Gsta2

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Liver intron excision ratio chr8_88074695_88077052 0.03 0.02 3.7e-03 0.02 0.02 0.01 0.02 4.3e-03 3.6e-03 8.0e-03 5.2e-03
2 Adipose gene expression Gsta2 0.02 0.01 3.0e-03 0.01 0.02 0.01 0.01 2.6e-02 4.6e-03 9.5e-03 2.0e-02
3 Liver gene expression Gsta2 0.78 0.05 0.0e+00 0.62 0.64 0.65 0.65 9.1e-89 1.4e-91 9.8e-96 9.6e-96
4 Liver mRNA stability Gsta2 0.26 0.12 0.0e+00 0.25 0.26 0.27 0.26 4.3e-27 2.7e-28 5.9e-30 1.3e-28

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density0.50.81.1-1.0-0.9-1.10.4
Area under the delay curve1.92.23.50.91.11.9-1.7
BMI with tail5.619.427.1-5.2-4.8-4.13.3
BMI without tail1.44.37.5-2.7-2.3-1.91.2
Body weight1.88.013.0-3.6-2.9-2.81.6
Weight adjusted by age0.20.30.9-1.0-0.5-0.3-0.2
Bone surface3.66.58.0-2.8-2.6-2.81.8
Bone volume1.52.73.6-1.9-1.7-1.90.9
Breakpoint value in progressive ratio session1.31.52.3-0.9-1.1-1.31.5
Number of licking bursts0.30.50.8-0.9-0.9-0.50.4
Context. condit. distance diff. score0.10.10.4-0.7-0.1-0.2-0.3
Locomotion velocity, session 11.11.21.41.11.21.2-0.9
Locomotion distance, session 11.01.31.51.01.21.1-1.2
Locomotion velocity, session 21.01.11.51.21.01.1-0.8
Locomotion distance, session 21.72.42.91.71.61.5-1.3
Locomotion velocity, session 30.10.10.2-0.4-0.4-0.40.2
Locomotion distance, session 30.30.30.70.80.60.30.1
Stereotopy head waving bouts, day 32.22.63.3-1.2-1.8-1.61.8
Stereotopy head waving duration, day 31.41.61.9-1.1-1.4-1.41.2
Locomotion velocity, session 70.20.20.4-0.6-0.5-0.20.2
Locomotion distance, session 70.00.00.10.10.20.3-0.2
Stereotopy head waving bouts, day 70.10.10.3-0.20.10.5-0.5
Stereotopy head waving duration, day 70.10.10.4-0.6-0.20.2-0.3
Locomotion velocity, session 80.20.30.4-0.6-0.5-0.60.3
Locomotion distance, session 80.60.91.00.71.01.0-1.0
Degree of sensitization distance0.10.10.5-0.20.10.2-0.7
Degree of sensitization stereotypy0.30.40.60.00.40.8-0.8
Conditioned locomotion0.91.01.71.20.91.3-0.1
Cocaine response after cond. corrected0.00.00.1-0.3-0.10.10.2
Cocaine response after cond. not corrected0.10.10.3-0.6-0.20.10.2
Cocaine response before conditioning0.10.10.3-0.6-0.00.0-0.0
Saline control response0.60.81.6-1.3-0.9-0.70.3
Bone: connectivity density0.91.42.1-1.0-1.1-1.41.1
Bone: cortical apparent density1.72.33.11.71.61.6-0.8
Bone: cortical area0.30.51.0-0.5-0.8-1.00.4
Bone: cortical porosity0.00.00.2-0.00.10.4-0.1
Bone: cortical porosity0.00.00.0-0.1-0.00.20.1
Bone: cortical thickness1.32.23.71.91.51.4-0.9
Bone: cortical thickness0.00.00.00.0-0.00.10.1
Bone: cortical tissue density1.62.22.91.71.61.6-0.9
Condit. Reinf. active minus inactive responses1.11.22.00.81.11.4-1.0
Condit. Reinf. active-inactive response ratio0.10.10.2-0.40.00.1-0.3
Condit. Reinf. active responses0.50.60.90.70.70.9-0.7
Condit. Reinf. inactive responses0.20.30.70.80.50.4-0.2
Incentive salience index mean0.91.21.80.71.11.3-1.1
Condit. Reinf. lever presses0.40.60.80.50.70.9-0.9
Condit. Reinf. active minus inactive responses0.40.50.9-0.8-0.7-1.00.3
Condit. Reinf. active-inactive response ratio3.13.54.1-1.9-2.0-2.01.6
Condit. Reinf. active responses0.10.10.2-0.2-0.1-0.4-0.4
Condit. Reinf. inactive responses1.62.13.21.31.51.1-1.8
Condit. Reinf. lever presses0.10.20.6-0.10.1-0.3-0.8
Condit. Reinf. lever reinforcers received0.10.10.30.20.2-0.3-0.5
Conditioned reinforcement - actives0.81.41.8-1.2-1.3-0.91.3
Conditioned reinforcement - inactives0.30.40.50.70.60.7-0.7
Conditioned locomotion0.10.10.3-0.4-0.20.20.5
Patch foraging indifference point 0 sec0.20.30.8-0.2-0.4-0.90.6
Patch foraging indifference point AUC1.11.63.30.91.30.9-1.8
Delay disc. indifference point, 0s delay1.82.02.31.41.51.5-1.2
Delay disc. indifference point, 16s delay6.77.411.72.32.43.4-2.6
Delay disc. indifference point, 2s delay0.20.20.4-0.6-0.6-0.1-0.5
Delay disc. indifference point, 24s delay2.42.74.21.21.32.0-1.9
Delay disc. indifference point, 4s delay0.40.40.80.10.30.8-0.9
Delay disc. indifference point, 8s delay0.70.81.40.40.71.2-1.1
Indifference point function ln k0.81.41.7-1.2-1.1-1.01.3
Indifference point function log k0.81.41.7-1.2-1.1-1.01.3
Patch foraging total patch changes 0 sec0.10.20.5-0.0-0.3-0.70.6
Patch foraging total patch changes 12 sec1.62.03.11.41.60.8-1.8
Patch foraging total patch changes 18 sec0.10.20.3-0.4-0.3-0.60.3
Patch foraging total patch changes 24 sec0.00.10.20.40.40.10.1
Patch foraging total patch changes 6 sec0.10.20.40.60.4-0.1-0.2
Patch foraging time to switch 0 sec1.12.33.8-1.1-1.7-1.12.0
Patch foraging water rate 0 sec0.10.30.8-0.10.50.1-0.9
Patch foraging water rate 12 sec0.51.02.80.40.70.7-1.7
Patch foraging water rate 18 sec0.50.71.60.40.80.7-1.3
Patch foraging water rate 24 sec0.00.00.00.10.0-0.1-0.2
Patch foraging water rate 6 sec0.50.81.8-0.10.51.0-1.3
Seeking ratio, delayed vs. immediate footshock0.20.20.60.10.20.3-0.8
Distance traveled before self-admin1.01.31.7-1.3-1.3-1.10.7
Distance traveled after self-admin1.92.42.9-1.7-1.6-1.31.5
Extensor digitorum longus weight0.41.74.4-2.1-1.2-0.9-0.1
Bone: elastic displacement0.40.50.70.30.80.8-0.7
Bone: elastic work0.10.10.3-0.5-0.3-0.5-0.1
Bone: endosteal estimation6.614.418.2-4.3-4.0-4.12.7
Bone: endosteal perimeter3.88.29.6-3.1-3.1-3.02.1
Epididymis fat weight0.10.51.31.20.50.10.5
Delta time in closed arm before/after self-admin0.00.00.1-0.10.00.00.2
Delta time in open arm before/after self-admin1.71.72.8-0.5-1.2-1.71.4
Diff in mean of infusions in LGA sessions0.91.21.5-1.2-1.1-0.81.1
Delay discount exponential model param1.71.83.1-0.7-0.9-1.71.8
Extinction: sum of active levers before priming1.31.42.1-0.8-1.4-1.11.4
Active lever presses in extinction session 60.10.10.20.10.30.4-0.2
Bone: final force0.00.00.10.20.1-0.1-0.3
Bone: final moment0.00.10.20.30.2-0.1-0.4
Food consumed during 24 hour testing period1.42.04.0-2.0-1.3-1.20.7
Glucose1.62.44.1-1.2-1.5-1.42.0
Heart weight0.10.10.4-0.20.20.7-0.1
Delay discount hyperbolic model param1.41.52.7-0.5-0.8-1.61.6
Intermittent access intake day 1-15 change0.10.20.50.70.20.5-0.1
Intermittent access intake escalation0.20.30.70.80.40.6-0.3
Intermittent access intake escalation 20.10.10.20.40.20.5-0.1
Intermitt. access day 1 inactive lever presses0.31.11.60.91.10.9-1.3
Intermitt. access day 15 inactive lever presses0.10.10.30.60.30.1-0.1
Intermitt. access escalation Index0.20.30.8-0.20.40.9-0.3
Intermittent access day 1 total infusions1.52.43.7-1.4-1.6-1.21.9
Intermittent access day 15 total infusions0.81.22.4-0.7-1.2-0.71.6
Intermittent access terminal intake (last 3 days)1.21.62.6-1.2-1.3-0.61.6
Intermittent access total infusions1.61.82.6-1.3-1.4-1.11.6
Intermittent access day 1 locomotion0.81.01.3-0.9-1.1-0.81.2
Intermittent access day 15 total locomotion0.00.10.20.30.10.50.2
Intermittent access total locomotion0.60.70.8-0.8-0.9-0.80.8
Intermittent access standard deviation0.10.20.30.60.20.20.5
Left kidney weight0.10.61.1-1.1-0.6-0.8-0.4
Right kidney weight0.10.50.9-1.0-0.4-0.5-0.7
Cocaine induced anxiety1.31.82.6-1.4-1.6-1.11.2
Post-drug Anxiety0.20.30.4-0.5-0.6-0.60.2
Baseline Anxiety2.93.34.62.02.11.3-1.8
Tail length1.55.86.62.42.62.1-2.6
Length with tail0.31.53.10.91.30.6-1.8
Length without tail0.10.41.0-1.0-0.5-0.7-0.3
Times rat made contact with spout0.30.31.00.20.50.4-1.0
Lifetime Intake1.62.02.5-1.3-1.5-1.21.6
Liver weight, left0.30.40.6-0.8-0.8-0.60.3
Liver weight, right0.20.40.9-0.4-0.8-0.90.2
Locomotor activity0.00.00.1-0.00.1-0.30.0
Locomotor testing distance0.00.00.0-0.00.10.0-0.1
Locomotor testing rearing0.10.20.4-0.3-0.5-0.70.4
Locomotion in novel chamber1.11.41.81.21.01.3-1.2
Locomotion in novel chamber post-restriction0.10.10.2-0.5-0.1-0.20.3
Fecal boli incidents, locomotor time 10.40.61.3-1.2-1.0-0.40.4
Change in fecal boli incidents, locomotor task0.10.10.30.2-0.1-0.6-0.3
Time >=10cm from walls, locomotor time 11.71.82.6-1.6-1.5-0.81.3
Bouts of movement, locomotor time 110.311.814.63.43.43.8-3.1
Total resting periods, locomotor time 18.79.711.93.03.03.4-2.9
Rest time, locomotor task time 12.02.53.81.51.32.0-1.5
Distance moved, locomotor task time 10.00.10.1-0.20.0-0.30.3
Vertical activity count, locomotor time 10.00.10.1-0.2-0.2-0.40.3
Time >=10cm from walls, locomotor time 20.40.51.0-0.7-1.0-0.50.6
Bouts of movement, locomotor time 24.06.47.62.82.72.7-1.9
Total resting periods, locomotor time 23.76.57.82.72.72.8-1.9
Rest time, locomotor task time 23.14.04.92.21.92.2-1.6
Distance moved, locomotor task time 20.00.00.1-0.00.2-0.3-0.3
Vertical activity count, locomotor time 20.50.71.3-1.1-0.8-0.90.4
Light reinforcement 10.81.93.31.21.41.8-1.1
Light reinforcement 20.00.00.00.00.20.1-0.2
Bone: marrow area6.614.418.2-4.3-4.0-4.02.6
Bone: maximum diameter2.95.57.3-2.7-2.5-2.51.3
Bone: maximum force0.10.20.4-0.5-0.4-0.6-0.1
Bone: maximum moment0.10.20.3-0.4-0.3-0.6-0.2
Mean time between licks in bursts0.30.60.90.81.00.8-0.6
Mean num. licks in bursts0.50.81.10.81.00.8-1.0
Cd content in liver0.20.20.90.3-0.2-0.10.9
Co content in liver2.93.44.21.81.92.0-1.6
Cu content in liver0.00.00.00.10.1-0.1-0.2
Fe content in liver0.00.10.10.20.1-0.3-0.3
K content in liver0.10.10.1-0.4-0.1-0.40.1
Mg content in liver0.60.61.0-0.9-0.6-1.00.3
Mn content in liver0.20.30.4-0.6-0.5-0.60.2
Na content in liver0.30.30.6-0.7-0.6-0.8-0.0
Rb content in liver0.30.30.8-0.1-0.4-0.90.6
Se content in liver0.60.71.4-0.5-0.7-1.20.9
Sr content in liver0.10.10.30.60.20.10.3
Zn content in liver1.92.13.1-1.4-1.4-1.11.8
Bone: minimum diameter0.61.11.9-0.8-1.1-1.40.8
Time in familiar zone, hab. session 10.00.00.1-0.0-0.1-0.3-0.1
Time in novel zone, hab. session 10.10.10.40.00.30.7-0.2
Total zone transitions, hab. session 12.12.94.82.21.71.6-1.1
Total locomotion distance, hab. session 13.65.18.42.92.32.1-1.6
Locomotion velocity, hab. session 13.54.98.12.92.32.0-1.6
Time in familiar zone, hab. session 20.80.91.30.81.00.8-1.2
Time in novel zone, hab. session 22.72.73.3-1.7-1.8-1.41.6
Total zone transitions, hab. session 23.54.55.32.32.31.9-2.0
Total locomotion distance, hab. session 26.18.010.83.33.12.7-2.1
Locomotion velocity, hab. session 26.08.011.33.43.12.6-2.0
Novel to familiar place preference ratio0.50.51.3-0.10.61.1-0.7
Novelty place preference0.30.30.6-0.60.20.8-0.4
Time in novel zone, NPP test0.30.30.9-0.9-0.10.6-0.2
Total zone transitions, NPP test2.84.15.12.32.21.9-1.6
Total locomotion distance, NPP test3.14.25.82.42.22.1-1.3
Locomotion velocity, NPP test3.24.57.42.72.31.9-1.2
Intraocular pressure0.60.91.3-0.8-1.0-1.10.7
Delta distance traveled before/after self-admin0.20.20.5-0.4-0.3-0.20.7
Delta ambulatory time before/after self-admin0.60.71.4-0.9-0.7-0.61.2
Parametrial fat weight0.40.91.1-0.8-1.0-0.91.0
Pavlov. Cond. lever latency0.10.10.2-0.3-0.3-0.50.3
Pavlov. Cond. magazine entry latency0.10.10.20.10.10.40.5
Pavlov. Cond. change in total contacts0.40.40.70.70.60.8-0.1
Pavlov. Cond. index score0.00.00.20.10.10.40.1
Pavlov. Cond. latency score0.10.10.40.30.30.6-0.1
Pavlov. Cond. lever contacts0.00.00.10.0-0.00.20.3
Pavlov. Cond. magazine entry number0.00.00.20.10.1-0.1-0.4
Pavlov. Cond. intertrial magazine entries0.40.50.8-0.5-0.7-0.90.6
Pavlov. Cond. lever-magazine prob. diff.0.10.10.30.00.10.50.0
Pavlov. Cond. response bias0.10.10.3-0.2-0.20.10.5
Pavlov. Cond. lever latency0.30.41.10.60.51.00.4
Pavlov. Cond. magazine entry latency0.10.10.50.70.1-0.1-0.3
Pavlov. Cond. change in total contacts0.20.31.1-0.1-0.3-1.0-0.4
Pavlov. Cond. index score0.30.41.2-0.3-0.6-1.10.0
Pavlov. Cond. latency score0.30.41.3-0.3-0.6-1.10.0
Pavlov. Cond. lever contacts0.50.71.4-0.8-0.8-1.2-0.2
Pavlov. Cond. magazine entry number0.91.22.40.51.21.6-0.7
Pavlov. Cond. intertrial magazine entries0.00.00.10.10.40.2-0.1
Pavlov. Cond. lever-magazine prob. diff.0.20.20.7-0.1-0.4-0.8-0.3
Pavlov. Cond. response bias0.30.41.0-0.5-0.6-1.0-0.2
Time in closed arm before self-admin1.72.23.2-1.8-1.5-1.61.0
Time in closed arm after self-admin0.00.00.10.10.3-0.20.1
Time in open arm before self-admin0.70.82.00.60.91.4-0.4
Time in open arm after self-admin3.43.74.7-1.6-2.1-1.92.2
Bone: periosteal estimation4.69.811.9-3.3-3.3-3.52.2
Bone: periosteal perimeter2.84.86.1-2.3-2.4-2.51.5
Bone: post-yield work0.30.51.1-1.1-0.7-0.5-0.0
Progressive ratio test 1 active lever presses1.31.62.0-1.4-1.3-1.01.3
Progressive ratio test 1 breakpoint1.41.72.1-1.5-1.4-1.11.3
Progressive ratio test 1 inactive lever presses0.20.20.8-0.2-0.4-0.9-0.0
Progressive ratio test 2 active lever presses0.10.20.3-0.3-0.4-0.50.3
Progressive ratio test 2 breakpoint0.10.10.2-0.2-0.2-0.40.1
Progressive ratio test 2 inactive lever presses0.91.52.1-0.9-1.2-1.41.2
Incentive Sensitization - Responses0.10.20.40.60.50.0-0.5
Incentive Sensitization - Breakpoint0.30.40.70.80.70.3-0.7
Sum of active levers in priming session hrs 5-60.10.10.2-0.2-0.5-0.00.4
Progressive ratio0.10.10.4-0.20.10.60.3
Food seeking constrained by brief footshock0.20.30.9-0.5-0.20.2-1.0
Seeking ratio, punishment vs. effort0.20.20.70.0-0.0-0.6-0.8
Retroperitoneal fat weight0.10.31.01.00.3-0.1-0.1
Reaction time number correct0.10.20.30.20.40.6-0.4
Reaction time mean minus median0.30.81.3-0.5-0.9-0.91.2
Reaction time mean minus median AUC0.40.92.0-0.5-0.9-0.81.4
Reaction time num false alarms0.40.50.90.3-0.5-0.90.9
Reaction time num false alarms AUC0.40.61.10.1-0.7-1.11.0
Reaction time trials correct on left0.10.20.30.20.40.6-0.4
Reaction time trials on left0.10.10.30.10.40.5-0.3
Reaction time mean0.61.01.5-0.5-1.0-1.01.2
Reaction time mean AUC0.71.11.5-0.6-1.1-1.11.2
Median of all reaction times0.30.50.8-0.2-0.7-0.70.9
Reaction time omissions0.10.20.40.50.60.3-0.2
Reaction time false alarm rate0.50.71.20.1-0.7-1.11.0
Reaction time premature initiation rate0.10.10.4-0.6-0.3-0.10.3
Reaction time premature initiations0.10.10.3-0.5-0.20.00.2
Std. dev. reaction times0.71.42.1-0.8-1.1-1.31.4
Reaction time trials completed0.10.10.30.10.40.5-0.3
Reaction time trials AUC0.10.20.40.20.50.6-0.4
Run reversals in cocaine runway, females0.20.20.20.50.40.3-0.5
Run reversals in cocaine runway, males0.20.20.4-0.1-0.1-0.6-0.5
Latency to leave start box in cocaine runway0.40.50.60.50.80.8-0.7
Latency to leave start box in cocaine runway, F0.70.81.00.71.01.0-0.9
Latency to leave start box in cocaine runway, M0.20.20.30.40.40.3-0.6
Std. dev. time between licks in bursts2.73.75.31.52.31.7-2.1
Total sessions with >9 infusions1.41.82.2-1.3-1.4-1.51.0
Short access day 1 total inactive lever presses0.10.10.4-0.2-0.0-0.4-0.6
Short access day 10 total inactive lever presses0.71.82.41.31.61.2-1.3
Short access day 1 total infusions0.60.81.1-0.8-1.0-0.81.0
Short access day 10 total infusions3.03.84.5-1.9-2.0-1.72.1
Short access total infusions2.93.74.4-1.8-2.0-1.72.1
Short access day 1 locomotion0.60.71.2-1.1-1.0-0.60.6
Short access day 10 total locomotion0.20.30.5-0.4-0.7-0.70.5
Short access total locomotion0.50.60.9-0.8-0.9-0.60.7
One hour access (0.3 mA shock)0.40.41.1-0.3-0.7-0.31.0
Compulsive drug intake0.50.60.9-0.4-0.8-0.91.0
One hour access (shock baseline)0.00.00.1-0.1-0.20.10.3
Social response proportion0.81.02.11.41.00.5-0.6
Social responses1.31.72.71.71.31.1-1.0
Social time0.00.00.10.40.10.00.3
Soleus weight1.13.15.1-2.3-1.7-2.00.6
Bone: stiffness0.00.10.20.1-0.1-0.4-0.2
Tibialis anterior weight3.210.816.7-4.1-3.5-3.22.0
Time to tail flick, vehicle, before self-admin0.30.30.6-0.5-0.6-0.30.8
Time to tail flick, vehicle, after self-admin0.30.30.8-0.9-0.6-0.50.2
Time to tail flick, test, before self-admin0.00.00.1-0.20.2-0.20.3
Time to tail flick, test, after self-admin0.60.61.30.30.61.1-0.8
Delta time to tail flick, vehicle, before/after SA0.10.10.2-0.10.2-0.0-0.4
Delta time to tail flick, test, before/after SA0.10.10.1-0.3-0.30.1-0.3
Tibia length1.13.14.0-2.0-1.9-2.01.0
Ambulatory time before self-admin0.20.40.6-0.8-0.7-0.50.3
Ambulatory time after self-admin1.92.32.5-1.6-1.5-1.41.5
Bone: tissue strength2.52.53.41.91.71.3-1.4
Total heroin consumption0.20.20.7-0.1-0.2-0.30.9
Bone: trabecular number0.20.40.8-0.5-0.6-0.90.3
Bone: trabecular spacing4.15.47.12.72.42.4-1.8
Bone: trabecular thickness0.30.40.6-0.6-0.6-0.80.5
Bone: trabecular tissue density0.20.30.8-0.00.50.9-0.5
Water consumed over 24 hours0.30.41.0-1.0-0.3-0.1-0.8
Number of responses in last shaping day9.810.713.6-3.6-3.7-3.22.5