Kcne3

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Brain gene expression Kcne3 0.05 0.04 9.7e-05 0.04 0.04 0.04 0.04 5.1e-05 5.0e-05 1.8e-04 1.3e-04
2 NAcc gene expression Kcne3 0.02 0.02 2.3e-03 0.02 0.01 0.01 0.01 5.2e-03 8.4e-03 6.1e-02 1.5e-02
3 Adipose gene expression Kcne3 0.06 0.04 1.2e-06 0.06 0.04 0.05 0.05 1.0e-06 2.4e-05 7.2e-06 4.8e-06
4 PL gene expression Kcne3 0.06 0.04 9.6e-05 0.01 0.03 0.03 0.02 3.2e-02 3.8e-04 5.2e-04 1.4e-03

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density0.10.20.50.2-0.1-0.30.7
Area under the delay curve0.20.20.2-0.40.50.5-0.4
BMI with tail0.10.30.5-0.40.60.4-0.7
BMI without tail1.22.65.9-0.91.41.2-2.4
Body weight1.04.38.9-1.31.91.8-3.0
Weight adjusted by age0.30.41.2-0.10.40.4-1.1
Bone surface0.30.61.01.0-0.7-0.90.1
Bone volume0.20.40.70.8-0.6-0.70.2
Breakpoint value in progressive ratio session0.10.20.50.1-0.3-0.20.7
Number of licking bursts4.95.77.5-2.72.62.6-1.3
Context. condit. distance diff. score3.03.64.62.1-2.1-2.01.2
Locomotion velocity, session 10.30.41.00.3-0.4-0.41.0
Locomotion distance, session 11.21.61.81.3-1.4-1.31.0
Locomotion velocity, session 20.00.00.00.2-0.0-0.1-0.1
Locomotion distance, session 20.50.70.80.9-0.9-0.90.6
Locomotion velocity, session 31.41.71.81.3-1.3-1.31.2
Locomotion distance, session 32.52.83.01.7-1.7-1.71.5
Stereotopy head waving bouts, day 30.81.01.0-1.01.01.0-0.9
Stereotopy head waving duration, day 30.20.20.20.4-0.5-0.50.4
Locomotion velocity, session 70.00.00.1-0.20.00.10.4
Locomotion distance, session 70.10.20.2-0.50.50.4-0.2
Stereotopy head waving bouts, day 72.73.13.92.0-1.9-1.91.1
Stereotopy head waving duration, day 72.53.14.22.0-2.0-1.90.8
Locomotion velocity, session 80.70.91.11.1-1.0-1.00.5
Locomotion distance, session 82.23.34.42.0-2.1-1.91.0
Degree of sensitization distance3.63.64.3-1.71.91.9-2.1
Degree of sensitization stereotypy5.66.18.02.8-2.7-2.71.4
Conditioned locomotion0.10.10.30.1-0.2-0.20.5
Cocaine response after cond. corrected2.62.93.4-1.91.81.8-1.3
Cocaine response after cond. not corrected0.60.60.8-0.90.90.8-0.6
Cocaine response before conditioning3.03.74.22.0-2.0-2.11.5
Saline control response0.50.61.01.0-0.7-0.7-0.6
Bone: connectivity density0.40.61.10.7-0.6-0.71.1
Bone: cortical apparent density2.53.24.0-2.02.01.9-1.2
Bone: cortical area0.10.10.40.20.1-0.0-0.6
Bone: cortical porosity1.92.12.51.5-1.6-1.51.2
Bone: cortical porosity1.71.92.21.4-1.5-1.41.2
Bone: cortical thickness0.00.10.1-0.30.30.30.1
Bone: cortical thickness0.30.30.40.6-0.5-0.60.6
Bone: cortical tissue density2.33.13.8-1.91.91.8-1.1
Condit. Reinf. active minus inactive responses0.20.20.6-0.20.30.3-0.8
Condit. Reinf. active-inactive response ratio0.20.20.90.00.20.2-0.9
Condit. Reinf. active responses0.10.10.3-0.30.30.3-0.5
Condit. Reinf. inactive responses0.00.00.1-0.0-0.0-0.00.2
Incentive salience index mean0.10.10.40.00.20.1-0.7
Condit. Reinf. lever presses0.00.00.00.2-0.0-0.1-0.2
Condit. Reinf. active minus inactive responses1.92.44.32.1-1.5-1.6-0.8
Condit. Reinf. active-inactive response ratio0.80.81.31.2-1.0-1.0-0.0
Condit. Reinf. active responses2.12.95.12.3-1.6-1.6-1.2
Condit. Reinf. inactive responses1.01.21.91.4-0.9-0.9-1.2
Condit. Reinf. lever presses7.19.616.34.0-3.3-3.3-0.1
Condit. Reinf. lever reinforcers received2.73.86.82.6-1.9-1.9-1.0
Conditioned reinforcement - actives3.63.64.52.1-2.0-2.01.3
Conditioned reinforcement - inactives0.20.30.3-0.50.50.5-0.6
Conditioned locomotion4.45.25.92.4-2.4-2.41.8
Patch foraging indifference point 0 sec2.54.06.02.5-2.2-2.20.5
Patch foraging indifference point AUC0.70.81.5-0.60.90.8-1.2
Delay disc. indifference point, 0s delay0.20.20.40.6-0.4-0.5-0.2
Delay disc. indifference point, 16s delay0.00.00.1-0.0-0.0-0.00.3
Delay disc. indifference point, 2s delay0.20.20.80.10.10.1-0.9
Delay disc. indifference point, 24s delay0.40.40.6-0.80.70.70.1
Delay disc. indifference point, 4s delay0.40.41.3-0.00.30.3-1.1
Delay disc. indifference point, 8s delay0.00.00.0-0.00.10.1-0.1
Indifference point function ln k2.94.04.22.0-2.1-2.11.9
Indifference point function log k2.94.04.22.0-2.1-2.11.9
Patch foraging total patch changes 0 sec1.83.04.52.1-1.9-1.90.3
Patch foraging total patch changes 12 sec0.30.31.30.30.0-0.0-1.1
Patch foraging total patch changes 18 sec0.70.91.51.2-0.9-1.0-0.4
Patch foraging total patch changes 24 sec0.20.31.10.3-0.1-0.1-1.0
Patch foraging total patch changes 6 sec0.40.60.90.9-0.8-0.80.3
Patch foraging time to switch 0 sec1.42.13.6-1.91.51.60.1
Patch foraging water rate 0 sec2.03.24.82.2-1.9-2.00.6
Patch foraging water rate 12 sec2.13.24.22.1-1.9-2.01.0
Patch foraging water rate 18 sec0.40.61.01.0-0.8-0.8-0.1
Patch foraging water rate 24 sec2.33.23.51.8-1.8-1.91.6
Patch foraging water rate 6 sec1.42.02.41.6-1.5-1.51.0
Seeking ratio, delayed vs. immediate footshock0.20.20.4-0.60.20.40.6
Distance traveled before self-admin1.21.31.7-1.31.21.3-0.5
Distance traveled after self-admin0.70.82.10.4-0.6-0.71.4
Extensor digitorum longus weight0.62.33.1-1.31.61.5-1.8
Bone: elastic displacement0.50.50.9-1.00.60.60.6
Bone: elastic work0.30.40.9-0.70.40.41.0
Bone: endosteal estimation0.30.62.00.50.0-0.1-1.4
Bone: endosteal perimeter0.30.61.40.8-0.3-0.4-1.2
Epididymis fat weight2.04.65.5-1.92.12.2-2.4
Delta time in closed arm before/after self-admin6.05.86.3-2.32.42.5-2.4
Delta time in open arm before/after self-admin2.22.13.11.8-1.6-1.60.3
Diff in mean of infusions in LGA sessions2.83.14.4-2.11.82.0-0.8
Delay discount exponential model param0.20.20.30.4-0.5-0.50.4
Extinction: sum of active levers before priming0.10.10.1-0.40.20.3-0.3
Active lever presses in extinction session 65.85.76.42.4-2.5-2.42.2
Bone: final force0.00.00.0-0.20.20.2-0.1
Bone: final moment0.00.00.0-0.00.00.0-0.2
Food consumed during 24 hour testing period3.74.55.92.4-2.3-2.31.2
Glucose0.10.20.20.4-0.3-0.40.5
Heart weight0.91.21.91.4-1.2-1.20.4
Delay discount hyperbolic model param0.20.30.40.4-0.5-0.50.6
Intermittent access intake day 1-15 change0.50.50.80.9-0.7-0.70.4
Intermittent access intake escalation0.70.61.01.0-0.8-0.80.5
Intermittent access intake escalation 20.10.10.10.10.20.2-0.4
Intermitt. access day 1 inactive lever presses0.50.60.6-0.80.80.8-0.7
Intermitt. access day 15 inactive lever presses0.50.50.60.7-0.8-0.80.6
Intermitt. access escalation Index0.20.20.30.6-0.4-0.40.2
Intermittent access day 1 total infusions0.70.81.21.1-1.1-1.10.0
Intermittent access day 15 total infusions1.61.72.41.6-1.4-1.40.6
Intermittent access terminal intake (last 3 days)1.01.01.61.3-1.1-1.10.3
Intermittent access total infusions0.70.81.11.1-1.0-1.00.1
Intermittent access day 1 locomotion0.40.40.60.6-0.7-0.70.5
Intermittent access day 15 total locomotion1.51.62.11.4-1.4-1.40.8
Intermittent access total locomotion0.70.71.01.0-1.0-1.00.3
Intermittent access standard deviation0.10.10.2-0.00.20.2-0.4
Left kidney weight0.41.24.2-0.10.60.6-2.1
Right kidney weight0.30.92.9-0.20.60.7-1.7
Cocaine induced anxiety1.11.32.1-1.41.31.3-0.2
Post-drug Anxiety1.21.41.7-1.31.31.3-0.7
Baseline Anxiety0.30.30.50.7-0.5-0.5-0.3
Tail length1.75.215.5-0.71.61.5-3.9
Length with tail1.45.212.7-1.21.81.8-3.6
Length without tail0.10.20.3-0.50.40.5-0.0
Times rat made contact with spout1.21.41.5-1.11.21.2-1.2
Lifetime Intake1.01.11.61.2-1.2-1.20.2
Liver weight, left2.23.53.9-1.71.81.9-2.0
Liver weight, right4.87.98.4-2.72.82.8-2.9
Locomotor activity0.40.71.11.0-0.8-0.90.5
Locomotor testing distance0.71.12.01.4-1.1-1.1-0.1
Locomotor testing rearing0.30.41.50.00.30.3-1.2
Locomotion in novel chamber1.82.22.41.4-1.5-1.41.5
Locomotion in novel chamber post-restriction3.03.64.42.0-2.1-2.11.3
Fecal boli incidents, locomotor time 11.71.82.01.4-1.4-1.41.2
Change in fecal boli incidents, locomotor task1.01.01.3-1.11.11.1-0.5
Time >=10cm from walls, locomotor time 12.42.42.91.7-1.7-1.71.0
Bouts of movement, locomotor time 10.30.30.40.6-0.6-0.60.4
Total resting periods, locomotor time 10.70.80.90.8-0.9-0.90.9
Rest time, locomotor task time 10.30.30.70.3-0.5-0.50.8
Distance moved, locomotor task time 10.80.81.6-0.50.80.8-1.3
Vertical activity count, locomotor time 10.20.20.8-0.10.30.3-0.9
Time >=10cm from walls, locomotor time 20.70.71.21.1-1.0-1.00.0
Bouts of movement, locomotor time 20.50.51.3-0.30.60.6-1.1
Total resting periods, locomotor time 20.60.71.2-0.60.80.8-1.1
Rest time, locomotor task time 21.31.42.6-1.61.31.3-0.0
Distance moved, locomotor task time 20.91.12.11.4-1.0-1.0-0.4
Vertical activity count, locomotor time 20.20.30.80.5-0.2-0.2-0.9
Light reinforcement 11.52.74.2-2.11.81.7-0.6
Light reinforcement 20.10.10.4-0.1-0.1-0.10.7
Bone: marrow area0.30.62.20.30.20.0-1.5
Bone: maximum diameter0.30.61.01.0-0.6-0.7-0.8
Bone: maximum force0.00.00.00.1-0.0-0.0-0.1
Bone: maximum moment0.00.00.10.3-0.2-0.2-0.1
Mean time between licks in bursts0.91.34.00.9-0.3-0.4-2.0
Mean num. licks in bursts3.44.15.72.4-2.2-2.20.9
Cd content in liver1.31.41.7-1.21.31.1-1.1
Co content in liver0.30.30.80.5-0.3-0.3-0.9
Cu content in liver0.30.31.30.10.20.1-1.1
Fe content in liver0.10.10.1-0.30.30.3-0.3
K content in liver0.60.60.7-0.80.80.8-0.8
Mg content in liver0.00.00.00.2-0.1-0.1-0.2
Mn content in liver0.30.31.2-0.40.10.21.1
Na content in liver0.30.30.50.6-0.7-0.60.4
Rb content in liver0.20.30.50.7-0.5-0.5-0.2
Se content in liver1.31.62.7-1.61.31.40.1
Sr content in liver0.40.30.60.4-0.6-0.50.8
Zn content in liver2.32.64.22.0-1.7-1.70.2
Bone: minimum diameter0.91.74.3-0.71.11.0-2.1
Time in familiar zone, hab. session 10.20.20.4-0.30.40.4-0.6
Time in novel zone, hab. session 10.20.20.3-0.50.40.5-0.1
Total zone transitions, hab. session 10.50.71.20.6-0.8-0.71.1
Total locomotion distance, hab. session 12.23.13.3-1.71.81.8-1.8
Locomotion velocity, hab. session 11.31.81.9-1.31.31.4-1.4
Time in familiar zone, hab. session 20.50.50.90.9-0.8-0.7-0.2
Time in novel zone, hab. session 20.10.10.2-0.20.20.10.4
Total zone transitions, hab. session 22.12.73.21.7-1.8-1.71.2
Total locomotion distance, hab. session 21.01.32.6-0.81.01.0-1.6
Locomotion velocity, hab. session 21.52.03.4-1.11.21.3-1.8
Novel to familiar place preference ratio0.10.10.10.3-0.3-0.30.2
Novelty place preference0.10.10.10.3-0.3-0.30.2
Time in novel zone, NPP test0.20.20.30.5-0.5-0.50.3
Total zone transitions, NPP test0.60.91.00.9-1.0-0.90.9
Total locomotion distance, NPP test1.52.02.4-1.31.41.4-1.5
Locomotion velocity, NPP test1.82.62.8-1.61.61.7-1.6
Intraocular pressure0.71.01.20.9-1.0-1.01.1
Delta distance traveled before/after self-admin2.62.83.51.7-1.8-1.91.3
Delta ambulatory time before/after self-admin3.33.74.51.9-2.0-2.11.7
Parametrial fat weight1.93.83.9-2.02.02.0-1.8
Pavlov. Cond. lever latency0.50.61.1-1.10.80.90.0
Pavlov. Cond. magazine entry latency1.11.42.41.6-1.3-1.3-0.2
Pavlov. Cond. change in total contacts0.50.60.91.0-0.8-0.8-0.2
Pavlov. Cond. index score1.01.32.31.5-1.2-1.2-0.3
Pavlov. Cond. latency score1.01.32.31.5-1.2-1.2-0.2
Pavlov. Cond. lever contacts0.30.40.60.8-0.5-0.6-0.4
Pavlov. Cond. magazine entry number1.62.03.2-1.81.51.5-0.1
Pavlov. Cond. intertrial magazine entries0.30.40.7-0.90.60.70.2
Pavlov. Cond. lever-magazine prob. diff.0.91.11.81.4-1.1-1.1-0.2
Pavlov. Cond. response bias0.30.40.70.8-0.6-0.6-0.3
Pavlov. Cond. lever latency8.110.918.1-4.23.63.6-0.2
Pavlov. Cond. magazine entry latency3.23.75.22.3-2.1-2.10.8
Pavlov. Cond. change in total contacts7.410.116.14.0-3.5-3.50.6
Pavlov. Cond. index score7.09.014.43.8-3.2-3.30.4
Pavlov. Cond. latency score6.58.112.93.6-3.1-3.10.5
Pavlov. Cond. lever contacts8.511.619.14.4-3.7-3.70.3
Pavlov. Cond. magazine entry number5.56.79.7-3.12.82.8-1.1
Pavlov. Cond. intertrial magazine entries1.11.52.6-0.91.11.1-1.6
Pavlov. Cond. lever-magazine prob. diff.6.27.812.83.6-3.0-3.10.3
Pavlov. Cond. response bias9.312.620.54.5-3.9-3.90.5
Time in closed arm before self-admin6.16.97.42.6-2.7-2.72.6
Time in closed arm after self-admin0.20.20.9-0.2-0.1-0.00.9
Time in open arm before self-admin4.95.36.6-2.62.52.5-1.3
Time in open arm after self-admin0.70.81.9-0.50.70.7-1.4
Bone: periosteal estimation0.20.41.50.50.0-0.2-1.2
Bone: periosteal perimeter0.20.40.70.7-0.3-0.4-0.9
Bone: post-yield work0.10.10.20.4-0.4-0.40.1
Progressive ratio test 1 active lever presses0.00.00.0-0.20.10.10.0
Progressive ratio test 1 breakpoint0.10.10.1-0.30.20.2-0.2
Progressive ratio test 1 inactive lever presses0.20.20.30.5-0.6-0.6-0.2
Progressive ratio test 2 active lever presses0.20.20.50.7-0.5-0.5-0.3
Progressive ratio test 2 breakpoint0.20.20.40.7-0.5-0.5-0.4
Progressive ratio test 2 inactive lever presses1.11.31.61.2-1.3-1.30.6
Incentive Sensitization - Responses0.40.40.91.0-0.6-0.6-0.4
Incentive Sensitization - Breakpoint0.50.51.01.0-0.7-0.7-0.2
Sum of active levers in priming session hrs 5-60.10.10.20.0-0.1-0.10.5
Progressive ratio0.30.30.40.4-0.6-0.50.6
Food seeking constrained by brief footshock0.20.31.00.20.20.1-1.0
Seeking ratio, punishment vs. effort0.60.82.2-0.30.70.5-1.5
Retroperitoneal fat weight8.327.329.2-5.15.35.4-5.1
Reaction time number correct1.21.73.11.0-1.1-1.21.8
Reaction time mean minus median0.10.20.30.5-0.4-0.3-0.5
Reaction time mean minus median AUC0.70.91.31.2-1.1-1.00.3
Reaction time num false alarms2.23.03.8-2.01.91.8-1.1
Reaction time num false alarms AUC0.91.21.7-1.31.21.2-0.6
Reaction time trials correct on left1.21.73.11.0-1.1-1.21.8
Reaction time trials on left1.21.73.11.0-1.1-1.21.8
Reaction time mean1.11.51.7-1.31.31.3-1.0
Reaction time mean AUC1.01.31.8-1.31.21.2-0.7
Median of all reaction times1.31.82.4-1.51.41.4-0.8
Reaction time omissions0.50.70.7-0.90.90.8-0.7
Reaction time false alarm rate2.02.93.3-1.81.81.8-1.4
Reaction time premature initiation rate0.81.13.8-0.10.40.6-1.9
Reaction time premature initiations0.20.30.40.6-0.4-0.3-0.7
Std. dev. reaction times0.60.92.1-0.50.80.8-1.4
Reaction time trials completed1.21.73.11.0-1.1-1.21.8
Reaction time trials AUC0.91.22.30.9-0.9-1.01.5
Run reversals in cocaine runway, females5.95.78.3-2.02.32.2-2.9
Run reversals in cocaine runway, males0.00.00.0-0.1-0.0-0.00.2
Latency to leave start box in cocaine runway3.74.04.9-2.22.22.1-1.4
Latency to leave start box in cocaine runway, F4.65.15.7-2.32.42.3-2.0
Latency to leave start box in cocaine runway, M0.10.10.3-0.2-0.0-0.00.6
Std. dev. time between licks in bursts1.01.23.9-0.30.70.6-2.0
Total sessions with >9 infusions2.93.24.02.0-2.0-2.00.9
Short access day 1 total inactive lever presses0.00.00.0-0.1-0.1-0.10.2
Short access day 10 total inactive lever presses0.00.00.1-0.10.10.10.3
Short access day 1 total infusions1.21.32.11.4-1.3-1.30.0
Short access day 10 total infusions0.40.40.70.8-0.7-0.7-0.4
Short access total infusions0.50.60.80.9-0.9-0.9-0.2
Short access day 1 locomotion3.33.64.21.9-2.1-2.11.4
Short access day 10 total locomotion0.00.00.10.3-0.1-0.1-0.2
Short access total locomotion0.10.20.20.4-0.4-0.40.2
One hour access (0.3 mA shock)1.01.22.01.4-1.2-1.20.2
Compulsive drug intake0.40.40.90.4-0.5-0.50.9
One hour access (shock baseline)0.50.61.11.0-0.8-0.8-0.2
Social response proportion0.90.91.1-0.91.01.0-0.9
Social responses1.72.22.8-1.31.41.5-1.7
Social time0.81.01.8-1.41.01.00.4
Soleus weight1.64.77.4-1.72.12.1-2.7
Bone: stiffness0.61.01.1-1.01.01.0-1.0
Tibialis anterior weight0.10.41.2-0.30.50.5-1.1
Time to tail flick, vehicle, before self-admin0.10.10.10.1-0.2-0.20.4
Time to tail flick, vehicle, after self-admin3.33.64.72.0-2.2-2.11.1
Time to tail flick, test, before self-admin0.10.10.40.10.00.1-0.6
Time to tail flick, test, after self-admin0.70.71.9-0.40.60.6-1.4
Delta time to tail flick, vehicle, before/after SA1.91.92.71.5-1.6-1.60.6
Delta time to tail flick, test, before/after SA0.30.30.4-0.60.60.6-0.4
Tibia length2.46.88.12.8-2.7-2.82.0
Ambulatory time before self-admin0.70.81.2-1.10.91.0-0.1
Ambulatory time after self-admin1.61.83.70.9-1.2-1.21.9
Bone: tissue strength1.11.12.50.6-0.9-0.81.6
Total heroin consumption0.60.70.80.9-0.9-0.90.7
Bone: trabecular number0.20.30.8-0.40.30.20.9
Bone: trabecular spacing0.60.81.11.0-1.1-1.00.3
Bone: trabecular thickness0.30.40.6-0.60.80.6-0.4
Bone: trabecular tissue density3.65.05.5-2.22.32.3-2.1
Water consumed over 24 hours0.10.20.3-0.50.40.40.3
Number of responses in last shaping day0.10.10.40.00.10.1-0.7