Jmjd7

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Brain gene expression Jmjd7 0.08 0.04 7.5e-10 0.1 0.1 0.1 0.1 3.2e-09 1.3e-09 3.9e-09 3.3e-09
2 PL gene expression Jmjd7 0.03 0.02 1.6e-04 0.03 0.03 0.03 0.03 4.1e-04 1.1e-04 7.5e-04 2.1e-04
3 Liver gene expression Jmjd7 0.05 0.03 7.2e-03 0 0 0 0 1.3e-01 9.4e-02 1.0e-01 9.2e-02
4 Brain alternative TSS NM_001114656.1 0.03 0.02 5.4e-03 0.02 0.02 0.02 0.01 6.2e-03 1.0e-02 4.0e-03 1.3e-02

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density0.71.12.51.61.3-0.30.6
Area under the delay curve2.93.45.81.82.4-0.91.9
BMI with tail3.813.320.84.63.9-2.43.3
BMI without tail4.313.026.35.14.2-1.92.2
Body weight4.318.930.05.54.6-3.43.6
Weight adjusted by age0.91.32.01.11.2-1.40.8
Bone surface0.40.71.81.40.7-0.30.7
Bone volume0.51.02.11.40.8-0.40.9
Breakpoint value in progressive ratio session0.30.30.8-0.3-0.60.9-0.3
Number of licking bursts0.30.51.5-0.1-0.41.2-0.5
Context. condit. distance diff. score0.70.92.51.60.80.1-0.6
Locomotion velocity, session 11.21.33.1-1.8-0.80.7-0.9
Locomotion distance, session 10.81.01.7-1.1-0.40.8-1.3
Locomotion velocity, session 21.31.53.71.41.90.00.6
Locomotion distance, session 20.71.02.2-0.4-0.21.2-1.5
Locomotion velocity, session 30.40.51.00.40.80.21.0
Locomotion distance, session 30.60.72.70.1-0.11.6-0.3
Stereotopy head waving bouts, day 33.84.54.91.92.2-2.12.2
Stereotopy head waving duration, day 35.26.27.72.32.8-2.32.5
Locomotion velocity, session 70.40.40.70.50.50.8-0.7
Locomotion distance, session 71.01.33.3-0.1-0.51.3-1.8
Stereotopy head waving bouts, day 70.30.31.0-0.3-0.1-0.41.0
Stereotopy head waving duration, day 70.60.71.9-0.3-0.2-0.91.4
Locomotion velocity, session 82.22.75.52.12.4-0.50.7
Locomotion distance, session 80.91.22.61.10.70.8-1.6
Degree of sensitization distance0.70.71.1-0.8-1.1-0.5-0.9
Degree of sensitization stereotypy0.50.51.2-0.9-1.10.20.2
Conditioned locomotion1.11.32.91.71.4-0.60.3
Cocaine response after cond. corrected0.91.13.5-0.5-0.51.9-0.5
Cocaine response after cond. not corrected1.11.33.9-0.7-0.42.0-0.7
Cocaine response before conditioning0.10.10.2-0.30.2-0.1-0.5
Saline control response2.33.16.21.21.2-2.51.8
Bone: connectivity density0.40.60.90.70.6-1.00.7
Bone: cortical apparent density1.62.24.9-1.6-2.20.7-0.8
Bone: cortical area1.72.63.41.91.6-1.31.6
Bone: cortical porosity0.70.71.60.20.91.3-0.7
Bone: cortical porosity0.60.61.70.71.30.5-0.1
Bone: cortical thickness1.42.33.11.81.8-1.01.4
Bone: cortical thickness0.10.20.30.4-0.00.50.5
Bone: cortical tissue density1.52.04.6-1.6-2.10.7-0.7
Condit. Reinf. active minus inactive responses1.21.43.0-1.5-1.7-0.5-0.1
Condit. Reinf. active-inactive response ratio0.30.40.7-0.0-0.2-0.80.8
Condit. Reinf. active responses2.83.57.3-2.5-2.7-0.2-0.7
Condit. Reinf. inactive responses2.93.66.3-2.3-2.50.7-1.5
Incentive salience index mean2.22.75.2-2.3-2.3-0.3-0.6
Condit. Reinf. lever presses1.52.24.2-2.1-1.9-0.4-0.9
Condit. Reinf. active minus inactive responses0.30.41.20.2-0.4-1.10.4
Condit. Reinf. active-inactive response ratio0.10.20.40.2-0.5-0.60.2
Condit. Reinf. active responses0.60.82.40.4-0.3-1.60.8
Condit. Reinf. inactive responses1.01.33.50.2-0.0-1.91.3
Condit. Reinf. lever presses2.12.96.20.30.2-2.52.3
Condit. Reinf. lever reinforcers received0.71.03.00.1-0.5-1.70.8
Conditioned reinforcement - actives0.10.10.2-0.5-0.20.2-0.3
Conditioned reinforcement - inactives0.20.30.70.30.00.8-0.7
Conditioned locomotion0.40.50.9-0.30.5-0.90.9
Patch foraging indifference point 0 sec3.97.112.31.31.9-3.53.3
Patch foraging indifference point AUC1.62.34.1-2.0-1.70.9-1.1
Delay disc. indifference point, 0s delay1.11.22.60.00.7-1.21.6
Delay disc. indifference point, 16s delay1.01.12.20.71.3-0.21.5
Delay disc. indifference point, 2s delay0.20.30.60.80.5-0.30.2
Delay disc. indifference point, 24s delay0.20.30.9-0.9-0.30.4-0.2
Delay disc. indifference point, 4s delay1.31.33.01.31.7-0.30.8
Delay disc. indifference point, 8s delay5.86.89.52.53.1-1.73.0
Indifference point function ln k2.13.77.82.82.4-0.70.9
Indifference point function log k2.13.77.82.82.4-0.70.9
Patch foraging total patch changes 0 sec3.46.410.81.21.7-3.33.3
Patch foraging total patch changes 12 sec0.60.81.9-0.7-0.5-1.40.9
Patch foraging total patch changes 18 sec0.40.61.4-1.2-1.0-0.2-0.3
Patch foraging total patch changes 24 sec1.42.53.71.11.4-1.91.7
Patch foraging total patch changes 6 sec0.40.50.9-0.7-0.4-0.90.8
Patch foraging time to switch 0 sec0.40.91.6-1.3-1.1-0.80.3
Patch foraging water rate 0 sec0.20.41.21.10.5-0.10.4
Patch foraging water rate 12 sec0.51.12.80.7-0.11.7-1.0
Patch foraging water rate 18 sec0.61.02.01.41.10.80.3
Patch foraging water rate 24 sec0.20.30.60.6-0.40.80.3
Patch foraging water rate 6 sec1.52.24.4-0.7-1.52.1-1.3
Seeking ratio, delayed vs. immediate footshock0.40.41.30.4-0.40.3-1.2
Distance traveled before self-admin0.40.61.21.10.9-0.30.5
Distance traveled after self-admin0.00.00.10.1-0.4-0.10.1
Extensor digitorum longus weight0.31.32.01.41.4-0.41.2
Bone: elastic displacement0.20.30.9-0.10.2-0.40.9
Bone: elastic work1.21.63.90.60.6-1.32.0
Bone: endosteal estimation0.10.20.30.4-0.10.6-0.5
Bone: endosteal perimeter0.00.00.10.1-0.10.2-0.3
Epididymis fat weight0.51.63.41.61.8-0.30.7
Delta time in closed arm before/after self-admin0.80.72.1-0.1-0.40.8-1.5
Delta time in open arm before/after self-admin0.60.61.51.20.30.8-0.2
Diff in mean of infusions in LGA sessions0.30.40.7-0.8-0.8-0.3-0.2
Delay discount exponential model param2.22.54.8-1.6-2.20.6-1.5
Extinction: sum of active levers before priming0.30.40.7-0.9-0.40.7-0.3
Active lever presses in extinction session 60.10.10.2-0.30.20.4-0.3
Bone: final force0.20.30.70.90.3-0.60.4
Bone: final moment0.20.30.60.80.2-0.50.5
Food consumed during 24 hour testing period0.30.30.90.1-0.11.0-0.7
Glucose0.71.12.71.61.10.8-0.1
Heart weight2.74.18.83.02.4-1.20.6
Delay discount hyperbolic model param2.12.34.3-1.6-2.10.6-1.4
Intermittent access intake day 1-15 change0.30.71.71.00.31.3-0.4
Intermittent access intake escalation0.30.61.31.20.40.9-0.0
Intermittent access intake escalation 21.61.85.30.70.22.3-1.2
Intermitt. access day 1 inactive lever presses0.41.62.91.31.4-1.70.4
Intermitt. access day 15 inactive lever presses0.10.30.70.90.5-0.0-0.1
Intermitt. access escalation Index0.40.51.0-0.0-0.6-1.00.9
Intermittent access day 1 total infusions0.10.20.3-0.5-0.0-0.30.5
Intermittent access day 15 total infusions0.10.20.40.60.30.20.3
Intermittent access terminal intake (last 3 days)0.30.40.90.70.31.0-0.1
Intermittent access total infusions0.10.10.10.30.30.00.4
Intermittent access day 1 locomotion1.31.62.10.71.4-1.51.4
Intermittent access day 15 total locomotion0.30.61.31.10.80.6-0.2
Intermittent access total locomotion0.20.30.60.60.8-0.10.4
Intermittent access standard deviation0.20.51.20.70.31.1-0.3
Left kidney weight2.310.720.44.54.4-1.60.8
Right kidney weight3.616.327.95.35.3-2.71.5
Cocaine induced anxiety0.81.22.41.01.5-1.20.2
Post-drug Anxiety1.01.11.81.31.4-0.6-0.7
Baseline Anxiety0.20.30.70.0-0.40.4-0.8
Tail length1.14.411.03.32.4-1.00.1
Length with tail0.94.17.42.72.1-1.81.2
Length without tail0.62.02.61.61.4-1.11.5
Times rat made contact with spout0.70.81.20.60.8-0.91.1
Lifetime Intake0.20.20.60.10.3-0.10.8
Liver weight, left2.94.87.32.71.9-2.11.8
Liver weight, right2.64.55.22.32.2-1.92.2
Locomotor activity0.00.10.2-0.5-0.1-0.0-0.1
Locomotor testing distance0.10.30.8-0.9-0.40.1-0.2
Locomotor testing rearing0.91.92.8-1.7-1.51.0-1.2
Locomotion in novel chamber0.30.40.70.40.5-0.80.7
Locomotion in novel chamber post-restriction0.61.02.71.60.9-0.70.3
Fecal boli incidents, locomotor time 10.20.30.6-0.8-0.30.50.4
Change in fecal boli incidents, locomotor task1.21.13.01.71.2-0.30.1
Time >=10cm from walls, locomotor time 10.30.30.9-0.2-0.60.9-0.4
Bouts of movement, locomotor time 11.82.04.1-2.0-1.51.1-0.6
Total resting periods, locomotor time 12.22.44.8-2.2-1.71.1-0.8
Rest time, locomotor task time 10.10.10.2-0.3-0.50.30.1
Distance moved, locomotor task time 10.20.30.3-0.6-0.5-0.60.3
Vertical activity count, locomotor time 10.00.10.40.2-0.2-0.60.1
Time >=10cm from walls, locomotor time 25.17.610.43.22.7-2.92.1
Bouts of movement, locomotor time 20.30.51.40.2-0.3-0.91.2
Total resting periods, locomotor time 20.30.41.10.0-0.4-0.71.0
Rest time, locomotor task time 24.15.36.4-2.4-2.12.5-2.1
Distance moved, locomotor task time 21.82.23.91.31.2-2.01.3
Vertical activity count, locomotor time 22.13.04.41.91.2-2.11.6
Light reinforcement 11.84.311.6-0.00.2-3.42.4
Light reinforcement 20.71.02.2-1.5-1.3-0.1-0.5
Bone: marrow area0.10.20.30.50.00.4-0.4
Bone: maximum diameter0.61.21.51.20.8-1.11.2
Bone: maximum force1.11.92.91.71.3-1.41.1
Bone: maximum moment0.91.62.41.51.2-1.21.0
Mean time between licks in bursts0.20.50.7-0.6-0.10.9-0.9
Mean num. licks in bursts0.71.12.50.50.8-1.61.0
Cd content in liver0.20.30.30.60.4-0.50.6
Co content in liver0.50.61.00.71.00.20.9
Cu content in liver1.01.22.0-0.5-0.81.4-1.4
Fe content in liver3.03.67.7-2.3-2.80.4-1.1
K content in liver0.40.30.80.90.60.4-0.1
Mg content in liver0.80.81.91.40.70.80.5
Mn content in liver1.51.62.11.51.4-1.21.0
Na content in liver0.70.71.1-0.7-0.80.8-1.1
Rb content in liver3.33.97.12.72.4-0.41.5
Se content in liver0.00.00.00.1-0.00.2-0.2
Sr content in liver0.00.00.1-0.10.3-0.0-0.0
Zn content in liver1.51.72.3-0.8-1.51.4-1.4
Bone: minimum diameter1.93.55.22.02.3-1.51.6
Time in familiar zone, hab. session 10.90.91.2-1.0-1.01.1-0.8
Time in novel zone, hab. session 11.31.31.71.11.0-1.31.2
Total zone transitions, hab. session 10.10.20.4-0.5-0.20.3-0.7
Total locomotion distance, hab. session 10.10.20.4-0.40.10.2-0.6
Locomotion velocity, hab. session 10.20.20.5-0.7-0.10.1-0.7
Time in familiar zone, hab. session 20.20.20.4-0.0-0.2-0.40.7
Time in novel zone, hab. session 20.30.30.80.70.9-0.10.0
Total zone transitions, hab. session 20.30.40.90.10.30.7-0.9
Total locomotion distance, hab. session 20.10.10.30.20.30.2-0.6
Locomotion velocity, hab. session 20.10.10.3-0.10.10.1-0.5
Novel to familiar place preference ratio1.31.53.10.90.8-1.81.1
Novelty place preference1.31.42.90.90.9-1.71.0
Time in novel zone, NPP test1.11.22.60.80.8-1.60.9
Total zone transitions, NPP test1.21.84.1-0.30.02.0-1.7
Total locomotion distance, NPP test0.81.12.00.40.91.3-1.4
Locomotion velocity, NPP test0.81.11.80.40.91.3-1.3
Intraocular pressure0.71.02.3-1.5-1.0-0.20.8
Delta distance traveled before/after self-admin0.30.30.5-0.7-0.7-0.20.0
Delta ambulatory time before/after self-admin0.60.71.4-1.2-1.1-0.3-0.3
Parametrial fat weight0.10.31.00.00.4-1.0-0.1
Pavlov. Cond. lever latency0.20.20.60.50.10.00.8
Pavlov. Cond. magazine entry latency0.50.62.1-0.5-0.4-1.4-0.2
Pavlov. Cond. change in total contacts0.80.82.9-0.1-0.30.6-1.7
Pavlov. Cond. index score0.30.40.7-0.8-0.5-0.5-0.6
Pavlov. Cond. latency score0.30.30.8-0.6-0.2-0.9-0.3
Pavlov. Cond. lever contacts0.30.41.0-0.7-0.3-0.1-1.0
Pavlov. Cond. magazine entry number0.30.41.40.10.01.20.2
Pavlov. Cond. intertrial magazine entries0.50.61.3-0.5-1.20.90.3
Pavlov. Cond. lever-magazine prob. diff.0.40.51.0-0.9-0.5-0.1-1.0
Pavlov. Cond. response bias0.70.81.8-0.9-0.80.1-1.3
Pavlov. Cond. lever latency2.53.46.7-1.1-0.82.6-2.3
Pavlov. Cond. magazine entry latency0.80.92.7-0.1-0.6-1.60.8
Pavlov. Cond. change in total contacts0.40.62.0-0.0-0.6-1.40.4
Pavlov. Cond. index score1.01.43.70.3-0.4-1.91.2
Pavlov. Cond. latency score0.70.92.50.3-0.4-1.60.9
Pavlov. Cond. lever contacts2.94.18.41.10.7-2.92.5
Pavlov. Cond. magazine entry number0.40.61.7-0.10.51.3-0.5
Pavlov. Cond. intertrial magazine entries0.60.92.21.01.50.10.7
Pavlov. Cond. lever-magazine prob. diff.0.91.23.50.3-0.3-1.91.1
Pavlov. Cond. response bias2.63.58.10.90.2-2.82.2
Time in closed arm before self-admin1.41.83.9-2.0-1.80.3-0.1
Time in closed arm after self-admin1.71.83.4-1.7-1.80.5-1.0
Time in open arm before self-admin1.01.11.80.81.1-1.01.3
Time in open arm after self-admin1.41.54.02.01.40.50.3
Bone: periosteal estimation0.51.01.91.41.0-0.60.8
Bone: periosteal perimeter1.01.62.11.51.5-1.01.1
Bone: post-yield work0.71.02.80.20.21.0-1.7
Progressive ratio test 1 active lever presses0.10.10.2-0.5-0.4-0.20.4
Progressive ratio test 1 breakpoint0.10.10.2-0.5-0.3-0.10.2
Progressive ratio test 1 inactive lever presses0.10.10.2-0.4-0.4-0.0-0.3
Progressive ratio test 2 active lever presses0.10.10.3-0.4-0.60.10.3
Progressive ratio test 2 breakpoint0.10.10.2-0.2-0.4-0.10.4
Progressive ratio test 2 inactive lever presses0.00.00.10.30.10.10.0
Incentive Sensitization - Responses0.00.10.20.0-0.10.20.5
Incentive Sensitization - Breakpoint0.10.10.30.0-0.10.10.5
Sum of active levers in priming session hrs 5-61.21.12.4-0.2-0.51.6-1.4
Progressive ratio0.10.10.2-0.2-0.50.0-0.2
Food seeking constrained by brief footshock0.00.10.2-0.20.0-0.4-0.2
Seeking ratio, punishment vs. effort0.00.10.1-0.30.0-0.30.1
Retroperitoneal fat weight2.410.113.93.22.8-3.73.0
Reaction time number correct1.12.15.82.41.6-0.10.5
Reaction time mean minus median0.51.21.91.10.9-1.41.0
Reaction time mean minus median AUC1.23.13.51.91.7-1.81.7
Reaction time num false alarms0.00.00.1-0.10.10.2-0.3
Reaction time num false alarms AUC0.10.10.2-0.4-0.40.3-0.4
Reaction time trials correct on left1.12.15.82.41.6-0.10.5
Reaction time trials on left1.12.15.72.41.6-0.10.5
Reaction time mean0.61.02.3-1.2-1.5-0.2-0.5
Reaction time mean AUC0.30.41.0-0.7-1.0-0.4-0.0
Median of all reaction times1.92.75.3-2.0-2.30.5-1.1
Reaction time omissions0.81.12.50.70.8-1.60.9
Reaction time false alarm rate0.50.71.9-1.4-0.90.1-0.4
Reaction time premature initiation rate1.31.83.3-1.8-1.8-0.5-0.7
Reaction time premature initiations0.20.40.9-0.5-0.9-0.5-0.4
Std. dev. reaction times0.81.53.00.80.6-1.71.4
Reaction time trials completed1.12.15.72.41.6-0.10.5
Reaction time trials AUC0.91.64.82.21.2-0.10.4
Run reversals in cocaine runway, females1.01.01.90.60.31.3-1.4
Run reversals in cocaine runway, males1.11.11.6-1.1-0.91.3-0.8
Latency to leave start box in cocaine runway0.20.20.5-0.5-0.7-0.40.0
Latency to leave start box in cocaine runway, F0.10.10.3-0.6-0.4-0.0-0.1
Latency to leave start box in cocaine runway, M0.30.30.7-0.1-0.8-0.7-0.1
Std. dev. time between licks in bursts1.92.63.41.61.8-1.31.7
Total sessions with >9 infusions0.60.82.0-0.50.2-0.91.4
Short access day 1 total inactive lever presses1.21.63.41.51.8-0.40.6
Short access day 10 total inactive lever presses0.61.53.41.40.80.3-1.8
Short access day 1 total infusions0.10.10.3-0.40.20.20.5
Short access day 10 total infusions0.30.40.6-0.5-0.3-0.70.8
Short access total infusions0.40.51.7-0.30.1-0.51.3
Short access day 1 locomotion0.40.51.2-1.1-0.5-0.20.6
Short access day 10 total locomotion1.11.94.71.52.20.01.0
Short access total locomotion1.51.82.90.51.4-1.41.7
One hour access (0.3 mA shock)1.01.13.20.2-0.71.8-0.9
Compulsive drug intake0.20.20.50.5-0.30.7-0.2
One hour access (shock baseline)0.10.10.2-0.5-0.50.10.0
Social response proportion1.01.22.9-0.8-1.7-0.3-1.0
Social responses2.33.07.2-2.1-2.7-0.2-0.7
Social time0.30.40.9-0.4-0.9-0.40.5
Soleus weight0.10.30.9-0.5-1.0-0.20.3
Bone: stiffness0.50.91.61.20.9-1.00.3
Tibialis anterior weight0.10.30.8-0.0-0.9-0.20.5
Time to tail flick, vehicle, before self-admin0.90.91.70.50.9-0.91.3
Time to tail flick, vehicle, after self-admin0.50.61.80.60.50.01.4
Time to tail flick, test, before self-admin0.40.41.0-0.20.0-1.00.7
Time to tail flick, test, after self-admin0.70.81.30.70.7-0.91.1
Delta time to tail flick, vehicle, before/after SA0.40.41.31.10.40.3-0.0
Delta time to tail flick, test, before/after SA0.20.20.50.30.2-0.10.7
Tibia length1.02.73.81.31.9-2.01.3
Ambulatory time before self-admin0.60.91.11.11.0-0.51.0
Ambulatory time after self-admin0.30.30.7-0.6-0.80.4-0.3
Bone: tissue strength0.40.40.90.70.90.0-0.3
Total heroin consumption0.40.51.3-0.10.31.1-0.7
Bone: trabecular number0.81.33.81.91.20.20.0
Bone: trabecular spacing1.01.32.3-1.5-0.8-1.21.0
Bone: trabecular thickness0.40.50.9-0.3-0.90.9-0.5
Bone: trabecular tissue density4.46.511.1-1.3-1.53.3-3.3
Water consumed over 24 hours0.30.41.0-0.7-1.00.2-0.1
Number of responses in last shaping day0.30.30.7-0.9-0.4-0.50.3