Jund

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Liver gene expression Jund 0.02 0.01 9.9e-03 0.01 0.01 0 0 1.3e-02 5.5e-02 3.4e-01 8.5e-02
2 RMTg gene expression Jund 0.23 0.11 3.4e-06 0.21 0.2 0.25 0.22 2.3e-06 6.1e-06 2.4e-07 2.1e-06
3 Brain gene expression Jund 0.14 0.06 0.0e+00 0.2 0.2 0.2 0.2 1.9e-18 2.6e-18 2.0e-18 1.5e-18
4 Adipose gene expression Jund 0.03 0.02 3.6e-03 0 0.01 0.01 0.01 7.8e-02 8.4e-03 1.6e-02 2.2e-02

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density1.11.96.4-2.50.70.90.3
Area under the delay curve0.10.10.20.3-0.5-0.10.2
BMI with tail1.34.56.4-2.52.32.01.4
BMI without tail2.67.99.9-3.12.82.82.5
Body weight4.720.730.0-5.54.64.53.3
Weight adjusted by age1.62.52.8-1.71.61.61.4
Bone surface0.71.24.1-2.00.60.4-0.2
Bone volume1.42.67.4-2.71.11.10.5
Breakpoint value in progressive ratio session0.10.10.2-0.2-0.2-0.1-0.5
Number of licking bursts0.10.20.50.7-0.3-0.3-0.2
Context. condit. distance diff. score0.30.41.21.10.50.10.0
Locomotion velocity, session 10.90.92.10.9-0.4-0.8-1.5
Locomotion distance, session 12.32.94.91.3-1.5-1.7-2.2
Locomotion velocity, session 20.40.51.0-0.30.61.00.7
Locomotion distance, session 22.83.95.71.3-2.1-2.0-2.4
Locomotion velocity, session 31.21.43.92.0-0.7-0.8-0.7
Locomotion distance, session 30.50.61.10.3-0.6-0.8-1.1
Stereotopy head waving bouts, day 31.21.44.02.0-0.6-0.7-0.8
Stereotopy head waving duration, day 30.60.72.61.6-0.2-0.1-0.2
Locomotion velocity, session 71.01.11.51.2-1.0-1.0-1.0
Locomotion distance, session 71.01.21.60.8-1.2-1.3-1.0
Stereotopy head waving bouts, day 70.00.10.10.20.10.2-0.3
Stereotopy head waving duration, day 70.20.30.50.30.60.70.3
Locomotion velocity, session 83.23.88.83.0-1.1-1.5-1.7
Locomotion distance, session 81.01.52.61.2-0.8-1.2-1.6
Degree of sensitization distance0.20.20.50.7-0.5-0.40.0
Degree of sensitization stereotypy0.20.30.4-0.60.60.5-0.0
Conditioned locomotion0.00.00.1-0.20.30.00.0
Cocaine response after cond. corrected0.40.51.30.10.70.51.2
Cocaine response after cond. not corrected0.20.30.80.9-0.0-0.10.5
Cocaine response before conditioning1.92.22.71.4-1.6-1.3-1.6
Saline control response0.30.40.80.3-0.6-0.5-0.9
Bone: connectivity density1.01.65.4-2.30.70.60.1
Bone: cortical apparent density0.30.40.9-0.4-1.0-0.4-0.4
Bone: cortical area6.510.015.9-4.02.93.22.3
Bone: cortical porosity0.20.30.7-0.1-0.2-0.5-0.8
Bone: cortical porosity0.20.20.7-0.1-0.1-0.5-0.9
Bone: cortical thickness4.16.711.5-3.42.42.61.6
Bone: cortical thickness2.42.94.2-1.92.01.61.0
Bone: cortical tissue density0.30.41.1-0.2-1.1-0.5-0.5
Condit. Reinf. active minus inactive responses0.30.30.5-0.70.50.7-0.0
Condit. Reinf. active-inactive response ratio0.60.61.4-1.20.40.80.3
Condit. Reinf. active responses0.30.40.6-0.70.80.70.0
Condit. Reinf. inactive responses0.20.20.5-0.30.70.40.2
Incentive salience index mean0.30.40.8-0.90.50.7-0.3
Condit. Reinf. lever presses0.30.40.7-0.80.30.5-0.7
Condit. Reinf. active minus inactive responses0.30.30.60.4-0.6-0.5-0.8
Condit. Reinf. active-inactive response ratio0.20.30.5-0.50.50.70.4
Condit. Reinf. active responses1.52.02.21.5-1.4-1.4-1.4
Condit. Reinf. inactive responses2.93.85.62.4-1.8-2.0-1.5
Condit. Reinf. lever presses0.00.10.20.4-0.00.10.2
Condit. Reinf. lever reinforcers received0.40.60.80.9-0.8-0.7-0.6
Conditioned reinforcement - actives1.52.53.0-1.51.71.51.6
Conditioned reinforcement - inactives7.911.613.0-3.13.63.53.4
Conditioned locomotion1.82.43.2-1.11.61.61.8
Patch foraging indifference point 0 sec2.03.75.9-1.12.42.11.7
Patch foraging indifference point AUC0.10.10.30.2-0.5-0.30.0
Delay disc. indifference point, 0s delay3.03.24.82.2-1.9-1.7-1.4
Delay disc. indifference point, 16s delay0.60.71.11.0-0.9-0.9-0.0
Delay disc. indifference point, 2s delay0.80.81.30.8-1.2-0.7-1.0
Delay disc. indifference point, 24s delay0.20.20.50.40.30.30.7
Delay disc. indifference point, 4s delay0.10.10.30.2-0.5-0.1-0.4
Delay disc. indifference point, 8s delay0.30.30.9-0.10.20.61.0
Indifference point function ln k0.81.42.2-1.31.51.00.8
Indifference point function log k0.81.42.2-1.31.51.00.8
Patch foraging total patch changes 0 sec3.15.98.8-1.63.02.72.3
Patch foraging total patch changes 12 sec0.50.71.00.21.00.81.0
Patch foraging total patch changes 18 sec0.10.10.40.60.1-0.20.0
Patch foraging total patch changes 24 sec0.30.41.0-0.11.00.70.5
Patch foraging total patch changes 6 sec1.01.52.4-0.01.61.41.2
Patch foraging time to switch 0 sec1.42.93.91.5-2.0-1.7-1.5
Patch foraging water rate 0 sec0.92.02.5-1.41.51.61.1
Patch foraging water rate 12 sec0.61.22.3-1.51.20.90.6
Patch foraging water rate 18 sec0.20.30.6-0.8-0.0-0.4-0.7
Patch foraging water rate 24 sec0.50.82.5-1.60.60.5-0.2
Patch foraging water rate 6 sec1.82.63.8-1.62.01.41.4
Seeking ratio, delayed vs. immediate footshock1.31.62.41.5-1.3-1.2-1.0
Distance traveled before self-admin0.40.50.7-0.40.80.80.7
Distance traveled after self-admin0.70.91.3-0.91.11.00.6
Extensor digitorum longus weight0.20.61.2-0.21.10.90.6
Bone: elastic displacement0.50.61.00.3-0.9-0.6-1.0
Bone: elastic work1.41.92.6-1.61.21.61.1
Bone: endosteal estimation0.20.40.7-0.60.60.50.9
Bone: endosteal perimeter1.32.73.3-1.51.81.71.6
Epididymis fat weight0.93.18.2-2.90.91.60.9
Delta time in closed arm before/after self-admin0.10.10.4-0.20.10.30.6
Delta time in open arm before/after self-admin0.80.81.20.3-1.1-1.0-0.9
Diff in mean of infusions in LGA sessions0.60.71.0-0.20.91.01.0
Delay discount exponential model param0.00.00.1-0.00.1-0.2-0.4
Extinction: sum of active levers before priming0.91.01.8-0.1-1.2-1.0-1.3
Active lever presses in extinction session 60.30.30.40.6-0.6-0.5-0.4
Bone: final force7.912.715.7-4.03.63.63.1
Bone: final moment7.812.515.1-3.93.63.53.1
Food consumed during 24 hour testing period0.60.91.80.0-0.9-0.9-1.3
Glucose1.01.62.2-1.31.11.51.2
Heart weight1.11.83.3-1.01.81.50.7
Delay discount hyperbolic model param0.00.00.0-0.10.2-0.2-0.2
Intermittent access intake day 1-15 change0.20.51.4-1.20.40.50.2
Intermittent access intake escalation0.10.31.0-1.00.10.2-0.1
Intermittent access intake escalation 20.60.71.9-1.40.40.60.5
Intermitt. access day 1 inactive lever presses0.10.30.5-0.30.70.70.6
Intermitt. access day 15 inactive lever presses0.00.10.10.30.4-0.10.1
Intermitt. access escalation Index0.40.50.70.9-0.7-0.8-0.6
Intermittent access day 1 total infusions1.01.62.5-0.31.51.21.6
Intermittent access day 15 total infusions0.50.81.2-1.10.90.70.7
Intermittent access terminal intake (last 3 days)0.60.81.3-1.10.80.70.8
Intermittent access total infusions1.92.22.7-1.41.51.51.6
Intermittent access day 1 locomotion2.32.93.7-1.31.91.71.8
Intermittent access day 15 total locomotion0.30.61.2-1.10.60.50.6
Intermittent access total locomotion2.53.03.1-1.71.71.81.8
Intermittent access standard deviation0.20.40.5-0.60.60.60.7
Left kidney weight0.21.21.7-1.11.11.30.7
Right kidney weight0.94.16.8-2.61.72.11.4
Cocaine induced anxiety0.91.32.0-0.11.41.31.3
Post-drug Anxiety0.10.10.30.60.00.10.1
Baseline Anxiety2.73.14.61.1-2.2-1.9-1.8
Tail length0.72.73.9-2.01.31.81.4
Length with tail1.98.213.3-3.62.53.02.0
Length without tail1.96.010.3-3.22.42.41.4
Times rat made contact with spout0.30.30.5-0.2-0.7-0.6-0.6
Lifetime Intake3.03.64.5-1.62.11.92.0
Liver weight, left0.71.22.0-0.3-1.4-0.9-1.4
Liver weight, right1.42.55.8-2.40.91.51.0
Locomotor activity0.60.91.4-1.2-0.9-0.1-1.1
Locomotor testing distance0.40.81.5-0.4-1.1-0.6-1.2
Locomotor testing rearing0.51.12.20.1-1.1-1.0-1.5
Locomotion in novel chamber0.20.31.0-1.0-0.10.3-0.1
Locomotion in novel chamber post-restriction0.50.92.7-1.7-0.2-0.1-0.8
Fecal boli incidents, locomotor time 10.10.20.5-0.3-0.7-0.2-0.1
Change in fecal boli incidents, locomotor task0.60.61.81.3-0.3-0.6-0.3
Time >=10cm from walls, locomotor time 10.00.00.1-0.3-0.0-0.20.2
Bouts of movement, locomotor time 10.60.61.1-0.2-0.9-1.0-0.7
Total resting periods, locomotor time 11.01.22.00.2-1.2-1.4-1.0
Rest time, locomotor task time 10.20.30.80.9-0.3-0.40.1
Distance moved, locomotor task time 10.00.00.00.20.2-0.1-0.0
Vertical activity count, locomotor time 10.00.10.2-0.5-0.3-0.0-0.4
Time >=10cm from walls, locomotor time 20.40.60.80.7-0.9-0.8-0.6
Bouts of movement, locomotor time 20.20.30.40.6-0.5-0.5-0.6
Total resting periods, locomotor time 20.10.20.30.5-0.3-0.4-0.4
Rest time, locomotor task time 20.20.20.5-0.30.40.50.7
Distance moved, locomotor task time 20.00.00.10.3-0.0-0.1-0.0
Vertical activity count, locomotor time 20.00.00.10.0-0.20.2-0.1
Light reinforcement 10.00.10.20.0-0.00.20.5
Light reinforcement 20.40.72.00.30.40.71.4
Bone: marrow area0.10.30.6-0.60.50.40.7
Bone: maximum diameter3.05.56.4-2.32.52.52.0
Bone: maximum force6.611.817.4-4.23.33.42.6
Bone: maximum moment6.110.715.6-3.93.23.32.5
Mean time between licks in bursts1.33.24.2-1.81.52.01.7
Mean num. licks in bursts0.20.31.2-1.10.00.1-0.1
Cd content in liver2.93.25.8-2.41.41.61.6
Co content in liver0.00.00.00.2-0.00.0-0.0
Cu content in liver1.82.13.91.0-1.2-1.4-2.0
Fe content in liver0.91.02.50.7-1.6-0.9-0.7
K content in liver2.52.44.82.2-1.3-1.3-1.1
Mg content in liver0.20.20.60.80.1-0.3-0.2
Mn content in liver0.10.10.20.30.40.2-0.1
Na content in liver3.73.94.81.7-2.2-1.9-2.1
Rb content in liver2.52.93.9-0.72.01.82.0
Se content in liver0.40.40.70.7-0.4-0.5-0.8
Sr content in liver0.40.30.6-0.2-0.8-0.7-0.3
Zn content in liver0.10.10.20.2-0.5-0.4-0.4
Bone: minimum diameter2.34.18.0-2.81.51.91.6
Time in familiar zone, hab. session 10.20.10.4-0.70.00.30.3
Time in novel zone, hab. session 10.00.00.00.10.20.10.0
Total zone transitions, hab. session 10.60.91.50.3-1.0-1.0-1.2
Total locomotion distance, hab. session 11.82.54.00.5-1.9-1.5-2.0
Locomotion velocity, hab. session 11.82.53.90.7-1.8-1.5-2.0
Time in familiar zone, hab. session 20.10.10.1-0.10.30.20.3
Time in novel zone, hab. session 20.10.10.2-0.4-0.20.20.2
Total zone transitions, hab. session 20.10.10.30.20.0-0.4-0.5
Total locomotion distance, hab. session 20.40.51.4-0.0-0.3-0.6-1.2
Locomotion velocity, hab. session 20.50.71.90.2-0.5-0.8-1.4
Novel to familiar place preference ratio0.50.51.2-1.1-0.00.60.8
Novelty place preference0.30.30.6-0.8-0.10.50.7
Time in novel zone, NPP test0.20.20.5-0.7-0.40.20.4
Total zone transitions, NPP test0.91.22.40.6-0.8-1.2-1.5
Total locomotion distance, NPP test1.92.65.00.9-1.4-1.6-2.2
Locomotion velocity, NPP test1.82.64.51.1-1.4-1.6-2.1
Intraocular pressure1.52.13.0-0.91.31.71.7
Delta distance traveled before/after self-admin0.50.61.3-1.10.60.70.5
Delta ambulatory time before/after self-admin0.10.20.4-0.60.40.40.2
Parametrial fat weight3.58.210.6-2.42.82.93.3
Pavlov. Cond. lever latency0.30.41.10.10.50.21.1
Pavlov. Cond. magazine entry latency0.10.10.4-0.60.30.30.3
Pavlov. Cond. change in total contacts0.40.40.7-0.70.60.90.3
Pavlov. Cond. index score0.20.20.6-0.1-0.5-0.4-0.8
Pavlov. Cond. latency score0.40.51.10.3-0.7-0.5-1.0
Pavlov. Cond. lever contacts0.20.20.6-0.2-0.4-0.1-0.8
Pavlov. Cond. magazine entry number0.10.20.40.6-0.4-0.3-0.3
Pavlov. Cond. intertrial magazine entries0.10.10.4-0.00.1-0.0-0.7
Pavlov. Cond. lever-magazine prob. diff.0.10.10.3-0.0-0.4-0.3-0.6
Pavlov. Cond. response bias0.10.10.4-0.60.10.2-0.1
Pavlov. Cond. lever latency0.30.40.90.2-0.3-0.9-0.8
Pavlov. Cond. magazine entry latency0.30.30.5-0.30.40.70.7
Pavlov. Cond. change in total contacts0.30.40.80.20.50.90.8
Pavlov. Cond. index score0.60.71.4-0.20.71.21.1
Pavlov. Cond. latency score0.20.30.70.10.30.80.7
Pavlov. Cond. lever contacts0.20.30.70.10.30.80.7
Pavlov. Cond. magazine entry number0.91.21.70.8-0.9-1.3-1.3
Pavlov. Cond. intertrial magazine entries0.50.71.30.3-0.6-1.1-1.1
Pavlov. Cond. lever-magazine prob. diff.0.60.81.5-0.30.71.21.1
Pavlov. Cond. response bias0.50.71.1-0.40.61.11.0
Time in closed arm before self-admin4.15.28.2-0.72.92.62.4
Time in closed arm after self-admin4.95.27.8-0.92.52.42.8
Time in open arm before self-admin1.41.52.90.3-1.2-1.2-1.7
Time in open arm after self-admin3.23.56.60.4-1.9-1.8-2.6
Bone: periosteal estimation2.24.77.2-2.72.02.11.8
Bone: periosteal perimeter5.28.910.0-3.03.23.12.6
Bone: post-yield work0.10.10.4-0.6-0.0-0.1-0.3
Progressive ratio test 1 active lever presses2.43.04.8-1.12.21.91.6
Progressive ratio test 1 breakpoint2.22.74.3-1.02.11.81.5
Progressive ratio test 1 inactive lever presses1.21.72.8-0.91.71.41.2
Progressive ratio test 2 active lever presses1.21.41.8-0.91.31.21.3
Progressive ratio test 2 breakpoint0.91.01.3-0.81.11.01.1
Progressive ratio test 2 inactive lever presses1.21.93.1-1.01.81.41.3
Incentive Sensitization - Responses0.10.20.6-0.30.30.20.8
Incentive Sensitization - Breakpoint0.10.10.3-0.20.0-0.00.6
Sum of active levers in priming session hrs 5-63.33.14.40.5-2.1-1.9-2.0
Progressive ratio0.00.00.0-0.1-0.0-0.00.2
Food seeking constrained by brief footshock0.10.10.2-0.4-0.5-0.2-0.3
Seeking ratio, punishment vs. effort0.30.40.7-0.1-0.7-0.5-0.9
Retroperitoneal fat weight2.912.213.3-3.63.43.63.3
Reaction time number correct0.40.82.0-0.4-0.6-0.8-1.4
Reaction time mean minus median0.00.10.30.5-0.2-0.1-0.2
Reaction time mean minus median AUC0.10.20.40.60.40.2-0.0
Reaction time num false alarms0.81.11.8-0.31.21.31.0
Reaction time num false alarms AUC0.50.81.5-0.10.91.20.9
Reaction time trials correct on left0.40.82.0-0.4-0.6-0.8-1.4
Reaction time trials on left0.40.71.8-0.5-0.6-0.7-1.3
Reaction time mean0.91.52.8-0.51.11.31.7
Reaction time mean AUC0.40.61.40.10.60.71.2
Median of all reaction times1.31.93.8-0.61.21.42.0
Reaction time omissions0.81.11.6-0.91.01.31.1
Reaction time false alarm rate1.21.62.5-0.31.21.61.5
Reaction time premature initiation rate0.40.51.40.3-0.4-0.7-1.2
Reaction time premature initiations0.50.92.4-0.0-0.5-0.9-1.6
Std. dev. reaction times0.20.40.7-0.60.60.80.7
Reaction time trials completed0.40.71.8-0.5-0.6-0.7-1.3
Reaction time trials AUC0.30.61.3-0.7-0.4-0.6-1.1
Run reversals in cocaine runway, females3.83.85.2-1.82.31.91.9
Run reversals in cocaine runway, males1.51.51.91.1-1.0-1.3-1.4
Latency to leave start box in cocaine runway0.00.00.1-0.3-0.0-0.30.0
Latency to leave start box in cocaine runway, F0.30.30.8-0.90.50.20.3
Latency to leave start box in cocaine runway, M0.40.40.70.9-0.6-0.7-0.1
Std. dev. time between licks in bursts2.02.73.9-2.01.41.71.5
Total sessions with >9 infusions4.96.09.1-2.03.02.42.3
Short access day 1 total inactive lever presses2.12.83.8-1.21.91.51.9
Short access day 10 total inactive lever presses0.51.13.71.9-0.3-0.7-0.4
Short access day 1 total infusions4.15.56.9-2.42.62.32.1
Short access day 10 total infusions1.11.42.4-1.01.61.11.1
Short access total infusions2.83.55.5-1.42.31.81.8
Short access day 1 locomotion6.88.410.3-2.33.23.13.0
Short access day 10 total locomotion1.32.34.3-2.11.61.40.7
Short access total locomotion3.54.25.2-2.12.32.11.7
One hour access (0.3 mA shock)0.80.91.4-0.60.71.21.2
Compulsive drug intake0.70.91.11.1-1.0-1.0-0.6
One hour access (shock baseline)2.33.54.4-1.51.82.12.0
Social response proportion2.93.25.1-2.31.61.91.3
Social responses0.30.41.4-1.2-0.10.5-0.3
Social time0.00.10.20.2-0.00.50.0
Soleus weight1.13.24.4-1.31.81.92.1
Bone: stiffness4.98.09.3-3.03.02.92.3
Tibialis anterior weight0.10.41.3-1.1-0.00.1-0.5
Time to tail flick, vehicle, before self-admin0.30.30.5-0.70.60.30.6
Time to tail flick, vehicle, after self-admin0.00.00.10.10.20.20.3
Time to tail flick, test, before self-admin2.02.13.1-0.71.51.81.6
Time to tail flick, test, after self-admin0.10.10.20.4-0.4-0.50.0
Delta time to tail flick, vehicle, before/after SA0.50.40.80.9-0.6-0.6-0.6
Delta time to tail flick, test, before/after SA0.80.91.50.0-1.1-1.2-0.9
Tibia length0.51.42.2-1.21.51.20.8
Ambulatory time before self-admin0.40.71.0-0.40.91.00.9
Ambulatory time after self-admin1.21.41.8-1.31.21.30.8
Bone: tissue strength0.00.00.1-0.30.00.20.2
Total heroin consumption0.10.10.2-0.30.00.40.3
Bone: trabecular number1.32.26.9-2.60.81.00.4
Bone: trabecular spacing0.20.30.80.9-0.5-0.20.0
Bone: trabecular thickness1.01.34.0-2.00.70.70.1
Bone: trabecular tissue density0.50.71.20.3-0.9-0.9-1.1
Water consumed over 24 hours0.20.31.0-1.0-0.0-0.2-0.6
Number of responses in last shaping day0.40.51.2-1.10.60.50.2