Hipk3

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Adipose gene expression Hipk3 0.02 0.02 1.4e-03 0.01 0.02 0.01 0.01 1.1e-02 6.5e-03 1.0e-02 1.5e-02
2 Brain mRNA stability Hipk3 0.03 0.03 1.1e-03 0.02 0.02 0.02 -0 4.4e-03 5.4e-03 5.7e-03 4.8e-01
3 pVTA alternative TSS NM_031787.2 0.05 0.04 7.2e-03 0.04 0.02 0.02 0.03 1.2e-02 4.7e-02 5.2e-02 2.1e-02
4 pVTA alternative TSS NM_031787.2 0.05 0.04 4.9e-03 0.04 0.03 0.03 0.03 7.2e-03 2.5e-02 1.5e-02 1.5e-02

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density0.30.50.7-0.8-0.80.60.6
Area under the delay curve0.50.50.70.80.8-0.7-0.7
BMI with tail0.10.30.4-0.6-0.60.50.5
BMI without tail0.30.70.9-0.9-0.80.80.8
Body weight0.83.63.9-2.0-1.91.81.8
Weight adjusted by age0.81.01.11.10.9-1.0-1.0
Bone surface0.20.30.4-0.6-0.60.50.5
Bone volume0.50.91.1-1.1-0.90.90.9
Breakpoint value in progressive ratio session0.10.20.40.60.2-0.3-0.3
Number of licking bursts0.00.00.1-0.30.10.10.1
Context. condit. distance diff. score4.65.66.0-2.4-2.32.32.3
Locomotion velocity, session 10.40.40.80.70.9-0.5-0.5
Locomotion distance, session 10.30.40.50.50.5-0.7-0.7
Locomotion velocity, session 20.10.10.10.10.0-0.3-0.3
Locomotion distance, session 20.10.10.4-0.4-0.60.20.2
Locomotion velocity, session 30.50.60.80.50.7-0.9-0.9
Locomotion distance, session 30.00.00.00.0-0.1-0.2-0.2
Stereotopy head waving bouts, day 30.80.91.60.81.3-0.8-0.8
Stereotopy head waving duration, day 30.10.20.2-0.4-0.10.50.5
Locomotion velocity, session 70.30.30.6-0.5-0.80.50.5
Locomotion distance, session 70.00.10.20.1-0.4-0.1-0.1
Stereotopy head waving bouts, day 70.30.40.70.50.8-0.6-0.6
Stereotopy head waving duration, day 70.20.30.50.40.7-0.4-0.4
Locomotion velocity, session 80.70.80.9-0.9-0.90.90.9
Locomotion distance, session 83.34.95.5-2.3-2.32.12.1
Degree of sensitization distance0.50.50.6-0.4-0.80.70.7
Degree of sensitization stereotypy0.70.71.10.81.0-0.8-0.8
Conditioned locomotion6.88.010.22.83.2-2.6-2.6
Cocaine response after cond. corrected3.03.43.71.91.8-1.8-1.8
Cocaine response after cond. not corrected0.50.60.70.80.7-0.7-0.7
Cocaine response before conditioning6.37.67.9-2.8-2.82.72.7
Saline control response0.10.10.2-0.3-0.20.50.5
Bone: connectivity density0.40.60.8-0.9-0.90.70.7
Bone: cortical apparent density0.10.20.2-0.3-0.40.40.4
Bone: cortical area0.91.41.5-1.2-1.11.21.2
Bone: cortical porosity0.60.60.70.80.6-0.8-0.8
Bone: cortical porosity0.10.10.10.30.1-0.4-0.4
Bone: cortical thickness0.20.40.4-0.6-0.50.60.6
Bone: cortical thickness1.92.22.31.41.4-1.5-1.5
Bone: cortical tissue density0.10.20.2-0.3-0.40.50.5
Condit. Reinf. active minus inactive responses1.31.52.2-1.3-1.51.01.0
Condit. Reinf. active-inactive response ratio3.84.15.0-2.2-2.21.81.8
Condit. Reinf. active responses0.30.40.8-0.6-0.90.40.4
Condit. Reinf. inactive responses0.80.91.11.00.9-0.9-0.9
Incentive salience index mean1.31.52.1-1.3-1.51.11.1
Condit. Reinf. lever presses1.01.31.5-1.1-1.21.11.1
Condit. Reinf. active minus inactive responses2.32.83.0-1.7-1.71.71.7
Condit. Reinf. active-inactive response ratio6.16.36.5-2.6-2.52.52.5
Condit. Reinf. active responses1.11.51.7-1.3-1.31.11.1
Condit. Reinf. inactive responses0.30.30.40.50.5-0.7-0.7
Condit. Reinf. lever presses1.21.61.8-1.3-1.31.21.2
Condit. Reinf. lever reinforcers received1.01.41.6-1.3-1.21.11.1
Conditioned reinforcement - actives5.65.65.8-2.4-2.22.42.4
Conditioned reinforcement - inactives8.89.910.9-3.3-3.03.13.1
Conditioned locomotion1.41.71.9-1.4-1.21.31.3
Patch foraging indifference point 0 sec1.72.83.21.41.8-1.7-1.7
Patch foraging indifference point AUC0.60.70.80.90.8-0.8-0.8
Delay disc. indifference point, 0s delay0.10.10.4-0.2-0.60.30.3
Delay disc. indifference point, 16s delay1.21.21.61.11.3-1.0-1.0
Delay disc. indifference point, 2s delay0.00.00.10.10.1-0.3-0.3
Delay disc. indifference point, 24s delay0.70.71.60.81.3-0.5-0.5
Delay disc. indifference point, 4s delay0.30.40.50.60.4-0.7-0.7
Delay disc. indifference point, 8s delay0.00.00.10.00.00.20.2
Indifference point function ln k0.70.91.2-1.0-1.10.90.9
Indifference point function log k0.70.91.2-1.0-1.10.90.9
Patch foraging total patch changes 0 sec1.72.73.01.41.7-1.7-1.7
Patch foraging total patch changes 12 sec0.00.00.0-0.10.10.00.0
Patch foraging total patch changes 18 sec1.01.31.41.01.2-1.1-1.1
Patch foraging total patch changes 24 sec2.12.62.81.41.7-1.6-1.6
Patch foraging total patch changes 6 sec1.01.51.71.11.2-1.3-1.3
Patch foraging time to switch 0 sec0.00.00.0-0.1-0.2-0.1-0.1
Patch foraging water rate 0 sec0.00.00.10.20.1-0.0-0.0
Patch foraging water rate 12 sec0.00.00.1-0.1-0.30.10.1
Patch foraging water rate 18 sec0.50.71.0-1.0-0.80.80.8
Patch foraging water rate 24 sec0.50.71.0-0.7-0.71.01.0
Patch foraging water rate 6 sec0.00.00.00.0-0.20.20.2
Seeking ratio, delayed vs. immediate footshock0.50.60.7-0.7-0.60.80.8
Distance traveled before self-admin0.80.80.9-0.9-0.81.01.0
Distance traveled after self-admin1.82.02.7-1.4-1.61.31.3
Extensor digitorum longus weight0.20.70.90.80.5-1.0-1.0
Bone: elastic displacement0.50.50.60.70.5-0.8-0.8
Bone: elastic work0.30.40.50.50.5-0.7-0.7
Bone: endosteal estimation0.20.40.40.60.7-0.6-0.6
Bone: endosteal perimeter0.20.40.5-0.6-0.40.70.7
Epididymis fat weight0.81.92.3-1.5-1.51.21.2
Delta time in closed arm before/after self-admin0.00.00.00.00.1-0.0-0.0
Delta time in open arm before/after self-admin1.51.51.71.21.3-1.2-1.2
Diff in mean of infusions in LGA sessions0.00.00.1-0.3-0.20.10.1
Delay discount exponential model param0.70.80.9-0.9-1.00.80.8
Extinction: sum of active levers before priming0.90.91.0-0.7-1.01.01.0
Active lever presses in extinction session 60.70.71.1-0.7-1.00.80.8
Bone: final force0.40.60.7-0.7-0.70.90.9
Bone: final moment0.20.30.3-0.4-0.60.60.6
Food consumed during 24 hour testing period7.38.99.1-2.9-2.93.03.0
Glucose2.84.34.6-2.0-2.02.12.1
Heart weight0.00.00.10.20.40.00.0
Delay discount hyperbolic model param0.50.50.6-0.7-0.80.70.7
Intermittent access intake day 1-15 change0.10.10.2-0.4-0.40.30.3
Intermittent access intake escalation0.30.30.3-0.6-0.50.50.5
Intermittent access intake escalation 22.02.02.1-1.4-1.41.41.4
Intermitt. access day 1 inactive lever presses2.42.64.1-1.4-2.01.51.5
Intermitt. access day 15 inactive lever presses4.75.25.9-2.2-2.42.22.2
Intermitt. access escalation Index0.00.00.1-0.20.00.20.2
Intermittent access day 1 total infusions1.92.12.4-1.5-1.21.51.5
Intermittent access day 15 total infusions2.93.33.6-1.9-1.51.91.9
Intermittent access terminal intake (last 3 days)3.74.04.6-2.1-1.52.22.2
Intermittent access total infusions3.84.34.8-2.2-1.72.22.2
Intermittent access day 1 locomotion0.60.60.7-0.8-0.80.80.8
Intermittent access day 15 total locomotion0.00.00.0-0.20.10.10.1
Intermittent access total locomotion0.50.50.7-0.8-0.80.60.6
Intermittent access standard deviation3.43.64.0-2.0-1.62.02.0
Left kidney weight1.33.73.9-2.0-1.82.02.0
Right kidney weight0.92.52.6-1.6-1.61.61.6
Cocaine induced anxiety1.82.02.2-1.5-1.41.41.4
Post-drug Anxiety0.20.20.3-0.4-0.60.30.3
Baseline Anxiety5.55.86.42.42.2-2.5-2.5
Tail length0.82.32.4-1.5-1.51.51.5
Length with tail0.82.83.0-1.7-1.61.71.7
Length without tail0.41.01.1-1.0-1.00.90.9
Times rat made contact with spout0.10.10.3-0.4-0.60.20.2
Lifetime Intake4.44.95.7-2.3-1.82.42.4
Liver weight, left1.62.53.7-1.5-1.91.41.4
Liver weight, right3.66.16.2-2.4-2.52.52.5
Locomotor activity0.00.00.10.10.2-0.3-0.3
Locomotor testing distance1.11.82.3-1.5-1.51.11.1
Locomotor testing rearing0.40.60.7-0.8-0.60.80.8
Locomotion in novel chamber0.10.10.3-0.2-0.50.20.2
Locomotion in novel chamber post-restriction1.01.21.41.20.9-1.2-1.2
Fecal boli incidents, locomotor time 14.14.54.92.22.2-2.1-2.1
Change in fecal boli incidents, locomotor task1.41.31.4-1.2-1.11.11.1
Time >=10cm from walls, locomotor time 10.10.10.20.10.40.20.2
Bouts of movement, locomotor time 10.00.00.00.1-0.2-0.0-0.0
Total resting periods, locomotor time 10.00.00.00.0-0.10.10.1
Rest time, locomotor task time 10.10.20.50.30.70.20.2
Distance moved, locomotor task time 11.71.92.8-1.4-1.71.21.2
Vertical activity count, locomotor time 10.10.10.3-0.2-0.50.00.0
Time >=10cm from walls, locomotor time 25.86.16.8-2.5-2.22.62.6
Bouts of movement, locomotor time 20.50.61.4-0.6-1.20.50.5
Total resting periods, locomotor time 20.50.61.5-0.6-1.20.40.4
Rest time, locomotor task time 22.63.04.31.72.1-1.6-1.6
Distance moved, locomotor task time 26.27.28.9-2.5-3.02.62.6
Vertical activity count, locomotor time 24.24.65.3-2.0-2.32.12.1
Light reinforcement 10.40.61.0-0.7-0.31.01.0
Light reinforcement 20.10.20.3-0.4-0.20.50.5
Bone: marrow area0.20.40.40.70.7-0.6-0.6
Bone: maximum diameter0.61.11.3-1.0-1.01.11.1
Bone: maximum force0.10.10.2-0.4-0.30.40.4
Bone: maximum moment0.00.00.0-0.1-0.0-0.0-0.0
Mean time between licks in bursts1.31.92.01.31.4-1.4-1.4
Mean num. licks in bursts0.10.10.3-0.1-0.60.20.2
Cd content in liver0.70.70.9-0.8-0.70.90.9
Co content in liver1.82.12.31.41.3-1.5-1.5
Cu content in liver0.20.20.40.60.4-0.5-0.5
Fe content in liver0.20.30.40.50.2-0.6-0.6
K content in liver1.91.92.21.31.1-1.5-1.5
Mg content in liver1.01.01.21.00.7-1.1-1.1
Mn content in liver0.81.01.21.11.0-0.9-0.9
Na content in liver0.10.10.3-0.4-0.60.20.2
Rb content in liver0.81.01.31.00.7-1.1-1.1
Se content in liver4.65.65.92.42.3-2.4-2.4
Sr content in liver0.00.00.00.1-0.1-0.1-0.1
Zn content in liver0.10.10.20.50.4-0.2-0.2
Bone: minimum diameter1.22.22.5-1.5-1.61.41.4
Time in familiar zone, hab. session 10.70.60.70.80.8-0.8-0.8
Time in novel zone, hab. session 11.21.21.3-1.1-1.01.11.1
Total zone transitions, hab. session 10.81.11.4-1.2-1.10.90.9
Total locomotion distance, hab. session 10.10.20.20.20.4-0.5-0.5
Locomotion velocity, hab. session 10.30.40.50.40.5-0.7-0.7
Time in familiar zone, hab. session 20.30.30.40.60.6-0.5-0.5
Time in novel zone, hab. session 20.80.80.9-0.9-0.81.01.0
Total zone transitions, hab. session 20.91.21.3-1.1-1.01.11.1
Total locomotion distance, hab. session 20.40.60.90.71.0-0.7-0.7
Locomotion velocity, hab. session 20.50.71.00.81.0-0.8-0.8
Novel to familiar place preference ratio1.01.01.3-1.1-1.10.90.9
Novelty place preference1.21.31.6-1.2-1.21.01.0
Time in novel zone, NPP test1.11.11.4-1.2-1.21.01.0
Total zone transitions, NPP test1.52.22.21.41.4-1.5-1.5
Total locomotion distance, NPP test2.33.13.51.81.9-1.7-1.7
Locomotion velocity, NPP test2.13.03.11.71.8-1.7-1.7
Intraocular pressure0.30.40.70.50.9-0.6-0.6
Delta distance traveled before/after self-admin0.00.00.1-0.2-0.30.00.0
Delta ambulatory time before/after self-admin0.20.20.5-0.5-0.70.40.4
Parametrial fat weight0.61.11.3-0.9-0.91.21.2
Pavlov. Cond. lever latency0.30.30.40.70.7-0.5-0.5
Pavlov. Cond. magazine entry latency1.72.12.3-1.5-1.31.51.5
Pavlov. Cond. change in total contacts0.10.10.20.30.4-0.4-0.4
Pavlov. Cond. index score0.30.40.5-0.7-0.70.50.5
Pavlov. Cond. latency score0.30.40.5-0.7-0.70.60.6
Pavlov. Cond. lever contacts0.40.50.7-0.7-0.80.60.6
Pavlov. Cond. magazine entry number1.62.02.21.51.4-1.4-1.4
Pavlov. Cond. intertrial magazine entries0.10.10.20.3-0.2-0.5-0.5
Pavlov. Cond. lever-magazine prob. diff.0.20.20.3-0.5-0.50.40.4
Pavlov. Cond. response bias1.41.71.9-1.3-1.41.31.3
Pavlov. Cond. lever latency2.53.43.51.81.8-1.9-1.9
Pavlov. Cond. magazine entry latency0.70.80.9-1.0-0.80.90.9
Pavlov. Cond. change in total contacts0.91.31.5-1.0-1.01.21.2
Pavlov. Cond. index score1.92.42.4-1.5-1.61.51.5
Pavlov. Cond. latency score1.92.32.4-1.5-1.51.51.5
Pavlov. Cond. lever contacts2.73.64.0-1.9-2.01.91.9
Pavlov. Cond. magazine entry number0.50.60.60.80.7-0.7-0.7
Pavlov. Cond. intertrial magazine entries0.00.10.2-0.1-0.40.00.0
Pavlov. Cond. lever-magazine prob. diff.1.82.22.3-1.5-1.51.51.5
Pavlov. Cond. response bias2.63.63.8-1.9-2.01.91.9
Time in closed arm before self-admin3.64.15.7-2.1-2.41.81.8
Time in closed arm after self-admin1.41.41.7-1.3-1.21.11.1
Time in open arm before self-admin2.83.03.51.81.9-1.7-1.7
Time in open arm after self-admin6.67.28.12.72.9-2.6-2.6
Bone: periosteal estimation0.00.00.1-0.2-0.10.30.3
Bone: periosteal perimeter1.01.61.9-1.2-1.11.41.4
Bone: post-yield work0.20.30.50.40.7-0.4-0.4
Progressive ratio test 1 active lever presses2.72.83.2-1.8-1.41.81.8
Progressive ratio test 1 breakpoint2.72.83.4-1.8-1.21.81.8
Progressive ratio test 1 inactive lever presses2.93.23.4-1.8-1.71.81.8
Progressive ratio test 2 active lever presses2.42.52.9-1.7-1.21.71.7
Progressive ratio test 2 breakpoint3.03.43.7-1.9-1.51.91.9
Progressive ratio test 2 inactive lever presses4.95.66.0-2.3-2.32.42.4
Incentive Sensitization - Responses1.81.81.9-1.2-1.41.41.4
Incentive Sensitization - Breakpoint1.41.41.5-1.1-1.21.21.2
Sum of active levers in priming session hrs 5-60.00.00.10.2-0.30.10.1
Progressive ratio0.60.70.9-0.8-0.90.80.8
Food seeking constrained by brief footshock0.50.60.6-0.8-0.70.80.8
Seeking ratio, punishment vs. effort0.81.01.40.91.2-1.0-1.0
Retroperitoneal fat weight9.330.533.2-5.8-5.65.45.4
Reaction time number correct0.00.10.1-0.00.10.40.4
Reaction time mean minus median0.00.10.1-0.3-0.20.20.2
Reaction time mean minus median AUC0.10.10.2-0.3-0.30.40.4
Reaction time num false alarms2.63.64.21.72.0-1.9-1.9
Reaction time num false alarms AUC2.94.04.61.92.1-2.0-2.0
Reaction time trials correct on left0.00.10.1-0.00.10.40.4
Reaction time trials on left0.00.00.10.10.20.30.3
Reaction time mean0.60.81.4-0.9-1.20.80.8
Reaction time mean AUC1.01.42.1-1.1-1.41.01.0
Median of all reaction times1.11.62.3-1.2-1.51.11.1
Reaction time omissions0.81.11.40.91.2-1.0-1.0
Reaction time false alarm rate3.85.35.82.12.3-2.4-2.4
Reaction time premature initiation rate0.10.10.10.10.4-0.3-0.3
Reaction time premature initiations0.00.00.10.10.4-0.0-0.0
Std. dev. reaction times0.10.10.2-0.3-0.40.20.2
Reaction time trials completed0.00.00.10.10.20.30.3
Reaction time trials AUC0.10.10.2-0.1-0.10.50.5
Run reversals in cocaine runway, females1.31.21.9-1.1-1.40.90.9
Run reversals in cocaine runway, males1.71.72.31.30.6-1.5-1.5
Latency to leave start box in cocaine runway0.50.50.50.70.7-0.7-0.7
Latency to leave start box in cocaine runway, F0.40.40.50.70.6-0.7-0.7
Latency to leave start box in cocaine runway, M0.00.00.00.10.1-0.1-0.1
Std. dev. time between licks in bursts0.00.00.0-0.00.2-0.1-0.1
Total sessions with >9 infusions2.52.72.9-1.6-1.61.71.7
Short access day 1 total inactive lever presses0.70.81.0-0.7-0.81.01.0
Short access day 10 total inactive lever presses1.51.72.4-1.2-1.51.21.2
Short access day 1 total infusions7.88.39.5-2.9-2.53.13.1
Short access day 10 total infusions1.11.21.5-1.2-0.81.21.2
Short access total infusions3.74.14.9-2.0-1.72.22.2
Short access day 1 locomotion0.70.70.9-1.0-0.60.90.9
Short access day 10 total locomotion1.31.51.6-1.3-1.21.21.2
Short access total locomotion1.01.01.2-1.1-0.91.01.0
One hour access (0.3 mA shock)2.32.73.1-1.8-1.71.61.6
Compulsive drug intake1.31.31.41.21.0-1.2-1.2
One hour access (shock baseline)4.04.65.4-2.3-2.02.12.1
Social response proportion1.81.92.71.61.5-1.2-1.2
Social responses0.20.20.4-0.3-0.10.60.6
Social time2.93.84.72.22.0-1.8-1.8
Soleus weight1.13.23.71.81.5-1.9-1.9
Bone: stiffness0.61.01.1-1.0-0.81.11.1
Tibialis anterior weight1.75.96.22.52.3-2.5-2.5
Time to tail flick, vehicle, before self-admin0.70.81.1-0.9-1.10.70.7
Time to tail flick, vehicle, after self-admin1.92.03.0-1.7-1.41.31.3
Time to tail flick, test, before self-admin0.50.50.6-0.8-0.80.60.6
Time to tail flick, test, after self-admin1.01.01.2-1.0-0.91.11.1
Delta time to tail flick, vehicle, before/after SA0.20.20.4-0.6-0.30.30.3
Delta time to tail flick, test, before/after SA0.20.10.30.40.6-0.2-0.2
Tibia length0.00.10.3-0.3-0.50.20.2
Ambulatory time before self-admin0.80.80.9-0.8-1.00.90.9
Ambulatory time after self-admin2.93.24.1-1.8-2.01.61.6
Bone: tissue strength0.50.50.70.70.8-0.6-0.6
Total heroin consumption0.20.30.40.60.5-0.5-0.5
Bone: trabecular number0.40.60.7-0.8-0.80.70.7
Bone: trabecular spacing0.10.10.2-0.3-0.10.40.4
Bone: trabecular thickness0.30.40.6-0.6-0.80.50.5
Bone: trabecular tissue density0.91.31.61.10.7-1.3-1.3
Water consumed over 24 hours0.50.60.6-0.8-0.80.80.8
Number of responses in last shaping day2.62.72.9-1.7-1.51.71.7