Gtpbp1

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 PL gene expression Gtpbp1 0.04 0.02 6.1e-04 0.04 0.03 0.05 0.05 1.1e-05 1.2e-04 5.7e-06 7.9e-06
2 Brain mRNA stability Gtpbp1 0.17 0.06 7.2e-16 0.14 0.15 0.17 0.16 4.4e-13 6.6e-14 1.9e-15 7.1e-15
3 Adipose gene expression Gtpbp1 0.13 0.06 5.6e-17 0.15 0.13 0.12 0.14 1.4e-16 3.8e-14 9.9e-14 2.2e-15
4 PL mRNA stability Gtpbp1 0.03 0.02 2.1e-03 0.03 0.03 0.01 0.03 4.2e-04 8.1e-04 8.2e-03 3.0e-04

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density0.10.10.1-0.3-0.40.2-0.3
Area under the delay curve3.84.56.3-2.5-2.32.3-0.9
BMI with tail0.72.53.51.61.6-1.91.2
BMI without tail0.61.92.71.61.6-1.30.7
Body weight1.98.412.33.53.3-3.20.8
Weight adjusted by age0.60.91.61.11.3-0.70.6
Bone surface0.10.20.2-0.4-0.40.5-0.4
Bone volume0.00.00.1-0.2-0.30.1-0.1
Breakpoint value in progressive ratio session0.10.20.3-0.4-0.5-0.1-0.4
Number of licking bursts0.40.71.3-0.9-0.81.10.1
Context. condit. distance diff. score8.710.514.13.83.4-3.42.2
Locomotion velocity, session 10.50.61.2-0.1-0.11.1-1.1
Locomotion distance, session 13.74.68.1-2.2-2.12.8-1.0
Locomotion velocity, session 20.10.10.1-0.1-0.30.1-0.4
Locomotion distance, session 26.79.411.6-3.2-3.23.4-2.3
Locomotion velocity, session 33.33.85.52.02.3-1.51.8
Locomotion distance, session 30.80.92.90.30.60.11.7
Stereotopy head waving bouts, day 30.30.31.20.30.2-0.3-1.1
Stereotopy head waving duration, day 31.11.31.81.31.1-1.4-0.7
Locomotion velocity, session 70.80.81.10.90.8-1.00.8
Locomotion distance, session 70.10.10.20.1-0.10.1-0.5
Stereotopy head waving bouts, day 74.75.36.72.32.6-2.41.8
Stereotopy head waving duration, day 74.04.86.02.02.4-2.41.9
Locomotion velocity, session 81.41.62.91.71.3-1.4-0.2
Locomotion distance, session 80.71.11.71.31.1-0.90.8
Degree of sensitization distance0.91.02.90.50.1-0.8-1.7
Degree of sensitization stereotypy3.84.25.22.02.3-2.11.8
Conditioned locomotion0.50.60.80.90.8-0.90.1
Cocaine response after cond. corrected0.30.31.0-0.2-0.20.4-1.0
Cocaine response after cond. not corrected0.20.20.5-0.3-0.20.2-0.7
Cocaine response before conditioning0.20.31.0-0.2-0.0-0.21.0
Saline control response0.81.11.91.11.4-0.80.7
Bone: connectivity density0.00.10.10.40.1-0.2-0.3
Bone: cortical apparent density0.91.22.90.71.1-0.41.7
Bone: cortical area0.20.30.9-0.2-0.50.2-0.9
Bone: cortical porosity0.20.20.40.1-0.2-0.6-0.6
Bone: cortical porosity0.40.51.10.40.1-0.7-1.1
Bone: cortical thickness0.81.31.9-1.2-1.41.1-0.6
Bone: cortical thickness2.12.53.6-1.4-1.81.9-1.1
Bone: cortical tissue density0.91.22.70.71.1-0.41.6
Condit. Reinf. active minus inactive responses0.10.10.2-0.5-0.10.4-0.1
Condit. Reinf. active-inactive response ratio0.40.40.70.40.8-0.40.8
Condit. Reinf. active responses0.10.20.4-0.6-0.20.40.1
Condit. Reinf. inactive responses0.10.10.2-0.5-0.30.20.2
Incentive salience index mean0.20.20.4-0.7-0.30.5-0.2
Condit. Reinf. lever presses0.10.10.4-0.6-0.30.2-0.3
Condit. Reinf. active minus inactive responses1.01.41.9-0.8-1.01.4-1.3
Condit. Reinf. active-inactive response ratio0.60.71.6-0.3-0.60.7-1.3
Condit. Reinf. active responses0.50.71.1-0.5-0.71.0-1.0
Condit. Reinf. inactive responses0.20.20.3-0.5-0.50.5-0.1
Condit. Reinf. lever presses0.40.50.6-0.8-0.80.6-0.7
Condit. Reinf. lever reinforcers received0.60.81.5-0.6-0.70.9-1.2
Conditioned reinforcement - actives1.62.83.8-1.6-1.91.9-1.0
Conditioned reinforcement - inactives3.65.47.5-2.3-2.72.1-2.1
Conditioned locomotion2.53.23.6-1.6-1.81.8-1.9
Patch foraging indifference point 0 sec0.20.30.9-0.1-0.10.5-0.9
Patch foraging indifference point AUC1.92.73.5-1.7-1.81.9-1.2
Delay disc. indifference point, 0s delay0.20.20.4-0.6-0.40.0-0.5
Delay disc. indifference point, 16s delay4.65.16.6-2.6-2.42.6-1.1
Delay disc. indifference point, 2s delay5.46.09.0-3.0-2.92.6-0.1
Delay disc. indifference point, 24s delay0.60.61.3-0.6-0.71.1-0.7
Delay disc. indifference point, 4s delay2.12.23.3-1.8-1.51.6-0.8
Delay disc. indifference point, 8s delay2.63.13.9-2.0-2.02.0-0.9
Indifference point function ln k2.44.24.82.22.2-2.21.6
Indifference point function log k2.44.24.82.22.2-2.21.6
Patch foraging total patch changes 0 sec0.20.50.7-0.5-0.40.8-0.9
Patch foraging total patch changes 12 sec0.81.01.6-0.9-0.81.0-1.3
Patch foraging total patch changes 18 sec2.03.05.0-1.5-1.61.5-2.2
Patch foraging total patch changes 24 sec0.50.81.5-1.0-1.20.8-0.4
Patch foraging total patch changes 6 sec2.03.14.0-1.6-1.71.7-2.0
Patch foraging time to switch 0 sec0.10.10.3-0.3-0.30.2-0.5
Patch foraging water rate 0 sec0.10.20.30.50.4-0.2-0.4
Patch foraging water rate 12 sec0.10.30.50.30.4-0.50.7
Patch foraging water rate 18 sec0.10.10.10.30.4-0.3-0.4
Patch foraging water rate 24 sec1.82.53.81.71.8-2.00.4
Patch foraging water rate 6 sec0.50.70.90.80.9-0.80.8
Seeking ratio, delayed vs. immediate footshock0.10.10.2-0.5-0.3-0.10.3
Distance traveled before self-admin2.02.63.6-1.9-1.81.5-1.1
Distance traveled after self-admin1.31.64.8-0.7-0.80.7-2.2
Extensor digitorum longus weight0.51.82.8-1.7-1.41.5-0.0
Bone: elastic displacement0.30.30.60.70.8-0.40.0
Bone: elastic work0.40.51.40.50.3-0.3-1.2
Bone: endosteal estimation0.30.61.40.70.5-0.7-1.2
Bone: endosteal perimeter0.40.91.41.10.8-1.2-0.4
Epididymis fat weight2.48.311.53.43.0-3.21.5
Delta time in closed arm before/after self-admin1.21.11.2-0.9-1.11.1-1.0
Delta time in open arm before/after self-admin0.10.10.3-0.20.10.60.3
Diff in mean of infusions in LGA sessions0.10.10.30.50.1-0.50.0
Delay discount exponential model param3.94.36.02.52.3-2.30.8
Extinction: sum of active levers before priming0.70.81.6-1.3-1.10.6-0.2
Active lever presses in extinction session 60.00.00.1-0.10.1-0.00.3
Bone: final force0.60.93.0-0.3-0.70.4-1.7
Bone: final moment0.61.03.5-0.3-0.60.4-1.9
Food consumed during 24 hour testing period0.20.30.9-0.2-0.40.0-0.9
Glucose0.10.10.20.30.1-0.3-0.5
Heart weight1.32.02.81.61.5-1.7-0.6
Delay discount hyperbolic model param4.14.66.52.62.4-2.40.7
Intermittent access intake day 1-15 change0.00.00.10.30.30.00.2
Intermittent access intake escalation0.00.10.20.20.30.10.5
Intermittent access intake escalation 20.10.10.20.30.30.20.4
Intermitt. access day 1 inactive lever presses0.20.82.9-0.0-0.4-0.4-1.7
Intermitt. access day 15 inactive lever presses0.40.81.8-0.6-0.90.4-1.3
Intermitt. access escalation Index0.20.20.6-0.4-0.3-0.30.7
Intermittent access day 1 total infusions3.15.06.3-2.2-2.51.9-2.3
Intermittent access day 15 total infusions1.92.83.5-1.7-1.81.9-1.2
Intermittent access terminal intake (last 3 days)2.22.93.8-1.7-1.81.9-1.3
Intermittent access total infusions5.86.98.2-2.6-2.92.6-2.4
Intermittent access day 1 locomotion2.83.64.7-2.0-2.21.4-1.9
Intermittent access day 15 total locomotion0.81.42.6-0.9-1.30.6-1.6
Intermittent access total locomotion1.82.15.0-1.0-1.40.8-2.2
Intermittent access standard deviation1.53.27.2-1.3-1.61.2-2.7
Left kidney weight3.013.820.94.64.0-4.20.1
Right kidney weight4.018.328.15.34.7-4.8-0.3
Cocaine induced anxiety0.50.71.01.00.7-0.90.7
Post-drug Anxiety1.92.02.51.61.5-1.31.2
Baseline Anxiety0.10.10.4-0.4-0.10.6-0.0
Tail length0.52.03.41.81.8-1.20.3
Length with tail1.66.811.03.33.1-2.50.5
Length without tail1.34.26.12.42.1-2.5-0.5
Times rat made contact with spout0.10.10.2-0.2-0.30.4-0.1
Lifetime Intake6.78.19.6-2.8-3.12.8-2.6
Liver weight, left1.42.32.81.51.6-1.31.7
Liver weight, right7.713.515.43.93.9-3.92.9
Locomotor activity1.01.62.51.61.5-1.10.2
Locomotor testing distance0.00.10.10.30.30.10.1
Locomotor testing rearing0.20.40.50.70.7-0.60.1
Locomotion in novel chamber0.60.72.60.10.4-0.31.6
Locomotion in novel chamber post-restriction0.50.91.4-1.2-1.00.80.7
Fecal boli incidents, locomotor time 11.82.65.5-1.2-1.21.3-2.4
Change in fecal boli incidents, locomotor task2.72.73.81.91.7-1.31.5
Time >=10cm from walls, locomotor time 10.50.51.50.50.3-0.4-1.2
Bouts of movement, locomotor time 10.50.50.90.70.8-1.00.3
Total resting periods, locomotor time 10.10.10.20.20.3-0.5-0.3
Rest time, locomotor task time 10.10.20.40.1-0.3-0.4-0.6
Distance moved, locomotor task time 10.91.42.11.21.2-0.91.5
Vertical activity count, locomotor time 10.51.21.81.31.3-1.00.6
Time >=10cm from walls, locomotor time 20.30.40.60.50.7-0.8-0.4
Bouts of movement, locomotor time 20.30.51.3-0.6-0.4-0.11.2
Total resting periods, locomotor time 20.30.61.1-1.0-0.90.40.6
Rest time, locomotor task time 20.50.71.1-0.6-1.00.6-1.0
Distance moved, locomotor task time 21.11.41.71.11.3-1.21.1
Vertical activity count, locomotor time 20.81.11.71.11.1-1.30.2
Light reinforcement 10.10.20.4-0.6-0.50.4-0.4
Light reinforcement 20.71.01.70.60.9-1.31.1
Bone: marrow area0.30.71.50.70.5-0.7-1.2
Bone: maximum diameter0.30.61.00.80.5-0.7-1.0
Bone: maximum force0.81.44.5-0.4-0.90.6-2.1
Bone: maximum moment0.81.54.9-0.3-0.80.5-2.2
Mean time between licks in bursts0.30.71.4-1.1-0.51.20.1
Mean num. licks in bursts0.50.81.21.10.9-1.10.3
Cd content in liver0.50.50.80.90.8-0.40.6
Co content in liver1.01.21.8-1.1-0.91.3-0.9
Cu content in liver2.52.94.2-2.0-1.92.0-0.4
Fe content in liver1.92.33.11.71.8-1.6-0.9
K content in liver0.00.00.1-0.1-0.20.4-0.1
Mg content in liver0.10.10.2-0.1-0.40.3-0.4
Mn content in liver0.10.10.4-0.1-0.1-0.20.6
Na content in liver0.10.10.2-0.0-0.00.0-0.5
Rb content in liver0.80.91.2-0.8-0.91.1-1.1
Se content in liver0.40.51.60.40.5-0.21.3
Sr content in liver1.41.21.7-1.3-1.31.00.7
Zn content in liver0.10.10.20.40.20.10.4
Bone: minimum diameter0.10.30.9-0.1-0.4-0.1-0.9
Time in familiar zone, hab. session 10.20.20.3-0.3-0.40.6-0.4
Time in novel zone, hab. session 11.01.01.51.11.1-1.20.4
Total zone transitions, hab. session 10.60.81.8-0.6-0.31.31.0
Total locomotion distance, hab. session 10.40.61.70.40.50.21.3
Locomotion velocity, hab. session 10.20.30.8-0.1-0.00.60.9
Time in familiar zone, hab. session 20.70.82.20.50.6-0.51.5
Time in novel zone, hab. session 20.70.82.2-0.5-0.70.4-1.5
Total zone transitions, hab. session 21.92.43.6-1.4-1.41.9-1.4
Total locomotion distance, hab. session 22.02.63.0-1.5-1.51.7-1.6
Locomotion velocity, hab. session 22.43.24.0-1.7-1.72.0-1.8
Novel to familiar place preference ratio3.13.44.72.22.1-1.81.0
Novelty place preference4.54.86.32.52.5-2.21.4
Time in novel zone, NPP test5.35.77.52.72.7-2.41.5
Total zone transitions, NPP test1.11.63.9-1.2-1.02.0-0.1
Total locomotion distance, NPP test0.81.02.2-1.0-0.81.5-0.7
Locomotion velocity, NPP test1.21.73.1-1.5-1.11.8-0.6
Intraocular pressure0.30.40.60.80.6-0.70.4
Delta distance traveled before/after self-admin1.71.82.91.71.4-1.4-0.7
Delta ambulatory time before/after self-admin1.11.41.91.41.2-0.9-1.1
Parametrial fat weight1.53.65.21.82.0-2.31.5
Pavlov. Cond. lever latency0.10.10.30.60.4-0.10.1
Pavlov. Cond. magazine entry latency1.62.02.8-1.7-1.71.3-0.8
Pavlov. Cond. change in total contacts3.84.15.6-2.4-2.31.9-1.4
Pavlov. Cond. index score0.91.11.5-1.2-1.20.8-0.9
Pavlov. Cond. latency score0.50.60.9-0.9-0.90.5-0.6
Pavlov. Cond. lever contacts0.70.81.4-1.2-1.10.6-0.5
Pavlov. Cond. magazine entry number1.72.23.01.71.7-1.50.8
Pavlov. Cond. intertrial magazine entries0.30.40.7-0.5-0.20.8-0.8
Pavlov. Cond. lever-magazine prob. diff.0.81.01.5-1.2-1.20.8-0.6
Pavlov. Cond. response bias1.51.92.8-1.7-1.71.2-0.8
Pavlov. Cond. lever latency0.20.20.60.40.3-0.10.8
Pavlov. Cond. magazine entry latency2.83.43.4-1.9-1.81.8-1.8
Pavlov. Cond. change in total contacts1.11.86.7-0.4-0.50.3-2.6
Pavlov. Cond. index score1.01.32.5-1.0-0.90.9-1.6
Pavlov. Cond. latency score1.31.72.7-1.2-1.11.2-1.7
Pavlov. Cond. lever contacts0.10.20.6-0.3-0.20.0-0.8
Pavlov. Cond. magazine entry number0.80.91.70.80.8-0.91.3
Pavlov. Cond. intertrial magazine entries0.10.10.10.1-0.2-0.4-0.4
Pavlov. Cond. lever-magazine prob. diff.0.91.22.2-1.0-0.90.9-1.5
Pavlov. Cond. response bias0.71.02.1-0.9-0.90.6-1.4
Time in closed arm before self-admin0.91.11.6-1.3-1.20.9-0.9
Time in closed arm after self-admin0.20.20.7-0.1-0.4-0.1-0.9
Time in open arm before self-admin0.30.40.50.70.5-0.70.4
Time in open arm after self-admin0.40.51.40.40.6-0.01.2
Bone: periosteal estimation0.20.51.60.30.1-0.4-1.2
Bone: periosteal perimeter0.61.11.71.30.9-1.2-0.6
Bone: post-yield work0.91.41.9-1.0-1.21.1-1.4
Progressive ratio test 1 active lever presses4.04.96.0-2.3-2.51.9-2.1
Progressive ratio test 1 breakpoint3.74.65.5-2.2-2.31.9-2.0
Progressive ratio test 1 inactive lever presses5.27.59.1-2.7-3.02.4-2.7
Progressive ratio test 2 active lever presses3.54.15.4-2.0-2.31.9-1.8
Progressive ratio test 2 breakpoint3.84.45.8-2.1-2.42.0-1.7
Progressive ratio test 2 inactive lever presses2.23.65.2-2.0-2.31.8-1.4
Incentive Sensitization - Responses0.30.40.6-0.6-0.80.6-0.3
Incentive Sensitization - Breakpoint0.30.30.6-0.6-0.80.6-0.3
Sum of active levers in priming session hrs 5-60.20.20.50.30.3-0.70.4
Progressive ratio0.20.30.7-0.3-0.30.4-0.8
Food seeking constrained by brief footshock0.20.30.7-0.4-0.50.90.0
Seeking ratio, punishment vs. effort0.10.10.2-0.3-0.40.30.1
Retroperitoneal fat weight2.711.516.93.73.6-4.11.6
Reaction time number correct0.50.92.90.30.5-0.51.7
Reaction time mean minus median0.00.00.00.10.0-0.0-0.1
Reaction time mean minus median AUC0.20.40.60.80.6-0.80.4
Reaction time num false alarms0.20.30.40.50.5-0.60.5
Reaction time num false alarms AUC0.20.30.50.40.6-0.50.7
Reaction time trials correct on left0.50.92.90.30.5-0.51.7
Reaction time trials on left0.50.92.90.20.4-0.51.7
Reaction time mean0.10.10.30.60.4-0.2-0.2
Reaction time mean AUC0.10.10.30.60.3-0.2-0.1
Median of all reaction times0.10.10.30.50.3-0.1-0.2
Reaction time omissions0.71.01.4-1.2-1.21.1-0.1
Reaction time false alarm rate0.10.10.10.30.4-0.30.1
Reaction time premature initiation rate0.81.13.0-0.6-1.00.3-1.7
Reaction time premature initiations0.10.30.6-0.3-0.6-0.2-0.8
Std. dev. reaction times0.20.40.70.90.6-0.70.0
Reaction time trials completed0.50.92.90.20.4-0.51.7
Reaction time trials AUC0.50.92.70.40.5-0.71.6
Run reversals in cocaine runway, females0.90.91.20.91.1-0.61.1
Run reversals in cocaine runway, males0.20.20.60.40.30.80.0
Latency to leave start box in cocaine runway0.30.30.50.30.6-0.70.6
Latency to leave start box in cocaine runway, F0.20.20.4-0.6-0.20.7-0.1
Latency to leave start box in cocaine runway, M2.72.54.71.51.4-2.21.2
Std. dev. time between licks in bursts0.60.81.2-0.7-0.31.1-1.1
Total sessions with >9 infusions2.53.03.9-1.6-1.81.6-2.0
Short access day 1 total inactive lever presses4.15.414.4-1.3-1.61.7-3.8
Short access day 10 total inactive lever presses0.51.21.91.30.9-1.4-0.5
Short access day 1 total infusions1.82.44.5-1.3-1.41.4-2.1
Short access day 10 total infusions1.82.43.0-1.5-1.71.2-1.7
Short access total infusions4.05.16.1-2.2-2.52.0-2.4
Short access day 1 locomotion1.01.22.4-0.8-0.91.0-1.5
Short access day 10 total locomotion1.22.34.3-1.4-1.60.5-2.1
Short access total locomotion1.92.23.6-1.4-1.51.0-1.9
One hour access (0.3 mA shock)6.77.810.6-3.2-3.32.9-1.4
Compulsive drug intake0.10.10.2-0.3-0.40.30.5
One hour access (shock baseline)2.03.14.2-2.0-2.01.7-1.1
Social response proportion0.30.40.6-0.7-0.50.4-0.8
Social responses1.31.72.8-1.3-1.21.7-0.9
Social time3.85.27.3-2.4-2.32.7-1.6
Soleus weight0.41.11.4-0.7-1.21.0-1.1
Bone: stiffness0.50.93.3-0.2-0.50.0-1.8
Tibialis anterior weight2.06.89.2-3.0-2.93.0-0.8
Time to tail flick, vehicle, before self-admin0.10.10.30.2-0.1-0.5-0.4
Time to tail flick, vehicle, after self-admin0.30.40.70.70.8-0.8-0.2
Time to tail flick, test, before self-admin0.60.61.2-0.5-0.50.91.1
Time to tail flick, test, after self-admin0.00.00.0-0.00.10.00.2
Delta time to tail flick, vehicle, before/after SA0.40.40.8-0.5-0.10.7-0.9
Delta time to tail flick, test, before/after SA0.10.10.20.20.4-0.40.0
Tibia length0.10.30.60.70.4-0.3-0.8
Ambulatory time before self-admin1.11.62.2-1.5-1.41.4-0.6
Ambulatory time after self-admin0.91.03.1-0.4-0.40.8-1.8
Bone: tissue strength0.40.40.60.80.6-0.70.2
Total heroin consumption1.01.21.8-1.3-1.11.1-0.7
Bone: trabecular number0.30.50.70.70.7-0.60.8
Bone: trabecular spacing0.50.72.6-0.1-0.50.2-1.6
Bone: trabecular thickness0.30.30.90.10.2-0.70.9
Bone: trabecular tissue density0.00.00.1-0.20.10.30.1
Water consumed over 24 hours0.20.30.8-0.2-0.30.5-0.9
Number of responses in last shaping day8.08.810.1-3.2-3.22.7-2.7