Jup

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 LHb mRNA stability Jup 0.1 0.06 7.3e-03 -0.01 0.04 0 -0.01 4.8e-01 5.2e-02 3.1e-01 4.9e-01
2 Adipose gene expression Jup 0.04 0.02 2.6e-06 0.02 0.04 0.03 0.03 5.8e-03 2.0e-05 4.1e-04 4.9e-04
3 Brain gene expression Jup 0.07 0.04 8.5e-07 0.06 0.06 0.06 0.06 2.7e-06 1.9e-06 1.3e-06 2.0e-06
4 Liver gene expression Jup 0.04 0.03 9.0e-04 0.02 0 0.01 0.01 2.8e-03 1.1e-01 1.5e-02 1.3e-02

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density0.50.91.0-1.01.00.8-0.9
Area under the delay curve0.30.30.50.3-0.7-0.50.6
BMI with tail0.41.11.41.2-0.9-1.01.1
BMI without tail2.44.96.81.7-1.9-2.52.6
Body weight0.20.72.01.4-0.80.20.1
Weight adjusted by age1.82.03.31.3-1.5-0.91.8
Bone surface0.40.71.6-0.00.41.0-1.2
Bone volume0.61.02.1-0.20.81.1-1.4
Breakpoint value in progressive ratio session1.01.14.0-0.4-0.1-0.52.0
Number of licking bursts0.50.51.0-1.01.00.3-0.3
Context. condit. distance diff. score2.12.54.41.3-1.9-2.10.6
Locomotion velocity, session 10.10.10.20.10.10.4-0.5
Locomotion distance, session 10.60.71.31.1-1.0-0.70.3
Locomotion velocity, session 20.10.10.3-0.20.2-0.2-0.5
Locomotion distance, session 20.00.00.00.1-0.1-0.1-0.1
Locomotion velocity, session 30.60.71.40.5-0.9-1.20.6
Locomotion distance, session 30.80.81.20.9-1.1-0.90.7
Stereotopy head waving bouts, day 31.61.92.4-1.51.31.3-1.3
Stereotopy head waving duration, day 30.50.61.2-0.50.60.8-1.1
Locomotion velocity, session 70.10.20.30.6-0.1-0.2-0.4
Locomotion distance, session 71.21.52.91.7-1.4-1.10.0
Stereotopy head waving bouts, day 71.31.42.6-1.61.40.7-0.9
Stereotopy head waving duration, day 71.82.23.9-2.01.71.2-0.9
Locomotion velocity, session 81.11.32.01.4-1.4-1.10.6
Locomotion distance, session 80.71.01.90.9-1.1-1.4-0.1
Degree of sensitization distance0.40.40.80.9-0.5-0.1-0.8
Degree of sensitization stereotypy0.91.02.1-1.41.20.4-0.6
Conditioned locomotion0.10.10.4-0.60.3-0.2-0.1
Cocaine response after cond. corrected0.20.20.4-0.60.4-0.10.6
Cocaine response after cond. not corrected0.20.30.5-0.70.60.20.5
Cocaine response before conditioning0.10.20.6-0.10.20.7-0.3
Saline control response0.20.20.50.3-0.40.50.7
Bone: connectivity density0.81.21.4-1.21.11.1-1.0
Bone: cortical apparent density3.03.95.3-2.22.32.0-1.3
Bone: cortical area1.11.72.8-0.71.01.6-1.7
Bone: cortical porosity0.50.60.80.8-0.8-0.90.5
Bone: cortical porosity0.50.50.70.7-0.8-0.80.5
Bone: cortical thickness1.62.63.2-1.81.71.5-1.6
Bone: cortical thickness1.92.24.3-2.11.50.9-1.3
Bone: cortical tissue density2.93.85.2-2.22.31.9-1.3
Condit. Reinf. active minus inactive responses0.10.10.3-0.50.10.0-0.3
Condit. Reinf. active-inactive response ratio0.10.10.5-0.70.10.1-0.2
Condit. Reinf. active responses0.10.10.3-0.50.2-0.0-0.2
Condit. Reinf. inactive responses0.00.00.0-0.10.20.2-0.1
Incentive salience index mean0.10.10.5-0.70.2-0.10.0
Condit. Reinf. lever presses0.20.30.9-0.1-0.2-0.30.9
Condit. Reinf. active minus inactive responses0.40.50.8-0.80.90.3-0.7
Condit. Reinf. active-inactive response ratio0.00.00.00.00.0-0.10.2
Condit. Reinf. active responses0.81.11.7-1.11.30.7-1.1
Condit. Reinf. inactive responses1.01.21.8-1.21.30.9-1.0
Condit. Reinf. lever presses0.10.20.60.1-0.3-0.80.2
Condit. Reinf. lever reinforcers received0.71.01.3-1.11.20.5-1.0
Conditioned reinforcement - actives0.40.40.60.5-0.6-0.70.8
Conditioned reinforcement - inactives1.61.84.7-0.81.22.2-0.7
Conditioned locomotion2.53.04.11.5-1.6-1.82.0
Patch foraging indifference point 0 sec0.00.10.1-0.30.2-0.1-0.3
Patch foraging indifference point AUC0.40.40.7-0.70.70.8-0.2
Delay disc. indifference point, 0s delay0.00.00.00.0-0.10.10.1
Delay disc. indifference point, 16s delay0.40.40.6-0.4-0.5-0.70.8
Delay disc. indifference point, 2s delay0.10.10.4-0.20.30.7-0.2
Delay disc. indifference point, 24s delay0.50.50.80.7-0.9-0.80.3
Delay disc. indifference point, 4s delay0.10.10.3-0.3-0.00.5-0.4
Delay disc. indifference point, 8s delay0.50.50.70.8-0.8-0.60.7
Indifference point function ln k0.20.30.8-0.20.30.4-0.9
Indifference point function log k0.20.30.8-0.20.30.4-0.9
Patch foraging total patch changes 0 sec0.00.00.0-0.20.2-0.1-0.2
Patch foraging total patch changes 12 sec1.52.02.8-1.71.51.4-0.9
Patch foraging total patch changes 18 sec0.10.10.1-0.30.2-0.20.3
Patch foraging total patch changes 24 sec0.20.20.5-0.70.40.1-0.3
Patch foraging total patch changes 6 sec0.10.10.2-0.1-0.1-0.40.3
Patch foraging time to switch 0 sec0.60.92.40.6-0.9-1.60.2
Patch foraging water rate 0 sec0.10.10.40.2-0.0-0.20.6
Patch foraging water rate 12 sec0.20.30.5-0.40.60.7-0.3
Patch foraging water rate 18 sec2.12.93.7-1.51.61.8-1.9
Patch foraging water rate 24 sec0.20.20.50.2-0.3-0.60.7
Patch foraging water rate 6 sec1.01.42.3-1.51.40.9-0.8
Seeking ratio, delayed vs. immediate footshock0.20.20.60.1-0.4-0.8-0.3
Distance traveled before self-admin1.41.52.21.5-1.5-1.10.7
Distance traveled after self-admin0.60.71.20.9-0.8-1.10.3
Extensor digitorum longus weight5.019.729.05.4-4.9-4.03.1
Bone: elastic displacement2.62.93.31.7-1.6-1.81.7
Bone: elastic work0.70.91.30.9-1.0-1.10.7
Bone: endosteal estimation1.12.46.32.5-1.7-0.5-0.3
Bone: endosteal perimeter0.40.82.31.5-0.80.2-0.4
Epididymis fat weight0.40.93.00.5-0.60.11.7
Delta time in closed arm before/after self-admin0.30.30.90.00.10.5-1.0
Delta time in open arm before/after self-admin0.20.20.4-0.10.20.60.6
Diff in mean of infusions in LGA sessions2.02.22.91.1-1.4-1.71.6
Delay discount exponential model param0.30.30.5-0.30.70.5-0.6
Extinction: sum of active levers before priming2.72.63.41.8-1.7-1.31.7
Active lever presses in extinction session 60.30.31.1-0.3-0.10.21.1
Bone: final force2.33.76.5-1.31.72.0-2.5
Bone: final moment2.03.25.9-1.11.51.9-2.4
Food consumed during 24 hour testing period0.00.00.0-0.00.00.00.1
Glucose0.10.20.30.4-0.3-0.50.5
Heart weight0.81.11.61.3-1.2-0.51.0
Delay discount hyperbolic model param0.20.20.5-0.30.70.3-0.5
Intermittent access intake day 1-15 change1.71.72.8-1.41.71.2-0.8
Intermittent access intake escalation2.42.33.6-1.81.91.3-0.9
Intermittent access intake escalation 21.01.01.9-1.21.40.5-0.6
Intermitt. access day 1 inactive lever presses1.41.42.7-1.50.91.70.4
Intermitt. access day 15 inactive lever presses2.83.15.4-1.91.82.3-0.2
Intermitt. access escalation Index0.80.72.80.1-0.10.1-1.7
Intermittent access day 1 total infusions0.20.30.70.4-0.40.9-0.0
Intermittent access day 15 total infusions1.41.63.0-1.11.01.7-1.1
Intermittent access terminal intake (last 3 days)1.51.62.9-1.01.01.7-1.2
Intermittent access total infusions0.60.71.8-0.40.41.3-0.8
Intermittent access day 1 locomotion0.40.40.90.5-0.20.90.5
Intermittent access day 15 total locomotion0.60.71.3-0.20.91.1-0.8
Intermittent access total locomotion0.30.30.8-0.30.50.90.2
Intermittent access standard deviation0.70.71.2-1.11.00.50.7
Left kidney weight0.51.32.0-1.40.90.9-1.3
Right kidney weight0.72.12.5-1.61.21.6-1.4
Cocaine induced anxiety0.91.02.00.5-1.0-0.91.4
Post-drug Anxiety1.51.64.70.4-1.0-0.82.2
Baseline Anxiety0.20.20.60.4-0.3-0.10.8
Tail length1.03.25.01.4-1.8-1.62.2
Length with tail0.10.40.80.9-0.70.40.0
Length without tail1.22.65.4-0.51.02.3-1.9
Times rat made contact with spout0.20.30.70.4-0.2-0.40.8
Lifetime Intake0.80.92.7-0.40.41.6-0.9
Liver weight, left0.00.00.10.2-0.2-0.3-0.1
Liver weight, right1.01.73.5-1.91.31.1-0.5
Locomotor activity0.50.91.3-1.11.10.6-0.8
Locomotor testing distance0.50.91.3-1.21.10.6-0.8
Locomotor testing rearing0.20.30.8-0.90.4-0.3-0.6
Locomotion in novel chamber0.70.91.6-1.00.60.8-1.3
Locomotion in novel chamber post-restriction0.10.10.30.10.30.6-0.1
Fecal boli incidents, locomotor time 10.10.10.10.20.4-0.30.2
Change in fecal boli incidents, locomotor task0.40.41.0-1.00.50.7-0.0
Time >=10cm from walls, locomotor time 11.21.21.4-1.21.21.1-1.0
Bouts of movement, locomotor time 10.10.10.20.4-0.4-0.20.3
Total resting periods, locomotor time 10.40.40.80.9-0.7-0.40.5
Rest time, locomotor task time 10.20.20.50.7-0.3-0.30.3
Distance moved, locomotor task time 10.20.20.3-0.60.10.6-0.2
Vertical activity count, locomotor time 10.10.10.30.4-0.5-0.00.4
Time >=10cm from walls, locomotor time 22.93.13.7-1.91.91.7-1.6
Bouts of movement, locomotor time 21.11.22.10.5-1.1-1.11.5
Total resting periods, locomotor time 21.31.42.10.7-1.3-1.11.4
Rest time, locomotor task time 21.01.22.11.0-0.9-0.81.5
Distance moved, locomotor task time 20.40.51.1-0.20.10.8-1.0
Vertical activity count, locomotor time 20.50.50.80.9-0.9-0.70.1
Light reinforcement 10.40.81.6-1.30.90.8-0.0
Light reinforcement 20.00.00.2-0.40.1-0.00.0
Bone: marrow area1.02.25.92.4-1.7-0.4-0.3
Bone: maximum diameter0.91.62.8-0.50.91.7-1.6
Bone: maximum force0.50.92.40.10.41.0-1.6
Bone: maximum moment0.40.72.10.40.10.8-1.4
Mean time between licks in bursts0.40.62.00.5-0.2-0.41.4
Mean num. licks in bursts1.21.42.11.4-1.4-0.71.1
Cd content in liver2.22.43.61.3-1.6-1.91.3
Co content in liver0.30.30.90.2-0.1-0.5-1.0
Cu content in liver0.40.41.0-0.0-0.3-0.81.0
Fe content in liver0.10.10.2-0.1-0.2-0.40.4
K content in liver5.75.68.3-2.92.71.8-2.0
Mg content in liver6.16.39.0-3.02.72.2-2.0
Mn content in liver12.414.018.8-4.34.13.6-2.7
Na content in liver0.30.30.6-0.40.80.60.3
Rb content in liver2.43.03.6-1.91.81.3-1.8
Se content in liver2.53.16.2-2.51.91.5-0.6
Sr content in liver0.70.61.6-0.60.60.5-1.2
Zn content in liver0.10.20.4-0.40.1-0.60.3
Bone: minimum diameter0.20.40.80.9-0.50.3-0.8
Time in familiar zone, hab. session 11.11.01.4-1.21.11.1-0.5
Time in novel zone, hab. session 10.10.10.10.4-0.2-0.0-0.3
Total zone transitions, hab. session 11.82.63.71.7-1.9-1.80.7
Total locomotion distance, hab. session 10.10.20.30.3-0.6-0.5-0.5
Locomotion velocity, hab. session 10.30.40.80.6-0.9-0.8-0.1
Time in familiar zone, hab. session 21.01.02.3-1.51.00.40.7
Time in novel zone, hab. session 20.90.93.00.50.00.4-1.7
Total zone transitions, hab. session 20.81.01.71.3-1.2-1.0-0.2
Total locomotion distance, hab. session 20.20.30.40.7-0.4-0.5-0.6
Locomotion velocity, hab. session 20.50.60.90.9-0.8-1.0-0.3
Novel to familiar place preference ratio0.30.30.50.5-0.7-0.30.6
Novelty place preference0.10.10.20.3-0.5-0.10.3
Time in novel zone, NPP test0.00.00.1-0.2-0.00.3-0.2
Total zone transitions, NPP test1.62.23.51.9-1.7-1.40.7
Total locomotion distance, NPP test0.30.40.70.8-0.7-0.3-0.6
Locomotion velocity, NPP test1.11.52.51.6-1.5-1.10.4
Intraocular pressure5.17.28.42.6-2.7-2.52.9
Delta distance traveled before/after self-admin0.60.61.0-1.01.00.2-0.7
Delta ambulatory time before/after self-admin0.30.30.6-0.70.80.1-0.5
Parametrial fat weight0.10.10.1-0.30.20.40.4
Pavlov. Cond. lever latency0.91.11.51.2-1.1-1.10.8
Pavlov. Cond. magazine entry latency2.93.75.6-2.42.21.1-1.8
Pavlov. Cond. change in total contacts1.81.94.5-2.11.50.9-0.6
Pavlov. Cond. index score1.51.82.9-1.71.61.0-1.0
Pavlov. Cond. latency score1.62.02.6-1.61.61.2-1.2
Pavlov. Cond. lever contacts0.30.30.5-0.70.60.6-0.3
Pavlov. Cond. magazine entry number3.34.16.32.5-2.3-1.41.6
Pavlov. Cond. intertrial magazine entries1.11.31.51.2-1.2-1.01.2
Pavlov. Cond. lever-magazine prob. diff.1.51.93.3-1.81.61.0-0.9
Pavlov. Cond. response bias1.31.63.3-1.81.40.7-0.8
Pavlov. Cond. lever latency0.20.20.60.3-0.50.00.8
Pavlov. Cond. magazine entry latency0.10.10.20.2-0.0-0.1-0.4
Pavlov. Cond. change in total contacts0.71.02.5-0.71.00.3-1.6
Pavlov. Cond. index score0.20.30.8-0.20.4-0.1-0.9
Pavlov. Cond. latency score0.10.20.5-0.00.3-0.1-0.7
Pavlov. Cond. lever contacts0.10.10.2-0.30.4-0.3-0.4
Pavlov. Cond. magazine entry number0.81.03.00.5-0.8-0.41.7
Pavlov. Cond. intertrial magazine entries0.10.10.4-0.1-0.20.20.7
Pavlov. Cond. lever-magazine prob. diff.0.30.41.2-0.20.4-0.0-1.1
Pavlov. Cond. response bias0.40.61.2-0.70.70.1-1.1
Time in closed arm before self-admin0.30.41.0-1.00.6-0.20.4
Time in closed arm after self-admin0.20.20.4-0.70.1-0.50.5
Time in open arm before self-admin0.10.20.30.4-0.3-0.1-0.6
Time in open arm after self-admin0.20.20.60.4-0.00.8-0.3
Bone: periosteal estimation0.40.71.60.9-0.20.8-1.3
Bone: periosteal perimeter0.20.40.90.6-0.10.6-0.9
Bone: post-yield work0.40.61.20.9-0.60.2-1.1
Progressive ratio test 1 active lever presses0.40.41.4-0.30.31.2-0.4
Progressive ratio test 1 breakpoint0.40.51.5-0.40.31.2-0.2
Progressive ratio test 1 inactive lever presses1.51.73.8-1.21.01.9-0.7
Progressive ratio test 2 active lever presses0.70.71.8-0.50.71.3-0.6
Progressive ratio test 2 breakpoint0.50.61.7-0.30.61.3-0.5
Progressive ratio test 2 inactive lever presses1.21.43.7-0.70.91.9-0.8
Incentive Sensitization - Responses0.10.20.30.30.30.5-0.4
Incentive Sensitization - Breakpoint0.20.20.30.20.40.6-0.5
Sum of active levers in priming session hrs 5-60.40.40.8-0.90.60.3-0.4
Progressive ratio0.10.10.20.3-0.2-0.30.4
Food seeking constrained by brief footshock0.10.20.2-0.50.40.5-0.3
Seeking ratio, punishment vs. effort0.10.10.1-0.40.30.4-0.4
Retroperitoneal fat weight0.00.00.2-0.1-0.1-0.00.4
Reaction time number correct0.10.10.30.6-0.30.10.1
Reaction time mean minus median0.10.20.60.7-0.30.1-0.0
Reaction time mean minus median AUC0.10.20.30.30.10.5-0.6
Reaction time num false alarms0.30.40.8-0.80.90.30.1
Reaction time num false alarms AUC0.30.41.0-0.71.00.2-0.1
Reaction time trials correct on left0.10.10.30.6-0.30.10.1
Reaction time trials on left0.10.10.30.5-0.20.10.1
Reaction time mean1.62.32.7-1.61.61.3-1.6
Reaction time mean AUC1.01.41.7-1.31.21.0-1.3
Median of all reaction times2.93.95.0-2.22.11.6-2.0
Reaction time omissions1.21.72.6-1.61.60.8-0.9
Reaction time false alarm rate0.30.40.8-0.80.90.10.0
Reaction time premature initiation rate0.20.20.5-0.70.00.20.5
Reaction time premature initiations0.10.10.4-0.2-0.20.20.6
Std. dev. reaction times0.20.20.4-0.30.60.5-0.4
Reaction time trials completed0.10.10.30.5-0.20.10.1
Reaction time trials AUC0.00.10.20.5-0.20.20.0
Run reversals in cocaine runway, females0.30.30.80.3-0.9-0.00.6
Run reversals in cocaine runway, males0.10.10.20.2-0.20.2-0.5
Latency to leave start box in cocaine runway0.80.81.90.5-0.7-0.81.4
Latency to leave start box in cocaine runway, F2.42.65.31.1-1.5-1.32.3
Latency to leave start box in cocaine runway, M0.40.40.6-0.80.70.2-0.7
Std. dev. time between licks in bursts0.30.41.30.2-0.2-0.41.1
Total sessions with >9 infusions0.30.30.70.2-0.6-0.10.8
Short access day 1 total inactive lever presses1.82.05.2-0.60.82.3-1.4
Short access day 10 total inactive lever presses0.20.30.50.4-0.60.10.7
Short access day 1 total infusions1.92.04.5-1.00.82.1-1.5
Short access day 10 total infusions0.30.41.00.5-0.41.00.3
Short access total infusions1.01.13.1-0.60.41.8-0.8
Short access day 1 locomotion0.20.20.4-0.60.20.60.2
Short access day 10 total locomotion0.40.40.90.00.30.90.8
Short access total locomotion0.20.20.60.1-0.00.80.4
One hour access (0.3 mA shock)0.20.30.80.10.00.9-0.6
Compulsive drug intake0.40.40.70.8-0.7-0.30.3
One hour access (shock baseline)0.10.10.3-0.10.10.5-0.5
Social response proportion2.02.13.20.8-1.4-1.81.7
Social responses0.30.40.8-0.1-0.2-0.70.9
Social time0.40.51.01.0-0.60.30.8
Soleus weight0.20.50.80.9-0.5-0.80.6
Bone: stiffness1.11.72.9-0.80.91.6-1.7
Tibialis anterior weight0.93.14.52.1-2.0-1.51.3
Time to tail flick, vehicle, before self-admin0.20.20.40.5-0.10.0-0.6
Time to tail flick, vehicle, after self-admin3.74.04.32.1-2.1-1.82.0
Time to tail flick, test, before self-admin0.50.50.80.9-0.7-0.70.2
Time to tail flick, test, after self-admin0.70.71.0-0.70.91.0-0.6
Delta time to tail flick, vehicle, before/after SA1.41.32.81.1-1.0-0.61.7
Delta time to tail flick, test, before/after SA0.70.60.7-0.80.80.8-0.6
Tibia length0.10.20.30.40.00.6-0.5
Ambulatory time before self-admin2.42.53.51.9-1.8-1.60.8
Ambulatory time after self-admin1.11.21.81.3-1.1-1.20.4
Bone: tissue strength0.20.20.40.6-0.5-0.10.4
Total heroin consumption0.30.40.8-0.90.80.30.3
Bone: trabecular number1.42.22.8-1.71.71.4-1.2
Bone: trabecular spacing1.41.82.61.4-1.3-1.11.6
Bone: trabecular thickness0.70.81.8-0.50.90.8-1.3
Bone: trabecular tissue density0.20.20.7-0.40.3-0.1-0.8
Water consumed over 24 hours1.01.21.7-1.11.11.3-0.7
Number of responses in last shaping day0.40.51.5-0.40.10.41.2