cd content in liver0.50.61.2-1.1-0.7-0.2
Co content in liver2.12.54.1-1.8-2.00.5
Cu content in liver0.10.10.30.50.2-0.1
Fe content in liver0.20.30.4-0.3-0.60.6
K content in liver1.51.42.01.41.40.6
Mg content in liver0.30.30.60.60.10.8
Mn content in liver0.70.81.31.20.30.9
Na content in liver0.80.81.41.10.01.2
Rb content in liver1.11.33.8-0.30.3-2.0
Se content in liver0.60.82.00.50.2-1.4
Sr content in liver2.21.93.4-0.5-1.41.9
Zn content in liver0.40.40.80.90.70.1
Bone: minimum diameter8.615.624.64.65.01.2
Time in familiar zone, hab. session 10.40.41.10.2-1.1-0.2
Time in novel zone, hab. session 10.60.61.2-0.61.10.3
Total zone transitions, hab. session 10.40.61.4-1.2-0.40.4
Total locomotion distance, hab. session 10.50.71.9-1.4-0.3-0.1
Locomotion velocity, hab. session 10.30.41.2-1.10.20.1
Time in familiar zone, hab. session 20.60.61.5-0.5-1.2-0.2
Time in novel zone, hab. session 22.22.24.21.12.01.2
Total zone transitions, hab. session 20.20.30.5-0.7-0.60.1
Total locomotion distance, hab. session 20.30.41.0-1.0-0.5-0.2
Locomotion velocity, hab. session 20.30.30.8-0.9-0.3-0.4
Novel to familiar place preference ratio0.10.10.2-0.40.40.2
Novelty place preference0.20.20.3-0.30.50.6
Time in novel zone, NPP test0.30.30.6-0.50.30.8
Total zone transitions, NPP test0.40.50.9-0.9-0.80.2
Total locomotion distance, NPP test1.01.43.7-1.9-0.5-0.5
Locomotion velocity, NPP test1.21.63.5-1.9-0.3-1.2
Intraocular pressure0.40.50.9-0.30.80.9
Delta distance traveled before/after self-admin0.30.40.6-0.4-0.60.8
Delta ambulatory time before/after self-admin0.20.20.50.3-0.10.7
Parametrial fat weight1.43.37.52.71.50.1
Pavlov. Cond. lever latency2.32.96.12.51.6-0.1
Pavlov. Cond. magazine entry latency1.52.02.7-1.6-1.7-0.9
Pavlov. Cond. change in total contacts2.93.16.2-2.5-1.80.0
Pavlov. Cond. index score1.52.03.9-2.0-1.2-0.7
Pavlov. Cond. latency score1.62.04.2-2.0-1.3-0.4
Pavlov. Cond. lever contacts1.92.34.1-2.0-1.7-0.3
Pavlov. Cond. magazine entry number1.41.83.11.81.20.9
Pavlov. Cond. intertrial magazine entries0.00.10.2-0.10.40.1
Pavlov. Cond. lever-magazine prob. diff.1.21.52.9-1.7-1.0-0.8
Pavlov. Cond. response bias1.51.93.3-1.8-1.4-0.6
Pavlov. Cond. lever latency1.01.33.0-0.8-0.6-1.7
Pavlov. Cond. magazine entry latency0.40.51.31.2-0.2-0.0
Pavlov. Cond. change in total contacts0.50.71.21.0-0.21.1
Pavlov. Cond. index score0.60.81.61.30.30.9
Pavlov. Cond. latency score0.60.81.61.20.50.9
Pavlov. Cond. lever contacts0.91.23.20.70.21.8
Pavlov. Cond. magazine entry number0.30.30.8-0.90.20.4
Pavlov. Cond. intertrial magazine entries1.32.03.01.71.60.7
Pavlov. Cond. lever-magazine prob. diff.0.60.81.71.30.20.9
Pavlov. Cond. response bias0.60.81.21.10.11.1
Time in closed arm before self-admin0.20.30.5-0.7-0.1-0.5
Time in closed arm after self-admin1.21.32.9-1.7-0.9-0.4
Time in open arm before self-admin0.10.20.4-0.6-0.3-0.2
Time in open arm after self-admin0.80.91.41.20.60.9
Bone: periosteal estimation8.718.427.65.25.30.9
Bone: periosteal perimeter6.010.414.73.83.81.3
Bone: post-yield work2.63.86.52.52.20.1
Progressive ratio test 1 active lever presses0.70.82.2-1.50.2-0.5
Progressive ratio test 1 breakpoint0.60.71.8-1.30.2-0.5
Progressive ratio test 1 inactive lever presses0.50.81.8-1.4-0.60.5
Progressive ratio test 2 active lever presses0.20.30.6-0.80.3-0.2
Progressive ratio test 2 breakpoint0.20.30.7-0.80.3-0.3
Progressive ratio test 2 inactive lever presses0.20.30.7-0.40.1-0.8
Incentive Sensitization - Responses0.00.00.1-0.20.20.3
Incentive Sensitization - Breakpoint0.00.00.1-0.30.10.2
Sum of active levers in priming session hrs 5-60.40.30.5-0.7-0.4-0.6
Progressive ratio1.32.14.52.11.00.8
Food seeking constrained by brief footshock0.50.60.70.8-0.7-0.6
Seeking ratio, punishment vs. effort1.01.52.0-1.4-1.3-0.9
Retroperitoneal fat weight0.41.63.4-1.8-0.7-1.0
Reaction time number correct0.71.32.21.50.71.1
Reaction time mean minus median0.40.91.41.2-0.31.1
Reaction time mean minus median AUC1.02.55.12.31.21.0
Reaction time num false alarms1.01.52.80.71.7-1.1
Reaction time num false alarms AUC1.21.93.01.51.7-0.6
Reaction time trials correct on left0.71.32.21.50.71.1
Reaction time trials on left0.81.52.41.60.71.2
Reaction time mean0.71.23.20.0-0.61.8
Reaction time mean AUC0.91.44.00.2-0.42.0
Median of all reaction times0.81.12.9-0.3-0.61.7
Reaction time omissions1.42.03.51.50.61.9
Reaction time false alarm rate0.60.81.30.41.0-1.1
Reaction time premature initiation rate3.85.27.8-2.8-1.4-2.5
Reaction time premature initiations0.81.52.6-1.3-0.6-1.6
Std. dev. reaction times0.51.02.11.0-0.11.4
Reaction time trials completed0.81.52.41.60.71.2
Reaction time trials AUC0.71.31.91.40.71.3
Run reversals in cocaine runway, females3.43.47.0-1.7-0.7-2.6
Run reversals in cocaine runway, males1.11.12.10.41.5-1.0
Latency to leave start box in cocaine runway0.30.40.6-0.80.60.5
Latency to leave start box in cocaine runway, F0.70.81.6-1.30.8-0.4
Latency to leave start box in cocaine runway, M0.50.51.30.1-0.31.2
Std. dev. time between licks in bursts0.60.81.5-0.8-1.20.6
Total sessions with >9 infusions0.10.20.3-0.50.30.3
Short access day 1 total inactive lever presses0.50.61.3-0.40.71.1
Short access day 10 total inactive lever presses0.30.61.6-0.4-0.41.3
Short access day 1 total infusions0.20.20.40.10.60.5
Short access day 10 total infusions0.30.31.0-0.11.0-0.0
Short access total infusions0.30.40.60.50.80.7
Short access day 1 locomotion1.11.33.9-2.0-0.2-0.1
Short access day 10 total locomotion0.10.20.5-0.70.1-0.1
Short access total locomotion0.40.51.3-1.10.1-0.3
One hour access (0.3 mA shock)0.20.30.50.70.30.4
Compulsive drug intake0.70.91.70.80.61.3
One hour access (shock baseline)0.40.51.21.10.7-0.1
Social response proportion1.82.04.00.92.0-1.1
Social responses0.20.20.4-0.5-0.10.6
Social time0.70.91.80.40.9-1.3
Soleus weight0.72.12.91.31.7-1.3
Bone: stiffness3.04.97.72.52.80.8
Tibialis anterior weight0.30.91.61.30.50.9
Time to tail flick, vehicle, before self-admin0.20.20.5-0.7-0.2-0.3
Time to tail flick, vehicle, after self-admin0.91.12.30.70.8-1.5
Time to tail flick, test, before self-admin0.50.51.1-0.6-0.21.0
Time to tail flick, test, after self-admin0.40.40.9-0.60.10.9
Delta time to tail flick, vehicle, before/after SA0.80.81.21.11.0-0.1
Delta time to tail flick, test, before/after SA0.10.10.20.20.1-0.4
Tibia length0.10.30.8-0.00.1-0.9
Ambulatory time before self-admin1.01.52.2-1.5-1.1-1.0
Ambulatory time after self-admin0.91.11.8-1.3-1.2-0.1
Bone: tissue strength1.01.01.5-1.2-1.20.1
Total heroin consumption2.12.52.61.61.51.6
Bone: trabecular number1.62.66.92.60.60.9
Bone: trabecular spacing2.73.66.4-2.5-1.6-1.4
Bone: trabecular thickness1.31.73.31.81.10.7
Bone: trabecular tissue density0.50.71.5-0.7-1.2-0.4
Water consumed over 24 hours0.00.00.00.1-0.1-0.1
Number of responses in last shaping day0.80.91.4-1.2-0.8-0.8