Ifngr1

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Eye intron excision ratio chr1_14337954_14341849 0.82 0.11 7.3e-03 -0.01 0.08 0.02 0.1 5.8e-01 2.3e-02 1.6e-01 1.2e-02
2 Liver gene expression Ifngr1 0.03 0.03 1.9e-03 0.01 0.01 0.02 0.01 9.2e-03 1.2e-02 6.4e-03 1.3e-02
3 Brain gene expression Ifngr1 0.03 0.03 2.3e-03 0.01 0.01 0.01 0.01 2.0e-02 2.9e-02 1.4e-02 4.3e-02

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
Bone: apparent density1.22.12.4-1.3-1.5-1.5
Area under the delay curve0.40.40.50.5-0.6-0.7
BMI with tail0.10.30.6-0.10.60.8
BMI without tail0.51.01.4-1.2-0.9-0.8
Body weight0.52.35.0-2.2-1.2-0.7
Weight adjusted by age1.01.11.60.6-1.1-1.3
Bone surface0.10.20.3-0.3-0.6-0.5
Bone volume0.50.81.0-1.0-0.8-0.8
Breakpoint value in progressive ratio session0.20.30.7-0.80.00.2
Number of licking bursts1.11.32.3-1.1-1.5-0.7
Context. condit. distance diff. score1.92.35.12.31.00.8
Locomotion velocity, session 10.00.00.10.3-0.10.0
Locomotion distance, session 14.65.917.24.10.70.1
Locomotion velocity, session 20.40.40.80.4-0.6-0.9
Locomotion distance, session 21.52.15.02.2-0.5-1.0
Locomotion velocity, session 30.30.30.6-0.80.30.5
Locomotion distance, session 32.42.65.0-0.01.72.2
Stereotopy head waving bouts, day 31.31.54.5-2.10.30.3
Stereotopy head waving duration, day 31.31.64.8-2.2-0.1-0.2
Locomotion velocity, session 73.33.64.62.11.71.8
Locomotion distance, session 71.82.34.6-0.01.52.1
Stereotopy head waving bouts, day 70.40.50.9-0.9-0.5-0.6
Stereotopy head waving duration, day 71.01.21.5-1.0-1.1-1.2
Locomotion velocity, session 80.20.20.50.7-0.3-0.3
Locomotion distance, session 81.82.67.42.7-0.2-0.7
Degree of sensitization distance0.30.30.60.3-0.6-0.8
Degree of sensitization stereotypy0.91.01.6-0.4-1.2-1.2
Conditioned locomotion1.61.94.82.20.80.4
Cocaine response after cond. corrected0.70.81.40.7-0.7-1.2
Cocaine response after cond. not corrected1.31.52.70.3-1.3-1.6
Cocaine response before conditioning0.10.10.2-0.3-0.5-0.2
Saline control response0.30.40.8-0.3-0.9-0.5
Bone: connectivity density2.74.24.9-1.7-2.2-2.2
Bone: cortical apparent density0.81.13.31.80.1-0.2
Bone: cortical area1.21.85.42.30.2-0.0
Bone: cortical porosity2.73.04.9-1.31.52.2
Bone: cortical porosity2.83.14.7-1.51.52.2
Bone: cortical thickness0.20.41.11.10.1-0.0
Bone: cortical thickness1.11.21.51.21.20.9
Bone: cortical tissue density0.71.02.81.70.1-0.2
Condit. Reinf. active minus inactive responses0.20.20.30.50.50.2
Condit. Reinf. active-inactive response ratio0.60.71.21.10.80.4
Condit. Reinf. active responses0.10.10.30.10.60.2
Condit. Reinf. inactive responses0.40.51.4-1.20.10.1
Incentive salience index mean0.60.71.21.10.90.4
Condit. Reinf. lever presses0.71.01.61.31.00.5
Condit. Reinf. active minus inactive responses0.50.61.3-1.20.20.7
Condit. Reinf. active-inactive response ratio0.10.10.1-0.30.10.3
Condit. Reinf. active responses0.10.10.20.5-0.20.0
Condit. Reinf. inactive responses0.00.10.10.10.20.4
Condit. Reinf. lever presses0.20.30.5-0.70.30.6
Condit. Reinf. lever reinforcers received0.00.00.10.1-0.00.2
Conditioned reinforcement - actives0.70.71.20.3-0.9-1.1
Conditioned reinforcement - inactives0.20.20.40.1-0.6-0.6
Conditioned locomotion2.53.04.3-0.9-2.1-2.0
Patch foraging indifference point 0 sec3.45.59.30.22.73.1
Patch foraging indifference point AUC0.91.11.4-0.9-1.0-1.2
Delay disc. indifference point, 0s delay1.81.92.11.41.31.4
Delay disc. indifference point, 16s delay0.10.10.40.6-0.1-0.1
Delay disc. indifference point, 2s delay0.70.81.30.4-1.0-1.1
Delay disc. indifference point, 24s delay1.31.32.0-0.3-1.4-1.3
Delay disc. indifference point, 4s delay0.20.20.40.60.30.3
Delay disc. indifference point, 8s delay0.20.20.70.80.00.0
Indifference point function ln k0.10.20.30.50.20.4
Indifference point function log k0.10.20.30.50.20.4
Patch foraging total patch changes 0 sec2.94.77.9-0.12.52.8
Patch foraging total patch changes 12 sec1.51.92.41.21.51.4
Patch foraging total patch changes 18 sec0.81.11.9-1.40.70.9
Patch foraging total patch changes 24 sec3.23.95.5-2.31.61.9
Patch foraging total patch changes 6 sec1.21.72.7-0.91.41.6
Patch foraging time to switch 0 sec0.30.51.41.20.3-0.0
Patch foraging water rate 0 sec1.11.74.8-2.2-0.5-0.3
Patch foraging water rate 12 sec3.75.615.7-4.0-1.0-0.3
Patch foraging water rate 18 sec1.72.35.3-2.3-1.1-0.6
Patch foraging water rate 24 sec0.81.11.4-1.20.81.1
Patch foraging water rate 6 sec1.21.82.6-1.6-1.2-1.1
Seeking ratio, delayed vs. immediate footshock0.30.40.6-0.70.60.4
Distance traveled before self-admin1.51.62.0-0.9-1.4-1.4
Distance traveled after self-admin0.00.00.10.10.20.2
Extensor digitorum longus weight0.10.40.60.8-0.3-0.6
Bone: elastic displacement3.23.67.1-2.7-1.4-1.3
Bone: elastic work1.82.33.6-1.9-1.4-1.2
Bone: endosteal estimation0.10.10.2-0.0-0.4-0.5
Bone: endosteal perimeter1.12.47.02.60.3-0.2
Epididymis fat weight0.20.40.6-0.40.60.8
Delta time in closed arm before/after self-admin4.64.46.9-0.4-2.5-2.6
Delta time in open arm before/after self-admin5.85.68.70.42.83.0
Diff in mean of infusions in LGA sessions0.40.41.21.10.1-0.0
Delay discount exponential model param0.50.50.7-0.40.80.8
Extinction: sum of active levers before priming1.51.54.4-2.1-0.40.1
Active lever presses in extinction session 60.50.50.6-0.6-0.8-0.6
Bone: final force0.61.03.01.70.1-0.0
Bone: final moment0.60.92.81.70.10.0
Food consumed during 24 hour testing period0.10.10.30.50.20.1
Glucose0.10.10.20.2-0.1-0.5
Heart weight2.33.33.41.81.71.8
Delay discount hyperbolic model param0.40.40.5-0.50.70.7
Intermittent access intake day 1-15 change0.20.20.20.4-0.3-0.5
Intermittent access intake escalation0.40.40.70.9-0.4-0.6
Intermittent access intake escalation 20.00.00.00.1-0.1-0.1
Intermitt. access day 1 inactive lever presses0.10.10.20.2-0.4-0.3
Intermitt. access day 15 inactive lever presses0.50.61.10.1-0.8-1.0
Intermitt. access escalation Index4.33.84.11.92.02.0
Intermittent access day 1 total infusions2.02.36.22.50.80.4
Intermittent access day 15 total infusions1.61.75.22.30.2-0.2
Intermittent access terminal intake (last 3 days)1.21.33.92.00.2-0.2
Intermittent access total infusions1.11.23.51.90.1-0.2
Intermittent access day 1 locomotion0.80.91.81.30.70.5
Intermittent access day 15 total locomotion0.80.91.11.0-0.7-1.1
Intermittent access total locomotion0.40.50.80.5-0.6-0.9
Intermittent access standard deviation1.01.01.3-0.7-1.1-1.1
Left kidney weight0.82.24.7-2.2-1.3-0.7
Right kidney weight0.92.54.0-2.0-1.6-1.0
Cocaine induced anxiety0.60.70.80.90.90.8
Post-drug Anxiety0.40.41.11.10.30.1
Baseline Anxiety0.30.30.4-0.4-0.6-0.6
Tail length2.47.18.6-2.5-2.9-2.6
Length with tail1.34.97.6-2.8-2.1-1.6
Length without tail0.30.61.8-1.3-0.30.1
Times rat made contact with spout1.71.93.4-1.80.91.3
Lifetime Intake1.21.33.82.0-0.1-0.4
Liver weight, left0.30.51.0-1.00.20.6
Liver weight, right1.52.57.02.7-0.5-0.5
Locomotor activity0.40.71.31.1-0.4-0.7
Locomotor testing distance0.50.82.01.40.60.2
Locomotor testing rearing1.52.32.71.31.61.6
Locomotion in novel chamber0.91.22.2-1.5-0.8-0.8
Locomotion in novel chamber post-restriction0.91.11.7-0.31.21.3
Fecal boli incidents, locomotor time 10.10.10.2-0.5-0.10.0
Change in fecal boli incidents, locomotor task0.10.10.20.4-0.3-0.4
Time >=10cm from walls, locomotor time 10.40.40.80.90.60.3
Bouts of movement, locomotor time 10.40.40.6-0.4-0.8-0.7
Total resting periods, locomotor time 10.20.30.3-0.6-0.6-0.4
Rest time, locomotor task time 10.40.41.1-1.00.20.3
Distance moved, locomotor task time 10.00.00.0-0.0-0.1-0.1
Vertical activity count, locomotor time 10.00.00.10.10.30.2
Time >=10cm from walls, locomotor time 21.81.92.61.11.61.4
Bouts of movement, locomotor time 20.80.91.50.2-1.0-1.2
Total resting periods, locomotor time 20.80.81.50.3-1.0-1.2
Rest time, locomotor task time 20.00.00.1-0.30.10.1
Distance moved, locomotor task time 20.40.50.60.30.80.8
Vertical activity count, locomotor time 21.01.11.70.51.21.3
Light reinforcement 10.00.00.00.10.10.2
Light reinforcement 21.21.62.70.3-1.4-1.6
Bone: marrow area0.00.10.2-0.1-0.3-0.4
Bone: maximum diameter0.91.74.62.10.60.3
Bone: maximum force0.81.43.81.90.50.4
Bone: maximum moment0.81.33.51.90.50.4
Mean time between licks in bursts0.30.40.8-0.90.50.2
Mean num. licks in bursts2.32.85.40.32.31.7
Cd content in liver0.30.41.01.00.1-0.3
Co content in liver0.80.91.71.30.60.8
Cu content in liver7.89.421.34.62.11.5
Fe content in liver0.30.30.90.90.1-0.2
K content in liver0.30.30.80.90.10.2
Mg content in liver1.71.85.12.30.5-0.0
Mn content in liver0.60.61.11.0-0.6-0.7
Na content in liver0.90.92.71.70.2-0.1
Rb content in liver2.32.84.00.82.01.9
Se content in liver0.70.91.60.6-0.9-1.3
Sr content in liver2.01.84.3-2.10.50.9
Zn content in liver1.92.16.12.50.2-0.4
Bone: minimum diameter0.30.61.51.2-0.2-0.4
Time in familiar zone, hab. session 10.30.30.4-0.5-0.6-0.6
Time in novel zone, hab. session 10.10.10.20.50.20.3
Total zone transitions, hab. session 13.65.114.93.90.1-0.5
Total locomotion distance, hab. session 15.68.022.74.81.10.3
Locomotion velocity, hab. session 16.08.524.34.91.00.2
Time in familiar zone, hab. session 20.60.61.0-0.2-1.0-0.9
Time in novel zone, hab. session 20.70.70.7-0.80.80.8
Total zone transitions, hab. session 25.16.519.14.40.1-0.7
Total locomotion distance, hab. session 210.313.639.96.31.0-0.2
Locomotion velocity, hab. session 210.614.242.06.50.7-0.4
Novel to familiar place preference ratio1.71.74.22.01.00.3
Novelty place preference1.41.53.41.90.90.4
Time in novel zone, NPP test1.11.12.31.51.00.4
Total zone transitions, NPP test1.62.36.52.5-0.2-0.5
Total locomotion distance, NPP test2.43.29.53.10.1-0.4
Locomotion velocity, NPP test2.33.39.73.10.1-0.5
Intraocular pressure0.50.81.20.21.11.0
Delta distance traveled before/after self-admin4.65.06.11.72.52.4
Delta ambulatory time before/after self-admin4.04.46.01.22.42.5
Parametrial fat weight0.30.71.9-1.4-0.30.0
Pavlov. Cond. lever latency1.01.21.6-1.3-1.1-0.9
Pavlov. Cond. magazine entry latency2.73.45.2-0.22.22.3
Pavlov. Cond. change in total contacts2.52.73.80.81.91.9
Pavlov. Cond. index score1.72.13.20.11.81.8
Pavlov. Cond. latency score1.62.03.00.71.71.6
Pavlov. Cond. lever contacts1.51.82.11.31.41.2
Pavlov. Cond. magazine entry number2.32.84.50.3-2.0-2.1
Pavlov. Cond. intertrial magazine entries0.30.40.9-1.0-0.3-0.2
Pavlov. Cond. lever-magazine prob. diff.1.21.52.2-0.51.41.5
Pavlov. Cond. response bias2.42.94.2-0.42.02.1
Pavlov. Cond. lever latency0.30.40.5-0.5-0.7-0.6
Pavlov. Cond. magazine entry latency1.11.23.41.80.50.1
Pavlov. Cond. change in total contacts0.71.02.61.60.50.2
Pavlov. Cond. index score0.40.51.31.10.50.3
Pavlov. Cond. latency score0.50.61.61.30.40.2
Pavlov. Cond. lever contacts0.40.60.60.80.80.7
Pavlov. Cond. magazine entry number2.83.47.3-2.7-1.4-1.0
Pavlov. Cond. intertrial magazine entries0.40.51.0-1.0-0.7-0.3
Pavlov. Cond. lever-magazine prob. diff.0.40.51.11.00.50.3
Pavlov. Cond. response bias0.71.01.20.91.10.9
Time in closed arm before self-admin0.50.60.70.70.80.8
Time in closed arm after self-admin1.31.32.00.2-1.4-1.4
Time in open arm before self-admin1.31.42.2-0.2-1.4-1.5
Time in open arm after self-admin1.51.62.50.21.51.6
Bone: periosteal estimation0.10.10.20.5-0.3-0.4
Bone: periosteal perimeter1.52.57.32.7-0.1-0.5
Bone: post-yield work8.711.825.15.02.62.0
Progressive ratio test 1 active lever presses1.61.75.02.20.2-0.0
Progressive ratio test 1 breakpoint1.81.95.52.40.40.1
Progressive ratio test 1 inactive lever presses0.20.30.40.4-0.5-0.6
Progressive ratio test 2 active lever presses0.80.82.21.5-0.2-0.4
Progressive ratio test 2 breakpoint0.80.92.81.70.2-0.0
Progressive ratio test 2 inactive lever presses1.01.22.21.5-0.6-1.0
Incentive Sensitization - Responses0.80.92.11.5-0.4-0.5
Incentive Sensitization - Breakpoint0.70.71.71.3-0.4-0.5
Sum of active levers in priming session hrs 5-60.40.41.1-1.1-0.20.1
Progressive ratio0.20.20.40.40.60.3
Food seeking constrained by brief footshock0.30.41.1-1.0-0.3-0.3
Seeking ratio, punishment vs. effort0.60.81.5-1.2-0.7-0.5
Retroperitoneal fat weight0.20.81.6-0.20.91.2
Reaction time number correct0.30.41.1-1.1-0.10.3
Reaction time mean minus median6.58.619.74.41.91.5
Reaction time mean minus median AUC7.39.517.04.12.62.2
Reaction time num false alarms1.72.33.8-0.51.72.0
Reaction time num false alarms AUC1.92.74.4-0.21.92.1
Reaction time trials correct on left0.30.41.1-1.1-0.10.3
Reaction time trials on left0.20.30.9-0.9-0.00.3
Reaction time mean5.88.122.14.71.30.7
Reaction time mean AUC7.610.227.85.31.50.7
Median of all reaction times3.44.713.53.70.70.1
Reaction time omissions4.86.512.23.52.11.7
Reaction time false alarm rate1.01.42.20.21.51.4
Reaction time premature initiation rate3.85.15.6-2.3-2.4-2.1
Reaction time premature initiations3.24.56.3-2.5-2.1-1.7
Std. dev. reaction times7.911.127.75.31.91.3
Reaction time trials completed0.20.30.9-0.9-0.00.3
Reaction time trials AUC0.20.20.6-0.8-0.00.3
Run reversals in cocaine runway, females0.90.81.2-0.4-1.1-1.1
Run reversals in cocaine runway, males1.31.21.6-1.01.01.3
Latency to leave start box in cocaine runway0.00.00.1-0.2-0.1-0.1
Latency to leave start box in cocaine runway, F0.20.30.40.30.70.6
Latency to leave start box in cocaine runway, M0.80.81.20.3-1.1-1.1
Std. dev. time between licks in bursts0.00.10.1-0.30.2-0.3
Total sessions with >9 infusions0.91.02.91.70.1-0.1
Short access day 1 total inactive lever presses0.60.71.1-0.2-1.0-1.0
Short access day 10 total inactive lever presses1.31.51.8-0.9-1.3-1.3
Short access day 1 total infusions1.61.74.72.2-0.2-0.4
Short access day 10 total infusions1.31.43.11.7-0.6-0.9
Short access total infusions1.11.23.21.8-0.3-0.6
Short access day 1 locomotion0.40.40.80.90.50.3
Short access day 10 total locomotion0.50.50.8-0.2-0.8-0.9
Short access total locomotion0.60.61.01.00.70.6
One hour access (0.3 mA shock)0.50.60.60.80.80.8
Compulsive drug intake0.50.50.9-0.90.40.7
One hour access (shock baseline)0.30.31.01.0-0.0-0.2
Social response proportion1.31.42.41.61.00.9
Social responses1.21.51.61.11.31.3
Social time0.10.20.3-0.00.50.5
Soleus weight0.20.71.0-0.2-1.0-1.0
Bone: stiffness3.25.012.53.51.31.0
Tibialis anterior weight1.03.35.2-1.0-1.9-2.3
Time to tail flick, vehicle, before self-admin1.41.43.0-1.7-0.8-0.8
Time to tail flick, vehicle, after self-admin4.54.86.8-1.2-2.5-2.6
Time to tail flick, test, before self-admin2.72.73.61.11.91.8
Time to tail flick, test, after self-admin0.30.40.50.6-0.5-0.7
Delta time to tail flick, vehicle, before/after SA0.90.91.30.3-1.1-1.2
Delta time to tail flick, test, before/after SA1.91.72.4-0.6-1.5-1.5
Tibia length0.61.83.5-1.9-1.2-0.6
Ambulatory time before self-admin1.31.31.9-0.4-1.4-1.4
Ambulatory time after self-admin0.00.10.1-0.40.10.1
Bone: tissue strength0.20.20.3-0.50.20.5
Total heroin consumption0.10.10.2-0.2-0.4-0.2
Bone: trabecular number1.82.84.0-1.1-1.8-2.0
Bone: trabecular spacing0.10.20.20.40.50.2
Bone: trabecular thickness0.20.20.6-0.7-0.2-0.1
Bone: trabecular tissue density1.42.05.22.30.60.7
Water consumed over 24 hours0.50.61.40.30.41.2
Number of responses in last shaping day2.93.04.2-1.1-1.9-2.1