Kcnj2

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Adipose mRNA stability Kcnj2 0.03 0.02 9.1e-04 0.01 0.01 0 0.01 7.1e-03 1.8e-02 9.7e-02 2.5e-02
2 Adipose gene expression Kcnj2 0.07 0.04 4.2e-07 0 0.05 0.04 0.04 1.1e-01 2.9e-06 2.0e-05 2.1e-05
3 BLA gene expression Kcnj2 0.15 0.07 1.3e-05 0.01 0.06 0.04 0.06 5.1e-02 3.6e-04 4.0e-03 2.9e-04

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
Bone: apparent density1.22.15.3-2.30.10.9
Area under the delay curve0.91.02.4-0.70.2-1.5
BMI with tail1.24.07.62.80.2-2.0
BMI without tail1.63.28.11.2-0.1-2.9
Body weight0.41.83.11.80.6-1.5
Weight adjusted by age0.40.51.01.00.70.0
Bone surface5.910.423.8-4.92.60.9
Bone volume4.27.116.8-4.12.10.4
Breakpoint value in progressive ratio session1.11.22.1-0.81.01.4
Number of licking bursts0.60.71.8-0.41.3-0.2
Context. condit. distance diff. score0.40.51.01.0-0.50.5
Locomotion velocity, session 10.70.71.8-0.10.71.3
Locomotion distance, session 10.60.71.51.2-0.10.9
Locomotion velocity, session 20.70.81.30.3-1.01.2
Locomotion distance, session 20.40.51.50.20.01.2
Locomotion velocity, session 30.20.30.40.60.60.3
Locomotion distance, session 30.40.50.9-0.71.00.0
Stereotopy head waving bouts, day 30.30.41.00.20.51.0
Stereotopy head waving duration, day 30.50.61.6-0.00.31.3
Locomotion velocity, session 71.01.11.7-1.30.51.2
Locomotion distance, session 70.91.11.4-1.21.10.9
Stereotopy head waving bouts, day 71.51.74.50.8-0.32.1
Stereotopy head waving duration, day 71.51.95.50.3-0.12.3
Locomotion velocity, session 80.80.92.1-0.80.31.4
Locomotion distance, session 80.40.61.50.6-0.21.2
Degree of sensitization distance0.20.20.5-0.3-0.10.7
Degree of sensitization stereotypy1.01.11.91.0-0.61.4
Conditioned locomotion0.91.02.90.20.4-1.7
Cocaine response after cond. corrected0.70.81.9-0.30.5-1.4
Cocaine response after cond. not corrected0.40.50.8-0.50.7-0.9
Cocaine response before conditioning0.40.51.40.00.31.2
Saline control response1.01.32.70.9-0.5-1.6
Bone: connectivity density1.93.16.7-2.60.81.4
Bone: cortical apparent density5.36.913.83.7-1.81.9
Bone: cortical area0.40.61.60.01.30.6
Bone: cortical porosity0.90.92.0-1.4-0.10.9
Bone: cortical porosity0.70.72.2-1.50.00.2
Bone: cortical thickness7.211.925.05.0-3.20.4
Bone: cortical thickness1.31.54.12.0-0.2-0.5
Bone: cortical tissue density5.16.813.33.6-1.81.9
Condit. Reinf. active minus inactive responses0.20.20.60.70.10.3
Condit. Reinf. active-inactive response ratio0.30.41.1-0.00.21.0
Condit. Reinf. active responses0.30.41.21.10.00.2
Condit. Reinf. inactive responses0.30.41.11.00.3-0.1
Incentive salience index mean0.30.40.60.7-0.10.8
Condit. Reinf. lever presses0.50.71.11.1-0.90.5
Condit. Reinf. active minus inactive responses0.10.20.3-0.30.30.5
Condit. Reinf. active-inactive response ratio0.30.30.60.3-0.40.8
Condit. Reinf. active responses0.30.40.4-0.60.60.6
Condit. Reinf. inactive responses0.40.40.5-0.50.70.7
Condit. Reinf. lever presses0.50.71.6-0.2-0.71.3
Condit. Reinf. lever reinforcers received0.30.40.5-0.70.70.5
Conditioned reinforcement - actives1.41.43.4-1.80.70.6
Conditioned reinforcement - inactives0.60.71.3-0.7-0.51.1
Conditioned locomotion0.10.20.2-0.40.3-0.5
Patch foraging indifference point 0 sec1.32.03.61.6-1.90.2
Patch foraging indifference point AUC0.30.40.50.7-0.6-0.6
Delay disc. indifference point, 0s delay0.20.20.40.6-0.30.5
Delay disc. indifference point, 16s delay0.60.61.1-1.00.4-0.7
Delay disc. indifference point, 2s delay0.30.30.5-0.70.1-0.7
Delay disc. indifference point, 24s delay1.11.11.6-1.30.3-1.2
Delay disc. indifference point, 4s delay1.01.03.00.20.3-1.7
Delay disc. indifference point, 8s delay1.21.23.5-0.0-0.2-1.9
Indifference point function ln k0.20.30.90.1-0.01.0
Indifference point function log k0.20.30.90.1-0.01.0
Patch foraging total patch changes 0 sec1.11.72.91.5-1.7-0.1
Patch foraging total patch changes 12 sec1.11.42.21.5-1.3-0.6
Patch foraging total patch changes 18 sec2.93.75.82.2-2.4-0.7
Patch foraging total patch changes 24 sec0.30.40.70.8-0.60.1
Patch foraging total patch changes 6 sec2.63.96.32.2-2.5-0.7
Patch foraging time to switch 0 sec0.30.51.1-1.00.7-0.0
Patch foraging water rate 0 sec1.52.45.02.2-1.3-0.7
Patch foraging water rate 12 sec0.50.72.11.4-0.10.3
Patch foraging water rate 18 sec0.91.32.01.4-0.41.2
Patch foraging water rate 24 sec0.60.81.70.7-1.3-0.6
Patch foraging water rate 6 sec0.81.22.41.5-0.60.9
Seeking ratio, delayed vs. immediate footshock1.21.41.51.2-1.1-1.2
Distance traveled before self-admin0.60.60.80.7-0.7-0.9
Distance traveled after self-admin0.30.30.50.5-0.7-0.5
Extensor digitorum longus weight0.10.30.6-0.10.4-0.8
Bone: elastic displacement2.62.96.72.6-1.40.1
Bone: elastic work0.50.71.81.3-0.3-0.4
Bone: endosteal estimation14.130.749.5-7.06.5-0.4
Bone: endosteal perimeter13.427.842.6-6.56.30.7
Epididymis fat weight0.51.22.41.6-0.1-1.1
Delta time in closed arm before/after self-admin0.10.10.10.3-0.3-0.1
Delta time in open arm before/after self-admin1.51.53.0-1.20.31.7
Diff in mean of infusions in LGA sessions0.40.40.70.80.3-0.8
Delay discount exponential model param1.11.12.70.8-0.21.7
Extinction: sum of active levers before priming2.42.44.0-1.60.92.0
Active lever presses in extinction session 61.11.11.6-1.30.90.9
Bone: final force1.42.34.2-1.62.10.4
Bone: final moment0.91.52.6-1.31.60.5
Food consumed during 24 hour testing period0.50.71.0-0.0-1.01.0
Glucose0.40.61.5-0.61.2-0.3
Heart weight0.71.12.41.5-0.9-0.1
Delay discount hyperbolic model param1.11.12.80.7-0.21.7
Intermittent access intake day 1-15 change0.70.61.5-0.5-0.4-1.2
Intermittent access intake escalation0.70.71.7-0.3-0.5-1.3
Intermittent access intake escalation 21.01.02.1-0.1-1.0-1.4
Intermitt. access day 1 inactive lever presses1.11.21.91.4-0.61.2
Intermitt. access day 15 inactive lever presses0.20.30.60.8-0.50.2
Intermitt. access escalation Index0.20.10.4-0.1-0.60.0
Intermittent access day 1 total infusions0.70.81.1-1.11.0-0.2
Intermittent access day 15 total infusions0.70.81.3-1.10.5-0.9
Intermittent access terminal intake (last 3 days)0.91.02.3-1.50.6-0.6
Intermittent access total infusions0.60.71.1-1.10.9-0.1
Intermittent access day 1 locomotion0.10.10.10.40.10.3
Intermittent access day 15 total locomotion0.80.91.70.6-0.7-1.3
Intermittent access total locomotion0.20.20.40.7-0.0-0.5
Intermittent access standard deviation1.31.43.6-0.60.4-1.9
Left kidney weight0.00.10.3-0.50.2-0.4
Right kidney weight0.10.30.4-0.60.60.4
Cocaine induced anxiety1.01.12.10.9-0.7-1.4
Post-drug Anxiety0.10.10.10.0-0.4-0.2
Baseline Anxiety1.11.22.1-1.10.51.4
Tail length0.20.61.4-0.6-0.1-1.2
Length with tail0.00.10.2-0.40.1-0.4
Length without tail0.10.30.60.20.60.8
Times rat made contact with spout1.11.31.81.3-1.3-0.6
Lifetime Intake0.70.81.4-1.21.00.1
Liver weight, left1.01.62.9-1.41.70.3
Liver weight, right0.40.71.3-0.71.1-0.6
Locomotor activity0.10.20.50.70.10.4
Locomotor testing distance0.81.33.11.8-0.10.8
Locomotor testing rearing3.85.913.23.6-2.1-0.6
Locomotion in novel chamber0.70.92.6-0.3-0.11.6
Locomotion in novel chamber post-restriction0.40.41.2-0.3-1.1-0.1
Fecal boli incidents, locomotor time 11.01.12.9-1.7-0.0-0.6
Change in fecal boli incidents, locomotor task2.12.02.91.7-1.7-0.5
Time >=10cm from walls, locomotor time 11.01.02.1-1.51.00.1
Bouts of movement, locomotor time 11.11.22.10.9-1.4-0.8
Total resting periods, locomotor time 10.80.91.50.3-1.0-1.2
Rest time, locomotor task time 11.01.12.00.4-1.4-1.1
Distance moved, locomotor task time 11.31.42.50.51.61.2
Vertical activity count, locomotor time 11.81.93.30.61.41.8
Time >=10cm from walls, locomotor time 21.81.93.11.7-1.50.6
Bouts of movement, locomotor time 20.20.20.50.0-0.70.2
Total resting periods, locomotor time 20.30.30.8-0.0-0.9-0.1
Rest time, locomotor task time 21.41.62.9-1.7-0.1-1.4
Distance moved, locomotor task time 21.31.62.81.70.81.1
Vertical activity count, locomotor time 21.21.32.51.20.21.6
Light reinforcement 10.40.71.40.30.7-1.2
Light reinforcement 22.63.56.7-1.72.6-0.9
Bone: marrow area13.930.248.1-6.96.5-0.5
Bone: maximum diameter7.313.419.6-4.34.41.4
Bone: maximum force1.83.24.9-2.12.20.2
Bone: maximum moment1.22.03.2-1.81.70.3
Mean time between licks in bursts0.60.92.2-0.30.51.5
Mean num. licks in bursts0.81.02.20.8-1.5-0.2
Cd content in liver0.10.10.20.5-0.20.4
Co content in liver2.22.63.61.9-1.61.3
Cu content in liver0.50.61.1-1.00.7-0.4
Fe content in liver0.30.30.6-0.2-0.80.6
K content in liver3.13.15.0-2.22.00.4
Mg content in liver1.81.82.4-1.61.41.0
Mn content in liver2.02.35.1-2.31.10.9
Na content in liver1.61.73.5-1.90.90.9
Rb content in liver1.31.64.10.00.9-2.0
Se content in liver1.82.23.8-1.31.0-1.9
Sr content in liver2.11.93.10.5-1.81.5
Zn content in liver1.71.92.8-1.50.81.7
Bone: minimum diameter7.914.725.1-4.35.00.6
Time in familiar zone, hab. session 10.60.51.3-0.1-1.1-0.6
Time in novel zone, hab. session 10.80.81.20.61.10.9
Total zone transitions, hab. session 10.60.81.41.2-0.60.8
Total locomotion distance, hab. session 10.50.71.91.4-0.40.3
Locomotion velocity, hab. session 10.30.51.21.10.10.4
Time in familiar zone, hab. session 20.50.51.20.4-1.1-0.4
Time in novel zone, hab. session 22.22.23.7-1.01.91.3
Total zone transitions, hab. session 20.20.30.50.6-0.70.2
Total locomotion distance, hab. session 20.30.40.80.9-0.50.1
Locomotion velocity, hab. session 20.20.30.70.8-0.4-0.1
Novel to familiar place preference ratio0.20.20.30.50.40.3
Novelty place preference0.30.30.50.40.50.7
Time in novel zone, NPP test0.40.40.90.50.31.0
Total zone transitions, NPP test0.60.81.11.0-1.00.5
Total locomotion distance, NPP test0.91.33.51.9-0.60.1
Locomotion velocity, NPP test1.01.43.51.9-0.5-0.6
Intraocular pressure0.30.40.70.40.60.8
Delta distance traveled before/after self-admin0.30.30.40.5-0.70.6
Delta ambulatory time before/after self-admin0.20.20.6-0.0-0.30.8
Parametrial fat weight1.12.03.7-1.91.2-1.0
Pavlov. Cond. lever latency2.02.65.1-2.31.5-0.5
Pavlov. Cond. magazine entry latency1.01.31.91.4-1.2-0.7
Pavlov. Cond. change in total contacts2.42.64.72.2-1.60.7
Pavlov. Cond. index score1.11.43.11.8-1.1-0.2
Pavlov. Cond. latency score1.31.63.41.9-1.20.1
Pavlov. Cond. lever contacts1.51.83.31.8-1.4-0.1
Pavlov. Cond. magazine entry number1.01.22.2-1.51.10.4
Pavlov. Cond. intertrial magazine entries0.10.10.20.00.40.2
Pavlov. Cond. lever-magazine prob. diff.0.81.02.21.5-0.8-0.4
Pavlov. Cond. response bias1.01.32.51.6-1.0-0.4
Pavlov. Cond. lever latency0.91.32.61.0-0.5-1.6
Pavlov. Cond. magazine entry latency0.30.41.0-1.0-0.3-0.1
Pavlov. Cond. change in total contacts0.40.61.1-1.1-0.10.8
Pavlov. Cond. index score0.50.71.4-1.20.20.8
Pavlov. Cond. latency score0.60.81.5-1.20.50.8
Pavlov. Cond. lever contacts0.81.02.4-0.90.21.5
Pavlov. Cond. magazine entry number0.20.20.40.60.40.5
Pavlov. Cond. intertrial magazine entries2.22.84.9-2.21.80.6
Pavlov. Cond. lever-magazine prob. diff.0.60.71.8-1.30.20.6
Pavlov. Cond. response bias0.50.61.4-1.20.00.7
Time in closed arm before self-admin0.30.40.80.50.1-0.9
Time in closed arm after self-admin0.91.02.21.5-0.6-0.5
Time in open arm before self-admin0.10.10.30.5-0.3-0.2
Time in open arm after self-admin1.11.21.8-1.30.51.3
Bone: periosteal estimation7.916.326.0-4.85.1-0.1
Bone: periosteal perimeter5.38.812.9-3.63.60.8
Bone: post-yield work3.64.98.9-3.02.3-0.7
Progressive ratio test 1 active lever presses0.10.10.30.60.2-0.2
Progressive ratio test 1 breakpoint0.10.10.30.60.30.0
Progressive ratio test 1 inactive lever presses0.10.10.2-0.1-0.20.5
Progressive ratio test 2 active lever presses0.00.00.1-0.20.3-0.0
Progressive ratio test 2 breakpoint0.00.00.00.20.10.2
Progressive ratio test 2 inactive lever presses0.50.61.3-0.60.3-1.2
Incentive Sensitization - Responses0.10.10.3-0.50.10.3
Incentive Sensitization - Breakpoint0.10.10.2-0.4-0.10.2
Sum of active levers in priming session hrs 5-60.30.30.70.8-0.2-0.4
Progressive ratio2.12.45.0-2.21.30.7
Food seeking constrained by brief footshock0.40.50.9-1.0-0.6-0.2
Seeking ratio, punishment vs. effort1.11.31.71.3-1.3-0.8
Retroperitoneal fat weight0.41.43.01.7-1.0-0.3
Reaction time number correct0.91.22.0-1.40.61.1
Reaction time mean minus median0.60.82.0-1.4-0.20.6
Reaction time mean minus median AUC1.92.55.7-2.41.30.5
Reaction time num false alarms1.11.52.5-0.71.6-1.3
Reaction time num false alarms AUC1.42.02.7-1.51.7-1.0
Reaction time trials correct on left0.91.22.0-1.40.61.1
Reaction time trials on left1.01.42.2-1.50.71.2
Reaction time mean0.70.92.5-0.3-0.41.6
Reaction time mean AUC0.91.23.2-0.4-0.41.8
Median of all reaction times0.60.92.40.1-0.51.5
Reaction time omissions1.31.83.6-1.90.61.2
Reaction time false alarm rate0.71.02.0-0.30.9-1.4
Reaction time premature initiation rate3.44.67.12.7-1.5-2.1
Reaction time premature initiations1.01.31.91.3-0.7-1.4
Std. dev. reaction times0.50.71.3-1.10.00.8
Reaction time trials completed1.01.42.2-1.50.71.2
Reaction time trials AUC0.91.31.8-1.30.71.3
Run reversals in cocaine runway, females3.33.24.92.0-0.9-2.2
Run reversals in cocaine runway, males1.11.11.8-0.11.4-1.2
Latency to leave start box in cocaine runway0.60.61.01.00.50.8
Latency to leave start box in cocaine runway, F0.70.71.81.30.6-0.3
Latency to leave start box in cocaine runway, M0.80.81.90.5-0.51.4
Std. dev. time between licks in bursts0.60.71.60.6-1.20.4
Total sessions with >9 infusions0.10.10.20.20.50.2
Short access day 1 total inactive lever presses1.01.22.9-0.30.61.7
Short access day 10 total inactive lever presses0.30.40.60.4-0.60.8
Short access day 1 total infusions0.91.01.3-1.10.90.8
Short access day 10 total infusions0.60.61.5-0.61.2-0.2
Short access total infusions1.01.11.6-1.20.91.0
Short access day 1 locomotion0.60.71.01.0-0.21.0
Short access day 10 total locomotion0.10.10.30.60.2-0.2
Short access total locomotion0.10.10.30.5-0.10.3
One hour access (0.3 mA shock)0.40.51.2-1.10.50.2
Compulsive drug intake0.10.10.2-0.40.20.5
One hour access (shock baseline)1.21.33.3-1.80.7-0.4
Social response proportion1.82.04.2-1.02.0-1.0
Social responses0.30.40.80.5-0.10.9
Social time0.91.22.4-0.31.0-1.5
Soleus weight0.51.62.1-0.91.5-1.3
Bone: stiffness2.74.37.0-2.32.70.7
Tibialis anterior weight0.10.40.8-0.90.60.4
Time to tail flick, vehicle, before self-admin1.01.12.71.6-0.6-0.2
Time to tail flick, vehicle, after self-admin1.31.42.6-1.00.8-1.6
Time to tail flick, test, before self-admin0.40.41.00.20.21.0
Time to tail flick, test, after self-admin0.90.92.2-0.50.61.5
Delta time to tail flick, vehicle, before/after SA2.12.14.7-2.21.3-0.0
Delta time to tail flick, test, before/after SA0.50.51.2-1.10.4-0.2
Tibia length0.20.51.40.20.0-1.2
Ambulatory time before self-admin1.31.42.71.0-0.7-1.7
Ambulatory time after self-admin0.40.40.60.7-0.8-0.1
Bone: tissue strength1.31.22.80.9-1.7-0.1
Total heroin consumption2.42.83.9-1.92.00.9
Bone: trabecular number1.52.36.7-2.60.40.2
Bone: trabecular spacing2.93.88.22.9-1.5-0.9
Bone: trabecular thickness1.31.53.2-1.81.10.4
Bone: trabecular tissue density0.50.71.11.0-0.9-0.4
Water consumed over 24 hours0.10.10.20.4-0.4-0.0
Number of responses in last shaping day1.41.52.91.7-1.2-0.3