Hipk3

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Adipose gene expression Hipk3 0.03 0.03 1.2e-04 0.02 0.02 0.02 0.02 1.9e-03 9.3e-04 2.9e-03 2.5e-03
2 pVTA mRNA stability Hipk3 0.06 0.05 4.2e-05 0.06 0.05 0.05 0.05 2.4e-05 7.0e-05 5.9e-05 3.9e-05
3 PL gene expression Hipk3 0.05 0.04 1.9e-03 0.03 0.02 0.02 0.02 9.2e-04 1.5e-03 2.1e-03 1.2e-03
4 OFC alternative TSS XM_008762072.4 0.14 0.12 6.1e-03 0.05 0.04 0.02 0.05 2.8e-02 4.3e-02 8.9e-02 2.3e-02

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density0.20.40.6-0.80.60.60.6
Area under the delay curve0.30.30.40.5-0.5-0.6-0.6
BMI with tail0.10.20.30.40.2-0.5-0.5
BMI without tail0.30.91.0-0.91.01.00.9
Body weight0.73.04.2-1.72.01.61.5
Weight adjusted by age1.62.42.91.3-1.6-1.7-1.6
Bone surface0.10.20.3-0.60.30.40.3
Bone volume0.40.71.0-1.00.70.90.7
Breakpoint value in progressive ratio session0.30.40.70.8-0.3-0.8-0.4
Number of licking bursts0.00.10.1-0.3-0.30.20.1
Context. condit. distance diff. score4.95.96.7-2.42.62.42.3
Locomotion velocity, session 10.60.71.50.7-1.2-0.3-0.8
Locomotion distance, session 10.40.50.90.5-0.9-0.6-0.5
Locomotion velocity, session 20.00.00.10.1-0.3-0.20.1
Locomotion distance, session 20.10.10.2-0.3-0.10.30.5
Locomotion velocity, session 30.40.50.90.5-0.5-0.8-0.9
Locomotion distance, session 30.00.00.10.0-0.4-0.2-0.1
Stereotopy head waving bouts, day 30.91.01.90.8-0.9-0.8-1.4
Stereotopy head waving duration, day 30.10.10.1-0.40.30.4-0.0
Locomotion velocity, session 70.30.30.8-0.50.40.50.9
Locomotion distance, session 70.00.00.20.1-0.1-0.20.4
Stereotopy head waving bouts, day 70.40.50.90.5-0.6-0.7-0.9
Stereotopy head waving duration, day 70.20.30.40.4-0.5-0.4-0.7
Locomotion velocity, session 80.60.71.0-0.80.81.00.7
Locomotion distance, session 83.14.44.9-2.21.92.12.2
Degree of sensitization distance0.40.40.7-0.30.70.70.8
Degree of sensitization stereotypy0.60.60.90.7-0.7-0.7-1.0
Conditioned locomotion7.28.310.62.8-2.7-2.7-3.3
Cocaine response after cond. corrected2.83.34.02.0-1.6-1.9-1.7
Cocaine response after cond. not corrected0.50.60.90.9-0.6-0.8-0.8
Cocaine response before conditioning5.97.07.7-2.82.42.82.6
Saline control response0.10.10.3-0.4-0.10.50.0
Bone: connectivity density0.20.40.6-0.70.50.50.6
Bone: cortical apparent density0.30.40.6-0.60.80.60.7
Bone: cortical area0.91.31.6-1.21.01.21.1
Bone: cortical porosity0.20.20.30.5-0.4-0.6-0.3
Bone: cortical porosity0.10.10.10.3-0.3-0.4-0.1
Bone: cortical thickness0.20.30.4-0.60.30.60.5
Bone: cortical thickness2.12.53.01.6-1.4-1.7-1.5
Bone: cortical tissue density0.30.40.6-0.50.80.60.7
Condit. Reinf. active minus inactive responses1.61.82.0-1.41.41.21.3
Condit. Reinf. active-inactive response ratio4.65.05.5-2.32.32.02.2
Condit. Reinf. active responses0.30.40.4-0.70.40.70.7
Condit. Reinf. inactive responses0.81.01.41.1-1.2-0.8-0.9
Incentive salience index mean1.41.71.9-1.41.31.41.3
Condit. Reinf. lever presses0.71.01.5-1.00.81.20.9
Condit. Reinf. active minus inactive responses1.92.52.6-1.61.61.51.6
Condit. Reinf. active-inactive response ratio5.36.26.4-2.52.52.42.5
Condit. Reinf. active responses0.91.31.6-1.11.31.01.1
Condit. Reinf. inactive responses0.40.50.70.6-0.5-0.8-0.8
Condit. Reinf. lever presses1.52.02.5-1.41.61.31.4
Condit. Reinf. lever reinforcers received0.81.11.3-1.11.11.01.0
Conditioned reinforcement - actives3.55.97.3-2.62.32.72.1
Conditioned reinforcement - inactives4.97.28.4-2.92.62.72.5
Conditioned locomotion0.91.21.5-1.21.21.00.9
Patch foraging indifference point 0 sec1.22.33.11.2-1.3-1.7-1.8
Patch foraging indifference point AUC0.40.60.80.9-0.7-0.8-0.8
Delay disc. indifference point, 0s delay0.10.20.3-0.30.50.30.5
Delay disc. indifference point, 16s delay1.11.21.41.0-1.2-1.2-1.1
Delay disc. indifference point, 2s delay0.10.10.10.1-0.1-0.3-0.3
Delay disc. indifference point, 24s delay0.70.81.20.8-1.1-0.7-1.0
Delay disc. indifference point, 4s delay0.30.30.40.6-0.4-0.6-0.6
Delay disc. indifference point, 8s delay0.00.00.0-0.10.10.10.0
Indifference point function ln k0.50.91.0-1.00.91.01.0
Indifference point function log k0.50.91.0-1.00.91.01.0
Patch foraging total patch changes 0 sec1.12.12.91.2-1.2-1.6-1.7
Patch foraging total patch changes 12 sec0.00.00.0-0.00.1-0.2-0.2
Patch foraging total patch changes 18 sec1.01.52.51.0-1.0-1.2-1.6
Patch foraging total patch changes 24 sec1.42.53.51.4-1.2-1.7-1.9
Patch foraging total patch changes 6 sec0.91.41.81.0-1.1-1.3-1.2
Patch foraging time to switch 0 sec0.00.00.1-0.20.3-0.10.2
Patch foraging water rate 0 sec0.00.00.10.2-0.0-0.3-0.2
Patch foraging water rate 12 sec0.00.00.10.00.30.10.0
Patch foraging water rate 18 sec0.50.81.5-1.00.61.20.8
Patch foraging water rate 24 sec0.30.40.9-0.60.01.00.5
Patch foraging water rate 6 sec0.00.00.20.1-0.4-0.0-0.0
Seeking ratio, delayed vs. immediate footshock0.50.61.0-0.61.00.50.7
Distance traveled before self-admin0.00.00.1-0.1-0.10.30.1
Distance traveled after self-admin0.50.60.7-0.80.70.80.6
Extensor digitorum longus weight0.20.81.00.8-1.0-1.0-0.7
Bone: elastic displacement0.30.30.50.7-0.3-0.7-0.4
Bone: elastic work0.20.30.40.5-0.1-0.7-0.6
Bone: endosteal estimation0.20.40.40.5-0.6-0.6-0.6
Bone: endosteal perimeter0.20.30.5-0.70.50.70.5
Epididymis fat weight1.24.14.7-2.12.21.72.1
Delta time in closed arm before/after self-admin0.30.30.60.5-0.6-0.2-0.8
Delta time in open arm before/after self-admin0.20.20.20.4-0.4-0.5-0.5
Diff in mean of infusions in LGA sessions0.20.30.40.6-0.3-0.6-0.6
Delay discount exponential model param0.40.40.6-0.60.60.70.8
Extinction: sum of active levers before priming0.00.10.10.10.30.20.3
Active lever presses in extinction session 60.20.20.5-0.30.70.10.4
Bone: final force0.30.50.6-0.80.70.80.7
Bone: final moment0.20.40.4-0.60.70.60.6
Food consumed during 24 hour testing period5.57.68.7-2.92.22.92.9
Glucose3.45.35.7-2.32.22.42.4
Heart weight0.30.50.50.7-0.7-0.7-0.7
Delay discount hyperbolic model param0.50.50.7-0.70.60.70.9
Intermittent access intake day 1-15 change0.30.50.7-0.80.80.60.6
Intermittent access intake escalation0.40.91.3-1.01.10.80.9
Intermittent access intake escalation 21.71.92.4-1.31.51.41.3
Intermitt. access day 1 inactive lever presses0.83.14.8-1.62.21.02.1
Intermitt. access day 15 inactive lever presses0.71.41.8-1.21.30.91.3
Intermitt. access escalation Index0.10.10.30.3-0.50.1-0.5
Intermittent access day 1 total infusions1.93.13.5-1.81.91.61.7
Intermittent access day 15 total infusions2.13.13.7-1.91.81.81.5
Intermittent access terminal intake (last 3 days)2.22.93.7-1.81.61.91.4
Intermittent access total infusions2.93.53.8-1.91.82.01.7
Intermittent access day 1 locomotion1.11.41.9-1.21.40.91.2
Intermittent access day 15 total locomotion0.00.00.0-0.10.1-0.0-0.2
Intermittent access total locomotion0.70.91.4-1.01.20.70.9
Intermittent access standard deviation1.43.03.4-1.81.61.81.6
Left kidney weight1.25.56.3-2.42.22.52.2
Right kidney weight1.67.37.9-2.82.82.52.7
Cocaine induced anxiety0.10.10.1-0.30.20.40.2
Post-drug Anxiety0.30.30.60.6-0.4-0.8-0.4
Baseline Anxiety1.92.23.11.6-1.3-1.8-1.2
Tail length1.24.55.1-2.12.02.32.2
Length with tail1.87.88.6-2.72.92.72.8
Length without tail1.13.45.5-1.72.31.41.8
Times rat made contact with spout0.10.10.3-0.50.30.20.5
Lifetime Intake3.13.74.2-2.01.82.11.9
Liver weight, left2.94.86.4-2.12.51.92.2
Liver weight, right2.64.64.9-2.02.22.12.2
Locomotor activity0.00.00.10.10.0-0.1-0.4
Locomotor testing distance1.63.04.2-1.62.01.51.6
Locomotor testing rearing0.40.71.0-0.81.00.90.6
Locomotion in novel chamber0.30.40.7-0.60.80.50.6
Locomotion in novel chamber post-restriction0.40.70.90.9-0.8-0.9-0.7
Fecal boli incidents, locomotor time 12.63.84.62.1-2.0-1.8-1.8
Change in fecal boli incidents, locomotor task1.21.21.6-1.31.11.00.9
Time >=10cm from walls, locomotor time 10.10.10.20.2-0.40.00.1
Bouts of movement, locomotor time 10.00.00.10.00.30.10.1
Total resting periods, locomotor time 10.00.00.1-0.10.20.30.2
Rest time, locomotor task time 10.50.71.50.7-1.20.2-0.8
Distance moved, locomotor task time 11.31.92.8-1.41.70.81.5
Vertical activity count, locomotor time 10.10.30.5-0.30.7-0.20.6
Time >=10cm from walls, locomotor time 23.95.86.7-2.42.32.62.4
Bouts of movement, locomotor time 20.30.40.9-0.51.0-0.00.7
Total resting periods, locomotor time 20.30.51.1-0.61.00.10.8
Rest time, locomotor task time 22.53.14.61.7-2.1-1.4-1.7
Distance moved, locomotor task time 25.87.08.8-2.53.02.32.7
Vertical activity count, locomotor time 23.04.25.2-1.92.31.82.1
Light reinforcement 10.20.51.3-0.70.31.10.2
Light reinforcement 20.20.31.1-0.4-0.01.00.3
Bone: marrow area0.20.40.40.6-0.6-0.7-0.6
Bone: maximum diameter0.40.81.2-0.90.61.10.9
Bone: maximum force0.20.40.5-0.70.60.60.4
Bone: maximum moment0.10.10.2-0.40.50.30.2
Mean time between licks in bursts0.61.52.31.3-0.9-1.5-1.2
Mean num. licks in bursts0.10.20.6-0.20.80.10.3
Cd content in liver4.24.75.7-2.11.72.42.4
Co content in liver0.80.91.31.1-0.8-1.1-0.8
Cu content in liver0.40.40.80.9-0.5-0.7-0.5
Fe content in liver0.10.10.10.10.4-0.20.3
K content in liver2.72.63.71.6-1.5-1.9-1.4
Mg content in liver0.30.30.50.5-0.5-0.7-0.2
Mn content in liver0.50.50.70.7-0.9-0.6-0.7
Na content in liver1.01.11.9-1.10.90.81.4
Rb content in liver0.50.60.91.0-0.4-0.9-0.6
Se content in liver5.05.96.42.5-2.1-2.5-2.5
Sr content in liver0.10.10.20.2-0.1-0.4-0.1
Zn content in liver0.40.40.6-0.50.50.80.7
Bone: minimum diameter1.32.42.7-1.61.51.51.5
Time in familiar zone, hab. session 10.50.50.70.8-0.5-0.7-0.6
Time in novel zone, hab. session 11.01.01.4-1.20.91.00.9
Total zone transitions, hab. session 10.81.11.6-1.31.11.00.9
Total locomotion distance, hab. session 10.10.20.30.1-0.3-0.5-0.5
Locomotion velocity, hab. session 10.20.30.50.3-0.4-0.7-0.6
Time in familiar zone, hab. session 20.30.40.70.5-0.9-0.5-0.5
Time in novel zone, hab. session 20.80.81.0-0.81.00.90.8
Total zone transitions, hab. session 20.81.01.4-1.10.71.20.9
Total locomotion distance, hab. session 20.70.91.50.7-1.2-0.7-1.0
Locomotion velocity, hab. session 20.70.91.40.7-1.2-0.8-1.0
Novel to familiar place preference ratio1.21.31.8-1.21.30.81.2
Novelty place preference1.41.62.0-1.31.40.91.4
Time in novel zone, NPP test1.31.31.8-1.21.30.81.2
Total zone transitions, NPP test1.52.12.61.4-1.6-1.4-1.4
Total locomotion distance, NPP test2.63.54.41.8-2.1-1.8-1.9
Locomotion velocity, NPP test2.33.33.91.7-2.0-1.8-1.7
Intraocular pressure0.30.50.90.6-1.0-0.5-0.7
Delta distance traveled before/after self-admin0.10.20.3-0.40.60.40.2
Delta ambulatory time before/after self-admin0.50.71.2-0.71.10.70.6
Parametrial fat weight0.00.00.1-0.1-0.10.30.1
Pavlov. Cond. lever latency0.81.01.01.0-1.0-1.0-1.0
Pavlov. Cond. magazine entry latency1.72.22.6-1.51.61.61.3
Pavlov. Cond. change in total contacts0.00.00.10.10.3-0.1-0.2
Pavlov. Cond. index score0.60.80.9-0.81.00.90.8
Pavlov. Cond. latency score0.70.91.0-0.91.01.00.9
Pavlov. Cond. lever contacts0.91.11.3-1.01.11.11.0
Pavlov. Cond. magazine entry number2.12.72.91.6-1.7-1.7-1.5
Pavlov. Cond. intertrial magazine entries0.20.20.40.3-0.5-0.6-0.1
Pavlov. Cond. lever-magazine prob. diff.0.40.50.7-0.70.80.80.6
Pavlov. Cond. response bias1.72.12.5-1.41.61.51.3
Pavlov. Cond. lever latency2.02.72.81.6-1.7-1.6-1.7
Pavlov. Cond. magazine entry latency0.70.80.9-0.91.00.80.9
Pavlov. Cond. change in total contacts0.61.01.1-1.00.91.01.0
Pavlov. Cond. index score1.92.62.8-1.61.71.51.7
Pavlov. Cond. latency score1.82.42.6-1.61.51.51.6
Pavlov. Cond. lever contacts2.63.73.8-1.92.01.81.9
Pavlov. Cond. magazine entry number0.81.01.21.1-1.0-0.9-1.1
Pavlov. Cond. intertrial magazine entries0.00.00.00.10.1-0.10.1
Pavlov. Cond. lever-magazine prob. diff.1.82.42.7-1.51.61.41.6
Pavlov. Cond. response bias2.93.94.3-2.02.11.92.0
Time in closed arm before self-admin4.15.26.6-2.42.61.92.2
Time in closed arm after self-admin0.90.91.5-1.21.01.00.5
Time in open arm before self-admin5.35.86.62.6-2.3-2.4-2.3
Time in open arm after self-admin4.95.46.02.5-2.4-2.3-2.1
Bone: periosteal estimation0.00.00.0-0.20.00.10.0
Bone: periosteal perimeter0.91.62.2-1.31.11.51.1
Bone: post-yield work0.10.20.40.2-0.5-0.2-0.6
Progressive ratio test 1 active lever presses2.43.03.9-1.81.42.01.6
Progressive ratio test 1 breakpoint2.63.24.3-1.91.52.11.7
Progressive ratio test 1 inactive lever presses1.21.82.2-1.51.31.41.2
Progressive ratio test 2 active lever presses5.16.06.9-2.62.32.52.4
Progressive ratio test 2 breakpoint5.36.07.0-2.62.32.52.3
Progressive ratio test 2 inactive lever presses3.65.96.9-2.52.62.12.4
Incentive Sensitization - Responses3.24.54.8-2.22.21.92.2
Incentive Sensitization - Breakpoint3.14.04.4-2.12.11.82.0
Sum of active levers in priming session hrs 5-60.30.30.70.8-0.4-0.3-0.4
Progressive ratio0.60.91.1-1.00.90.91.0
Food seeking constrained by brief footshock0.30.40.5-0.60.70.60.6
Seeking ratio, punishment vs. effort0.60.81.10.8-0.9-0.8-1.0
Retroperitoneal fat weight12.553.259.6-7.77.56.97.1
Reaction time number correct0.00.00.10.2-0.30.1-0.1
Reaction time mean minus median0.10.20.3-0.30.40.60.3
Reaction time mean minus median AUC0.10.30.4-0.40.60.60.5
Reaction time num false alarms2.43.44.41.8-2.1-1.6-1.9
Reaction time num false alarms AUC2.43.84.32.0-2.1-1.7-2.0
Reaction time trials correct on left0.00.00.10.2-0.30.1-0.1
Reaction time trials on left0.00.10.10.2-0.40.1-0.2
Reaction time mean0.81.31.7-1.01.31.01.3
Reaction time mean AUC1.32.12.6-1.31.61.31.6
Median of all reaction times1.42.02.6-1.21.61.21.6
Reaction time omissions0.20.30.50.6-0.4-0.7-0.5
Reaction time false alarm rate3.04.14.42.1-2.0-2.0-2.1
Reaction time premature initiation rate0.10.20.40.1-0.60.1-0.4
Reaction time premature initiations0.10.20.60.2-0.80.1-0.5
Std. dev. reaction times0.20.40.5-0.50.70.60.6
Reaction time trials completed0.00.10.10.2-0.40.1-0.2
Reaction time trials AUC0.00.00.10.0-0.20.2-0.0
Run reversals in cocaine runway, females1.31.31.9-1.21.20.71.4
Run reversals in cocaine runway, males0.90.92.01.0-0.2-1.4-0.9
Latency to leave start box in cocaine runway0.80.91.10.9-1.0-0.8-0.9
Latency to leave start box in cocaine runway, F0.30.40.50.7-0.6-0.5-0.6
Latency to leave start box in cocaine runway, M0.20.20.30.4-0.5-0.6-0.4
Std. dev. time between licks in bursts0.00.00.1-0.10.0-0.3-0.1
Total sessions with >9 infusions1.31.52.5-1.31.01.61.0
Short access day 1 total inactive lever presses0.70.91.0-1.01.00.81.0
Short access day 10 total inactive lever presses0.51.11.7-0.91.30.71.2
Short access day 1 total infusions3.64.85.7-2.22.12.42.0
Short access day 10 total infusions1.11.41.9-1.31.01.41.0
Short access total infusions2.43.14.1-1.81.52.01.7
Short access day 1 locomotion1.01.22.0-1.11.11.40.5
Short access day 10 total locomotion1.32.52.8-1.61.71.61.4
Short access total locomotion1.51.82.1-1.41.41.51.1
One hour access (0.3 mA shock)3.84.34.7-2.12.22.11.9
Compulsive drug intake3.23.84.92.1-1.8-2.2-1.7
One hour access (shock baseline)5.17.79.2-2.92.83.02.4
Social response proportion2.02.33.01.7-1.7-1.4-1.2
Social responses0.20.20.8-0.3-0.10.90.4
Social time2.63.54.32.1-1.8-1.8-1.7
Soleus weight0.92.64.21.6-1.3-2.0-1.4
Bone: stiffness0.71.21.6-1.20.71.31.0
Tibialis anterior weight1.86.16.42.5-2.4-2.5-2.5
Time to tail flick, vehicle, before self-admin0.80.91.4-0.81.20.90.8
Time to tail flick, vehicle, after self-admin2.33.13.7-1.91.61.81.7
Time to tail flick, test, before self-admin1.61.72.4-1.31.61.21.2
Time to tail flick, test, after self-admin2.42.53.0-1.71.41.71.6
Delta time to tail flick, vehicle, before/after SA0.30.30.4-0.60.40.40.7
Delta time to tail flick, test, before/after SA0.20.20.60.3-0.8-0.1-0.3
Tibia length0.00.10.1-0.10.30.20.3
Ambulatory time before self-admin0.00.00.0-0.0-0.20.20.0
Ambulatory time after self-admin1.61.92.8-1.31.31.71.1
Bone: tissue strength0.40.40.50.6-0.7-0.4-0.7
Total heroin consumption0.10.10.30.5-0.2-0.4-0.2
Bone: trabecular number0.20.40.6-0.80.60.60.5
Bone: trabecular spacing0.10.10.3-0.30.10.60.3
Bone: trabecular thickness0.40.50.7-0.80.60.70.8
Bone: trabecular tissue density0.30.40.80.8-0.4-0.9-0.3
Water consumed over 24 hours0.81.11.3-1.21.01.01.1
Number of responses in last shaping day4.65.05.6-2.42.22.32.1