Gdf11

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Liver gene expression Gdf11 0.11 0.08 7.5e-08 0.07 0.06 0.06 0.06 6.3e-08 8.9e-07 6.3e-07 1.3e-07
2 pVTA gene expression Gdf11 0.11 0.06 3.1e-06 0.06 0.06 0.07 0.07 8.2e-06 5.7e-06 4.0e-06 3.6e-06
3 NAcc gene expression Gdf11 0.08 0.04 1.6e-09 0.05 0.06 0.06 0.06 4.5e-08 1.6e-09 3.4e-09 5.0e-09
4 Brain gene expression Gdf11 0.07 0.05 1.1e-06 0.06 0.07 0.06 0.06 1.1e-06 7.9e-07 1.1e-06 1.2e-06

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density1.73.24.90.9-1.8-2.0-2.2
Area under the delay curve0.10.10.40.1-0.6-0.4-0.0
BMI with tail4.816.827.85.3-4.6-3.52.4
BMI without tail0.73.96.22.5-2.2-1.61.3
Body weight0.62.83.71.9-1.8-1.11.7
Weight adjusted by age0.00.10.2-0.40.40.40.2
Bone surface2.95.612.80.8-1.7-2.5-3.6
Bone volume3.16.312.11.1-2.1-2.7-3.5
Breakpoint value in progressive ratio session0.61.01.9-1.11.41.0-0.2
Number of licking bursts0.61.82.81.5-1.3-0.61.7
Context. condit. distance diff. score0.10.20.30.6-0.4-0.30.3
Locomotion velocity, session 11.31.52.30.5-1.3-1.5-1.2
Locomotion distance, session 11.01.33.20.1-0.7-1.2-1.8
Locomotion velocity, session 21.31.65.3-0.60.0-0.7-2.3
Locomotion distance, session 21.42.05.7-1.50.3-0.2-2.4
Locomotion velocity, session 33.03.56.2-2.52.11.6-0.9
Locomotion distance, session 30.10.10.2-0.40.30.40.2
Stereotopy head waving bouts, day 33.13.76.1-2.52.01.4-1.6
Stereotopy head waving duration, day 32.22.73.7-1.91.91.2-1.4
Locomotion velocity, session 70.10.10.4-0.0-0.0-0.3-0.6
Locomotion distance, session 70.20.30.90.10.30.50.9
Stereotopy head waving bouts, day 70.70.82.5-0.7-0.1-0.4-1.6
Stereotopy head waving duration, day 70.91.13.4-0.6-0.3-0.8-1.8
Locomotion velocity, session 81.21.54.6-0.8-0.3-0.8-2.1
Locomotion distance, session 80.20.20.6-0.60.1-0.0-0.8
Degree of sensitization distance0.40.40.80.9-0.7-0.60.2
Degree of sensitization stereotypy0.60.71.10.4-1.0-1.0-0.8
Conditioned locomotion0.80.93.10.4-0.10.51.8
Cocaine response after cond. corrected0.91.33.41.2-0.60.01.8
Cocaine response after cond. not corrected1.01.44.11.2-0.40.22.0
Cocaine response before conditioning0.30.30.5-0.70.70.4-0.5
Saline control response0.30.41.20.5-0.40.01.1
Bone: connectivity density0.91.52.50.6-1.1-1.4-1.6
Bone: cortical apparent density0.71.12.21.5-1.1-0.90.3
Bone: cortical area1.83.04.01.7-1.8-2.0-1.3
Bone: cortical porosity0.30.30.50.5-0.3-0.6-0.7
Bone: cortical porosity0.80.91.20.9-0.7-1.1-1.1
Bone: cortical thickness1.82.94.52.1-1.9-1.9-0.5
Bone: cortical thickness0.40.50.90.8-0.5-0.11.0
Bone: cortical tissue density0.50.81.61.3-1.0-0.80.3
Condit. Reinf. active minus inactive responses1.11.31.9-1.41.30.9-0.8
Condit. Reinf. active-inactive response ratio0.50.50.9-0.61.00.80.2
Condit. Reinf. active responses1.31.72.8-1.51.10.6-1.7
Condit. Reinf. inactive responses0.81.03.1-1.00.2-0.2-1.8
Incentive salience index mean0.60.81.8-1.00.50.1-1.4
Condit. Reinf. lever presses0.91.33.3-0.2-0.8-1.1-1.8
Condit. Reinf. active minus inactive responses2.23.45.2-2.02.32.00.2
Condit. Reinf. active-inactive response ratio1.72.73.8-1.41.82.01.3
Condit. Reinf. active responses1.31.82.9-1.61.71.3-0.6
Condit. Reinf. inactive responses0.20.31.1-0.40.3-0.1-1.0
Condit. Reinf. lever presses2.23.24.5-2.12.11.9-0.1
Condit. Reinf. lever reinforcers received1.21.72.8-1.51.71.4-0.2
Conditioned reinforcement - actives0.00.10.30.20.60.2-0.1
Conditioned reinforcement - inactives0.20.50.80.60.70.60.9
Conditioned locomotion1.31.93.4-1.21.80.9-1.4
Patch foraging indifference point 0 sec1.64.48.12.8-2.3-2.10.4
Patch foraging indifference point AUC0.30.71.4-1.20.90.9-0.1
Delay disc. indifference point, 0s delay3.74.16.61.7-2.6-2.4-1.1
Delay disc. indifference point, 16s delay0.10.10.2-0.40.1-0.0-0.3
Delay disc. indifference point, 2s delay0.80.91.60.7-1.3-1.1-0.4
Delay disc. indifference point, 24s delay0.20.30.70.4-0.8-0.60.2
Delay disc. indifference point, 4s delay0.40.51.2-0.2-0.5-0.6-1.1
Delay disc. indifference point, 8s delay0.10.20.60.1-0.20.20.8
Indifference point function ln k0.00.10.20.50.1-0.00.2
Indifference point function log k0.00.10.20.50.1-0.00.2
Patch foraging total patch changes 0 sec1.33.87.12.7-2.1-1.90.4
Patch foraging total patch changes 12 sec0.91.22.01.4-1.1-0.71.1
Patch foraging total patch changes 18 sec0.00.10.20.1-0.4-0.3-0.1
Patch foraging total patch changes 24 sec0.20.71.20.9-1.1-1.0-0.1
Patch foraging total patch changes 6 sec1.22.13.81.9-1.5-1.50.2
Patch foraging time to switch 0 sec0.31.11.70.8-1.3-1.2-0.7
Patch foraging water rate 0 sec0.20.61.90.60.10.41.4
Patch foraging water rate 12 sec0.20.72.10.80.10.31.5
Patch foraging water rate 18 sec1.43.15.2-0.61.72.02.3
Patch foraging water rate 24 sec2.23.19.90.50.61.33.1
Patch foraging water rate 6 sec2.02.94.4-1.12.12.11.4
Seeking ratio, delayed vs. immediate footshock0.60.91.5-1.00.90.4-1.2
Distance traveled before self-admin0.51.11.8-1.31.20.9-0.6
Distance traveled after self-admin0.00.00.0-0.2-0.1-0.00.0
Extensor digitorum longus weight2.610.517.44.2-3.2-1.93.2
Bone: elastic displacement0.00.00.00.1-0.0-0.1-0.1
Bone: elastic work1.11.42.11.3-1.4-1.3-0.3
Bone: endosteal estimation0.51.31.81.4-1.2-1.3-0.5
Bone: endosteal perimeter0.30.72.4-0.30.0-0.4-1.5
Epididymis fat weight0.21.11.4-0.81.11.21.0
Delta time in closed arm before/after self-admin1.91.75.20.60.61.02.3
Delta time in open arm before/after self-admin0.60.71.30.7-1.2-0.70.6
Diff in mean of infusions in LGA sessions1.01.82.8-1.61.71.3-0.5
Delay discount exponential model param0.10.10.20.00.50.30.0
Extinction: sum of active levers before priming1.52.23.2-1.61.81.70.4
Active lever presses in extinction session 60.10.10.2-0.30.20.0-0.5
Bone: final force3.65.98.32.7-2.9-2.7-0.8
Bone: final moment3.65.88.22.6-2.9-2.7-0.8
Food consumed during 24 hour testing period0.20.30.50.6-0.7-0.50.2
Glucose0.91.42.11.4-1.5-1.00.9
Heart weight0.50.81.2-0.81.11.00.4
Delay discount hyperbolic model param0.30.40.8-0.40.90.70.2
Intermittent access intake day 1-15 change0.31.73.7-0.91.91.40.4
Intermittent access intake escalation0.31.63.5-0.81.91.40.5
Intermittent access intake escalation 20.71.22.5-1.01.61.20.2
Intermitt. access day 1 inactive lever presses0.22.43.3-1.21.81.81.2
Intermitt. access day 15 inactive lever presses0.21.21.9-1.21.41.10.0
Intermitt. access escalation Index0.20.81.10.6-0.8-1.0-1.0
Intermittent access day 1 total infusions0.00.10.20.5-0.0-0.10.2
Intermittent access day 15 total infusions0.10.10.40.20.60.2-0.2
Intermittent access terminal intake (last 3 days)0.10.20.50.20.4-0.1-0.7
Intermittent access total infusions0.10.10.30.60.1-0.2-0.2
Intermittent access day 1 locomotion0.10.30.5-0.10.50.50.7
Intermittent access day 15 total locomotion0.31.12.6-0.51.61.20.3
Intermittent access total locomotion0.30.40.8-0.40.90.70.2
Intermittent access standard deviation0.20.81.8-0.61.30.5-1.0
Left kidney weight0.00.10.2-0.20.10.20.4
Right kidney weight0.10.71.3-1.10.80.90.3
Cocaine induced anxiety0.41.03.1-0.90.3-0.1-1.8
Post-drug Anxiety1.11.24.0-0.2-0.3-0.8-2.0
Baseline Anxiety0.00.00.00.2-0.1-0.10.0
Tail length1.89.416.0-4.03.43.0-1.0
Length with tail1.35.68.5-2.92.72.5-0.1
Length without tail0.10.30.80.6-0.3-0.10.9
Times rat made contact with spout0.50.61.20.9-0.6-0.31.1
Lifetime Intake0.40.51.51.2-0.2-0.6-0.2
Liver weight, left0.20.40.50.7-0.7-0.50.5
Liver weight, right0.20.30.5-0.70.40.60.4
Locomotor activity1.42.34.0-2.01.30.7-1.7
Locomotor testing distance0.51.11.9-1.30.90.4-1.4
Locomotor testing rearing0.00.10.1-0.30.30.30.4
Locomotion in novel chamber0.10.10.30.50.0-0.2-0.0
Locomotion in novel chamber post-restriction1.13.35.7-2.42.01.7-0.9
Fecal boli incidents, locomotor time 10.20.51.70.5-0.40.01.3
Change in fecal boli incidents, locomotor task0.70.72.5-0.3-0.2-0.6-1.6
Time >=10cm from walls, locomotor time 11.21.52.21.0-1.4-1.5-0.9
Bouts of movement, locomotor time 10.50.60.9-0.91.00.8-0.1
Total resting periods, locomotor time 10.91.01.7-1.31.21.0-0.4
Rest time, locomotor task time 10.20.30.7-0.70.20.0-0.8
Distance moved, locomotor task time 10.61.72.61.3-1.4-1.6-0.9
Vertical activity count, locomotor time 10.10.71.71.3-0.6-0.60.5
Time >=10cm from walls, locomotor time 20.20.51.01.0-0.5-0.21.0
Bouts of movement, locomotor time 20.20.51.5-0.1-0.3-0.7-1.2
Total resting periods, locomotor time 20.20.72.00.0-0.4-0.8-1.4
Rest time, locomotor task time 20.20.40.9-0.0-0.5-0.6-0.9
Distance moved, locomotor task time 20.20.30.6-0.10.50.60.8
Vertical activity count, locomotor time 20.30.82.50.8-0.10.21.6
Light reinforcement 10.83.85.5-2.32.31.5-1.5
Light reinforcement 20.40.91.4-1.11.20.8-0.6
Bone: marrow area0.51.21.61.3-1.2-1.2-0.5
Bone: maximum diameter0.51.03.7-0.2-0.1-0.6-1.9
Bone: maximum force2.85.58.02.7-2.8-2.6-0.5
Bone: maximum moment2.95.57.92.6-2.8-2.6-0.5
Mean time between licks in bursts0.10.91.6-1.01.31.0-0.3
Mean num. licks in bursts0.10.40.6-0.80.70.3-0.7
Cd content in liver0.20.20.4-0.40.60.4-0.4
Co content in liver2.32.74.0-1.92.01.8-0.1
Cu content in liver1.01.21.71.1-0.9-1.3-1.0
Fe content in liver0.10.10.30.40.00.10.5
K content in liver0.50.51.5-0.60.3-0.1-1.2
Mg content in liver0.50.61.0-1.00.60.3-1.0
Mn content in liver1.92.17.1-0.6-0.2-1.0-2.7
Na content in liver0.40.40.70.4-0.7-0.9-0.6
Rb content in liver1.21.41.90.9-1.0-1.4-1.3
Se content in liver0.00.00.0-0.10.10.1-0.1
Sr content in liver0.60.50.9-0.41.00.90.4
Zn content in liver4.35.07.2-2.22.72.70.9
Bone: minimum diameter0.71.31.61.0-1.1-1.3-1.1
Time in familiar zone, hab. session 13.43.76.1-2.52.22.0-0.2
Time in novel zone, hab. session 13.74.25.62.3-2.3-2.4-0.6
Total zone transitions, hab. session 10.70.92.7-0.3-0.5-0.8-1.7
Total locomotion distance, hab. session 11.52.27.2-0.9-0.2-0.8-2.7
Locomotion velocity, hab. session 11.21.65.2-1.10.2-0.4-2.3
Time in familiar zone, hab. session 24.65.27.6-2.62.72.50.1
Time in novel zone, hab. session 25.45.98.32.8-2.9-2.7-0.3
Total zone transitions, hab. session 22.33.04.61.3-1.9-2.1-1.6
Total locomotion distance, hab. session 20.50.72.0-0.3-0.4-0.7-1.4
Locomotion velocity, hab. session 20.81.13.0-0.3-0.6-1.0-1.7
Novel to familiar place preference ratio3.14.15.82.1-2.4-2.4-0.7
Novelty place preference2.33.04.21.8-2.0-2.0-0.8
Time in novel zone, NPP test2.73.34.52.0-2.1-2.1-0.6
Total zone transitions, NPP test0.91.42.20.9-1.5-1.4-0.7
Total locomotion distance, NPP test0.81.11.60.5-1.1-1.2-1.1
Locomotion velocity, NPP test0.50.81.40.1-0.8-1.0-1.2
Intraocular pressure1.11.72.5-1.01.21.61.4
Delta distance traveled before/after self-admin0.40.40.70.7-0.8-0.50.5
Delta ambulatory time before/after self-admin0.50.81.50.9-1.2-1.0-0.1
Parametrial fat weight0.30.81.21.1-1.1-1.00.0
Pavlov. Cond. lever latency0.81.02.2-0.20.81.11.5
Pavlov. Cond. magazine entry latency0.91.11.8-1.41.21.0-0.5
Pavlov. Cond. change in total contacts0.10.20.30.6-0.4-0.3-0.0
Pavlov. Cond. index score0.20.30.9-0.50.1-0.1-1.0
Pavlov. Cond. latency score0.40.51.8-0.4-0.1-0.4-1.3
Pavlov. Cond. lever contacts0.81.01.60.4-1.0-1.1-1.3
Pavlov. Cond. magazine entry number0.40.50.90.9-0.8-0.80.2
Pavlov. Cond. intertrial magazine entries0.50.60.8-0.40.90.90.8
Pavlov. Cond. lever-magazine prob. diff.0.30.30.9-0.60.20.0-0.9
Pavlov. Cond. response bias0.30.30.6-0.80.60.5-0.3
Pavlov. Cond. lever latency0.91.32.41.5-1.2-1.10.6
Pavlov. Cond. magazine entry latency1.11.62.8-1.71.31.1-0.8
Pavlov. Cond. change in total contacts0.40.91.3-1.11.11.0-0.2
Pavlov. Cond. index score1.11.72.8-1.71.51.3-0.5
Pavlov. Cond. latency score1.01.62.9-1.71.31.1-0.8
Pavlov. Cond. lever contacts1.01.52.4-1.61.31.3-0.3
Pavlov. Cond. magazine entry number1.21.62.71.6-1.3-1.10.9
Pavlov. Cond. intertrial magazine entries0.30.61.01.0-0.5-0.31.0
Pavlov. Cond. lever-magazine prob. diff.1.11.82.8-1.71.51.2-0.8
Pavlov. Cond. response bias1.72.43.7-1.91.81.6-0.3
Time in closed arm before self-admin0.50.81.10.6-0.9-1.0-0.9
Time in closed arm after self-admin0.20.20.80.90.1-0.00.4
Time in open arm before self-admin0.10.10.20.10.50.3-0.0
Time in open arm after self-admin0.91.01.41.1-1.2-0.61.1
Bone: periosteal estimation1.53.54.71.9-2.0-2.2-1.3
Bone: periosteal perimeter0.71.32.80.6-0.8-1.2-1.7
Bone: post-yield work0.30.50.80.9-0.8-0.70.1
Progressive ratio test 1 active lever presses0.10.20.50.7-0.3-0.30.3
Progressive ratio test 1 breakpoint0.10.20.50.7-0.2-0.30.3
Progressive ratio test 1 inactive lever presses0.10.30.9-0.31.00.5-0.3
Progressive ratio test 2 active lever presses0.10.10.3-0.10.60.2-0.2
Progressive ratio test 2 breakpoint0.10.10.4-0.20.60.2-0.3
Progressive ratio test 2 inactive lever presses0.10.30.40.6-0.1-0.6-0.6
Incentive Sensitization - Responses0.10.40.6-0.80.80.6-0.1
Incentive Sensitization - Breakpoint0.20.40.7-0.80.80.5-0.3
Sum of active levers in priming session hrs 5-60.20.20.3-0.40.50.50.1
Progressive ratio0.20.71.51.2-0.4-0.31.0
Food seeking constrained by brief footshock1.01.33.0-1.71.01.1-0.3
Seeking ratio, punishment vs. effort0.81.84.2-2.11.11.1-0.7
Retroperitoneal fat weight0.94.27.32.5-1.5-0.72.7
Reaction time number correct0.20.72.30.7-0.30.11.5
Reaction time mean minus median0.10.81.6-1.30.90.7-0.8
Reaction time mean minus median AUC0.21.34.0-1.00.0-0.4-2.0
Reaction time num false alarms0.30.50.80.9-0.7-0.40.6
Reaction time num false alarms AUC0.20.40.70.8-0.5-0.20.9
Reaction time trials correct on left0.20.72.30.7-0.30.11.5
Reaction time trials on left0.20.72.00.7-0.30.11.4
Reaction time mean0.40.92.3-1.00.2-0.1-1.5
Reaction time mean AUC0.20.61.8-0.6-0.1-0.4-1.3
Median of all reaction times0.40.61.9-0.7-0.0-0.3-1.4
Reaction time omissions0.20.30.80.3-0.4-0.6-0.9
Reaction time false alarm rate0.20.20.40.5-0.6-0.5-0.1
Reaction time premature initiation rate1.52.43.4-1.71.81.70.5
Reaction time premature initiations0.82.53.2-1.41.71.81.4
Std. dev. reaction times0.20.51.4-0.80.30.0-1.2
Reaction time trials completed0.20.72.00.7-0.30.11.4
Reaction time trials AUC0.20.92.80.7-0.30.21.7
Run reversals in cocaine runway, females1.21.32.4-1.50.70.4-1.5
Run reversals in cocaine runway, males1.01.11.9-1.20.80.5-1.4
Latency to leave start box in cocaine runway1.11.52.20.4-1.3-1.5-1.3
Latency to leave start box in cocaine runway, F2.02.63.70.5-1.8-1.9-1.8
Latency to leave start box in cocaine runway, M0.10.10.2-0.10.30.30.4
Std. dev. time between licks in bursts0.40.82.6-0.50.1-0.4-1.6
Total sessions with >9 infusions0.40.51.41.20.0-0.5-0.3
Short access day 1 total inactive lever presses0.40.81.5-0.81.21.00.3
Short access day 10 total inactive lever presses0.32.12.9-0.81.71.71.4
Short access day 1 total infusions0.20.41.41.20.2-0.5-0.3
Short access day 10 total infusions0.10.10.40.60.1-0.20.0
Short access total infusions0.50.72.11.5-0.2-0.8-0.3
Short access day 1 locomotion0.50.71.8-0.61.40.9-0.2
Short access day 10 total locomotion1.14.58.7-1.83.02.40.6
Short access total locomotion0.60.82.1-0.61.41.00.1
One hour access (0.3 mA shock)0.10.10.30.30.30.20.6
Compulsive drug intake0.00.00.0-0.1-0.2-0.0-0.2
One hour access (shock baseline)0.10.20.6-0.20.80.40.1
Social response proportion0.40.51.1-1.10.30.1-0.8
Social responses4.45.811.4-3.42.21.5-2.2
Social time0.50.81.11.0-0.8-0.51.0
Soleus weight3.811.117.64.2-3.9-2.91.8
Bone: stiffness3.25.88.42.9-2.8-2.6-0.2
Tibialis anterior weight0.93.04.62.1-2.0-1.51.0
Time to tail flick, vehicle, before self-admin0.50.61.4-0.70.60.2-1.2
Time to tail flick, vehicle, after self-admin0.71.31.9-1.11.11.41.0
Time to tail flick, test, before self-admin0.60.72.5-0.3-0.1-0.5-1.6
Time to tail flick, test, after self-admin0.20.20.30.3-0.3-0.4-0.6
Delta time to tail flick, vehicle, before/after SA0.91.03.40.4-0.40.31.8
Delta time to tail flick, test, before/after SA0.70.81.8-0.30.71.01.3
Tibia length0.71.93.4-1.81.41.4-0.2
Ambulatory time before self-admin0.10.40.6-0.70.80.6-0.2
Ambulatory time after self-admin0.00.00.1-0.0-0.2-0.1-0.0
Bone: tissue strength4.04.27.02.6-2.3-2.10.3
Total heroin consumption1.11.32.4-1.61.00.7-1.1
Bone: trabecular number0.51.03.0-0.3-0.6-0.8-1.7
Bone: trabecular spacing1.82.65.7-0.31.41.72.4
Bone: trabecular thickness4.56.39.61.3-2.3-2.9-3.1
Bone: trabecular tissue density1.93.46.32.5-1.7-1.21.7
Water consumed over 24 hours0.71.31.91.2-1.3-1.4-0.5
Number of responses in last shaping day2.32.96.2-1.52.51.8-0.2