Gadd45b

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 PL gene expression Gadd45b 0.04 0.03 9.4e-06 0.05 0.05 0.05 0.05 2.9e-06 6.1e-06 6.0e-06 2.6e-06
2 Brain gene expression Gadd45b 0.07 0.05 3.1e-06 0.06 0.06 0.05 0.06 7.1e-06 6.9e-06 1.1e-05 6.8e-06
3 NAcc gene expression Gadd45b 0.06 0.05 7.9e-07 0.06 0.05 0.05 0.05 3.0e-07 6.1e-07 2.4e-06 7.1e-07
4 Liver gene expression Gadd45b 0.06 0.05 2.2e-03 0.01 0.01 0.02 0.01 1.1e-02 1.9e-02 4.8e-03 2.9e-02

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density1.01.75.80.70.6-0.6-2.4
Area under the delay curve1.81.92.91.71.4-1.5-0.6
BMI with tail4.915.821.24.54.6-4.6-0.8
BMI without tail1.63.34.31.92.0-2.11.0
Body weight0.93.85.32.12.3-2.3-0.2
Weight adjusted by age0.40.41.40.30.4-0.41.2
Bone surface1.52.610.10.40.3-0.2-3.2
Bone volume1.52.59.60.40.3-0.3-3.1
Breakpoint value in progressive ratio session5.25.86.9-2.6-2.62.51.7
Number of licking bursts0.30.41.4-0.2-0.20.21.2
Context. condit. distance diff. score0.20.30.30.60.6-0.60.2
Locomotion velocity, session 10.50.51.3-0.4-0.50.5-1.1
Locomotion distance, session 11.21.56.10.20.1-0.1-2.5
Locomotion velocity, session 22.42.83.0-1.6-1.71.7-1.7
Locomotion distance, session 21.52.15.5-1.0-1.01.0-2.3
Locomotion velocity, session 35.46.38.2-2.7-2.92.91.2
Locomotion distance, session 30.10.10.20.0-0.00.00.5
Stereotopy head waving bouts, day 33.33.95.3-2.3-2.32.3-0.2
Stereotopy head waving duration, day 34.35.17.0-2.6-2.62.60.3
Locomotion velocity, session 70.50.60.7-0.8-0.70.70.7
Locomotion distance, session 70.30.41.50.10.2-0.21.2
Stereotopy head waving bouts, day 70.40.41.60.30.2-0.2-1.3
Stereotopy head waving duration, day 70.40.51.8-0.1-0.20.2-1.3
Locomotion velocity, session 80.80.93.3-0.3-0.40.4-1.8
Locomotion distance, session 80.20.20.9-0.2-0.20.2-0.9
Degree of sensitization distance0.30.30.50.60.7-0.7-0.2
Degree of sensitization stereotypy2.22.42.81.71.6-1.6-1.3
Conditioned locomotion0.80.91.00.91.0-0.91.0
Cocaine response after cond. corrected3.13.54.32.02.1-2.01.2
Cocaine response after cond. not corrected3.33.64.42.12.1-2.11.3
Cocaine response before conditioning0.30.30.5-0.7-0.70.60.1
Saline control response0.00.00.00.10.2-0.20.1
Bone: connectivity density1.01.63.81.00.9-0.8-1.9
Bone: cortical apparent density0.60.81.01.01.0-1.0-0.3
Bone: cortical area0.91.31.41.11.1-1.1-1.2
Bone: cortical porosity0.30.40.4-0.6-0.60.6-0.6
Bone: cortical porosity0.40.51.90.10.2-0.1-1.4
Bone: cortical thickness1.22.02.31.51.5-1.5-1.0
Bone: cortical thickness0.40.51.6-0.3-0.20.21.3
Bone: cortical tissue density0.40.50.70.80.8-0.8-0.2
Condit. Reinf. active minus inactive responses3.33.75.0-2.1-2.22.20.6
Condit. Reinf. active-inactive response ratio2.42.62.9-1.6-1.71.71.3
Condit. Reinf. active responses2.42.93.9-1.9-2.02.0-0.6
Condit. Reinf. inactive responses0.81.02.5-0.6-0.70.7-1.6
Incentive salience index mean1.41.72.2-1.4-1.51.5-0.5
Condit. Reinf. lever presses1.11.55.50.40.3-0.3-2.3
Condit. Reinf. active minus inactive responses2.73.33.6-1.9-1.91.91.6
Condit. Reinf. active-inactive response ratio0.70.71.8-0.6-0.60.71.3
Condit. Reinf. active responses2.12.93.3-1.8-1.81.81.2
Condit. Reinf. inactive responses0.81.01.2-1.1-1.11.10.6
Condit. Reinf. lever presses2.63.54.0-2.0-1.91.91.6
Condit. Reinf. lever reinforcers received1.92.62.8-1.7-1.71.71.5
Conditioned reinforcement - actives1.51.52.6-1.6-1.21.30.5
Conditioned reinforcement - inactives0.30.40.70.60.8-0.70.3
Conditioned locomotion5.66.89.1-3.0-2.92.91.0
Patch foraging indifference point 0 sec0.20.20.30.50.5-0.5-0.5
Patch foraging indifference point AUC0.80.91.2-1.1-1.01.00.6
Delay disc. indifference point, 0s delay8.79.59.63.13.1-3.1-3.1
Delay disc. indifference point, 16s delay0.10.10.20.50.3-0.4-0.2
Delay disc. indifference point, 2s delay5.15.67.32.72.5-2.6-1.4
Delay disc. indifference point, 24s delay0.60.60.90.90.8-0.90.2
Delay disc. indifference point, 4s delay1.11.11.81.30.9-1.0-0.9
Delay disc. indifference point, 8s delay0.70.71.11.00.9-0.90.2
Indifference point function ln k0.20.20.30.60.5-0.50.2
Indifference point function log k0.20.20.30.60.5-0.50.2
Patch foraging total patch changes 0 sec0.10.10.20.40.4-0.4-0.3
Patch foraging total patch changes 12 sec0.20.20.40.30.4-0.40.6
Patch foraging total patch changes 18 sec1.01.21.6-1.2-1.31.30.5
Patch foraging total patch changes 24 sec0.10.10.1-0.3-0.30.3-0.1
Patch foraging total patch changes 6 sec0.20.20.3-0.6-0.60.5-0.1
Patch foraging time to switch 0 sec2.53.86.31.71.7-1.8-2.5
Patch foraging water rate 0 sec0.91.55.3-0.4-0.50.52.3
Patch foraging water rate 12 sec0.81.23.10.80.8-0.81.8
Patch foraging water rate 18 sec2.53.410.9-0.8-0.91.03.3
Patch foraging water rate 24 sec1.52.18.40.0-0.10.12.9
Patch foraging water rate 6 sec1.62.35.9-1.0-1.01.02.4
Seeking ratio, delayed vs. immediate footshock2.93.44.6-2.1-2.12.10.2
Distance traveled before self-admin0.80.81.00.81.0-0.9-0.9
Distance traveled after self-admin0.30.30.6-0.8-0.60.6-0.1
Extensor digitorum longus weight3.212.617.04.14.1-4.10.2
Bone: elastic displacement0.10.20.2-0.5-0.50.4-0.1
Bone: elastic work0.30.30.40.60.6-0.6-0.4
Bone: endosteal estimation0.20.50.60.80.7-0.7-0.6
Bone: endosteal perimeter0.10.20.3-0.4-0.50.5-0.5
Epididymis fat weight0.30.80.9-0.8-1.01.00.7
Delta time in closed arm before/after self-admin1.11.03.70.30.4-0.41.9
Delta time in open arm before/after self-admin1.21.11.51.21.0-1.1-0.9
Diff in mean of infusions in LGA sessions1.61.82.5-1.4-1.61.50.6
Delay discount exponential model param1.61.72.6-1.6-1.31.40.5
Extinction: sum of active levers before priming1.71.72.3-1.4-1.21.11.5
Active lever presses in extinction session 61.91.82.8-1.7-1.51.40.3
Bone: final force1.42.22.71.61.6-1.5-1.1
Bone: final moment1.11.82.11.41.5-1.4-1.0
Food consumed during 24 hour testing period0.40.40.70.80.7-0.70.2
Glucose1.01.52.11.41.4-1.4-0.1
Heart weight0.60.81.2-0.8-0.80.81.1
Delay discount hyperbolic model param2.32.43.6-1.9-1.61.70.7
Intermittent access intake day 1-15 change5.65.57.6-2.7-2.52.51.3
Intermittent access intake escalation6.66.58.1-2.8-2.62.62.1
Intermittent access intake escalation 28.38.29.9-3.2-3.02.92.4
Intermitt. access day 1 inactive lever presses0.50.51.2-0.6-0.40.41.1
Intermitt. access day 15 inactive lever presses0.50.60.7-0.8-0.80.80.5
Intermitt. access escalation Index0.90.81.70.70.7-0.8-1.3
Intermittent access day 1 total infusions0.00.00.10.20.2-0.1-0.2
Intermittent access day 15 total infusions2.02.33.0-1.7-1.61.61.1
Intermittent access terminal intake (last 3 days)1.01.11.6-1.3-1.11.00.7
Intermittent access total infusions0.20.30.4-0.6-0.50.50.4
Intermittent access day 1 locomotion0.40.40.5-0.7-0.60.70.3
Intermittent access day 15 total locomotion2.83.04.3-2.1-1.91.90.7
Intermittent access total locomotion0.60.71.2-1.1-0.90.90.1
Intermittent access standard deviation2.72.94.0-2.0-1.71.71.2
Left kidney weight0.10.20.6-0.10.0-0.1-0.8
Right kidney weight1.02.73.9-2.0-1.81.80.4
Cocaine induced anxiety0.40.51.3-0.6-0.40.4-1.1
Post-drug Anxiety0.40.51.3-0.5-0.50.5-1.1
Baseline Anxiety0.50.51.1-0.4-0.60.61.1
Tail length2.88.410.6-3.3-3.13.11.8
Length with tail1.34.76.7-2.6-2.42.40.4
Length without tail0.20.41.8-0.00.00.0-1.3
Times rat made contact with spout0.10.20.50.30.3-0.30.7
Lifetime Intake0.10.10.2-0.4-0.20.30.1
Liver weight, left1.62.53.51.91.8-1.8-0.2
Liver weight, right1.62.63.21.71.8-1.8-1.0
Locomotor activity1.93.14.3-2.1-2.01.9-0.6
Locomotor testing distance1.32.13.0-1.7-1.71.7-0.1
Locomotor testing rearing0.20.30.9-0.4-0.30.31.0
Locomotion in novel chamber0.30.40.5-0.7-0.60.50.6
Locomotion in novel chamber post-restriction1.01.21.4-1.1-1.21.21.0
Fecal boli incidents, locomotor time 11.51.72.71.11.6-1.7-0.4
Change in fecal boli incidents, locomotor task0.00.00.1-0.4-0.10.1-0.0
Time >=10cm from walls, locomotor time 11.31.31.90.71.2-1.2-1.4
Bouts of movement, locomotor time 10.20.20.2-0.5-0.30.40.5
Total resting periods, locomotor time 10.20.20.3-0.5-0.30.40.3
Rest time, locomotor task time 10.10.10.2-0.4-0.20.4-0.2
Distance moved, locomotor task time 11.01.11.40.90.9-1.1-1.2
Vertical activity count, locomotor time 10.20.20.60.10.2-0.30.8
Time >=10cm from walls, locomotor time 20.91.01.61.01.3-1.20.2
Bouts of movement, locomotor time 20.50.51.1-0.3-0.60.7-1.0
Total resting periods, locomotor time 20.50.51.2-0.2-0.60.7-1.1
Rest time, locomotor task time 20.30.40.5-0.6-0.70.7-0.5
Distance moved, locomotor task time 20.40.50.70.80.8-0.80.2
Vertical activity count, locomotor time 20.40.50.70.50.7-0.70.9
Light reinforcement 14.17.410.1-3.1-3.23.10.2
Light reinforcement 21.31.82.4-1.5-1.61.5-0.1
Bone: marrow area0.20.50.60.80.7-0.7-0.6
Bone: maximum diameter0.40.70.7-0.8-0.80.8-0.8
Bone: maximum force1.22.02.61.61.6-1.5-0.8
Bone: maximum moment0.91.62.11.41.4-1.4-0.7
Mean time between licks in bursts3.85.46.7-2.6-2.62.61.3
Mean num. licks in bursts0.10.10.20.30.3-0.4-0.4
Cd content in liver0.20.20.20.50.5-0.5-0.4
Co content in liver0.50.60.8-0.9-0.90.90.5
Cu content in liver0.50.71.70.60.6-0.6-1.3
Fe content in liver0.10.10.3-0.3-0.30.30.6
K content in liver0.60.62.10.30.3-0.3-1.4
Mg content in liver0.60.72.20.40.4-0.4-1.5
Mn content in liver0.91.13.7-0.4-0.50.5-1.9
Na content in liver1.81.92.81.31.2-1.2-1.7
Rb content in liver1.11.32.60.90.9-0.9-1.6
Se content in liver0.10.10.2-0.4-0.40.4-0.2
Sr content in liver0.40.41.3-0.2-0.30.31.1
Zn content in liver3.33.65.1-1.7-1.81.82.3
Bone: minimum diameter0.10.10.40.30.3-0.2-0.6
Time in familiar zone, hab. session 12.72.52.8-1.6-1.71.71.4
Time in novel zone, hab. session 11.81.72.01.31.3-1.3-1.4
Total zone transitions, hab. session 10.81.12.6-0.8-0.80.8-1.6
Total locomotion distance, hab. session 11.11.64.8-0.7-0.70.7-2.2
Locomotion velocity, hab. session 11.21.83.8-1.0-1.01.0-2.0
Time in familiar zone, hab. session 26.76.97.8-2.8-2.82.82.1
Time in novel zone, hab. session 25.25.15.82.42.4-2.4-1.8
Total zone transitions, hab. session 22.02.68.70.80.7-0.7-2.9
Total locomotion distance, hab. session 21.01.33.1-0.8-0.80.8-1.8
Locomotion velocity, hab. session 21.21.75.1-0.7-0.70.7-2.3
Novel to familiar place preference ratio5.45.55.92.42.4-2.4-2.1
Novelty place preference3.63.63.71.91.9-1.9-1.9
Time in novel zone, NPP test3.73.94.22.02.0-2.0-1.8
Total zone transitions, NPP test0.81.14.30.20.2-0.2-2.1
Total locomotion distance, NPP test0.91.24.40.40.4-0.4-2.1
Locomotion velocity, NPP test0.71.04.10.10.1-0.1-2.0
Intraocular pressure0.81.13.8-0.5-0.50.51.9
Delta distance traveled before/after self-admin1.41.52.1-1.4-1.51.30.5
Delta ambulatory time before/after self-admin1.31.52.0-1.4-1.41.40.2
Parametrial fat weight0.40.91.1-1.0-0.90.80.9
Pavlov. Cond. lever latency0.50.62.1-0.3-0.30.31.4
Pavlov. Cond. magazine entry latency2.63.34.3-2.0-2.12.10.8
Pavlov. Cond. change in total contacts0.00.10.1-0.2-0.20.2-0.3
Pavlov. Cond. index score0.30.40.5-0.5-0.60.6-0.7
Pavlov. Cond. latency score0.40.41.2-0.4-0.50.5-1.1
Pavlov. Cond. lever contacts0.60.72.60.20.1-0.1-1.6
Pavlov. Cond. magazine entry number0.60.71.00.91.0-1.0-0.2
Pavlov. Cond. intertrial magazine entries0.50.61.2-0.6-0.60.61.1
Pavlov. Cond. lever-magazine prob. diff.0.50.60.8-0.8-0.90.9-0.5
Pavlov. Cond. response bias0.91.11.5-1.1-1.21.20.1
Pavlov. Cond. lever latency0.70.91.21.11.0-1.0-0.8
Pavlov. Cond. magazine entry latency0.30.40.5-0.7-0.60.60.4
Pavlov. Cond. change in total contacts0.81.11.2-1.1-1.11.10.9
Pavlov. Cond. index score0.81.11.3-1.2-1.01.00.9
Pavlov. Cond. latency score0.60.81.1-1.1-0.90.90.6
Pavlov. Cond. lever contacts0.91.21.4-1.2-1.01.01.2
Pavlov. Cond. magazine entry number0.50.70.80.90.9-0.9-0.6
Pavlov. Cond. intertrial magazine entries0.20.20.40.40.4-0.40.6
Pavlov. Cond. lever-magazine prob. diff.0.70.91.3-1.1-1.01.00.7
Pavlov. Cond. response bias1.92.63.0-1.7-1.61.61.5
Time in closed arm before self-admin1.71.93.71.21.2-1.1-1.9
Time in closed arm after self-admin0.00.00.1-0.2-0.20.20.3
Time in open arm before self-admin0.70.81.0-1.0-0.80.90.9
Time in open arm after self-admin0.50.60.91.00.9-0.8-0.2
Bone: periosteal estimation0.61.21.61.11.0-1.0-1.3
Bone: periosteal perimeter0.10.20.80.00.00.1-0.9
Bone: post-yield work0.30.50.70.80.8-0.70.1
Progressive ratio test 1 active lever presses0.00.00.10.10.1-0.10.4
Progressive ratio test 1 breakpoint0.10.10.10.30.2-0.20.3
Progressive ratio test 1 inactive lever presses0.00.00.0-0.1-0.00.1-0.2
Progressive ratio test 2 active lever presses0.30.30.7-0.6-0.30.40.8
Progressive ratio test 2 breakpoint0.20.20.4-0.6-0.30.40.4
Progressive ratio test 2 inactive lever presses0.00.00.1-0.30.00.0-0.3
Incentive Sensitization - Responses0.30.30.9-0.6-0.20.21.0
Incentive Sensitization - Breakpoint0.30.30.7-0.6-0.30.30.9
Sum of active levers in priming session hrs 5-60.00.00.00.00.1-0.1-0.2
Progressive ratio0.10.10.10.40.4-0.3-0.0
Food seeking constrained by brief footshock0.10.20.2-0.4-0.30.4-0.5
Seeking ratio, punishment vs. effort0.10.10.1-0.4-0.40.4-0.4
Retroperitoneal fat weight0.20.50.80.90.8-0.80.0
Reaction time number correct0.60.82.50.60.5-0.41.6
Reaction time mean minus median0.71.01.1-1.0-1.01.00.8
Reaction time mean minus median AUC0.10.20.60.20.2-0.1-0.8
Reaction time num false alarms0.40.52.00.10.1-0.11.4
Reaction time num false alarms AUC0.50.62.50.20.1-0.11.6
Reaction time trials correct on left0.60.82.50.60.5-0.41.6
Reaction time trials on left0.50.82.20.60.5-0.51.5
Reaction time mean0.10.10.20.20.2-0.2-0.5
Reaction time mean AUC0.10.10.30.30.3-0.3-0.5
Median of all reaction times0.40.60.70.70.7-0.7-0.8
Reaction time omissions0.10.20.2-0.4-0.40.4-0.4
Reaction time false alarm rate0.00.00.10.10.1-0.10.3
Reaction time premature initiation rate1.41.92.1-1.4-1.41.41.2
Reaction time premature initiations1.72.44.6-1.2-1.31.32.1
Std. dev. reaction times0.10.20.2-0.5-0.50.50.2
Reaction time trials completed0.50.82.20.60.5-0.51.5
Reaction time trials AUC0.60.93.10.50.4-0.41.8
Run reversals in cocaine runway, females0.20.20.3-0.5-0.50.6-0.1
Run reversals in cocaine runway, males1.11.01.5-1.1-1.21.2-0.2
Latency to leave start box in cocaine runway0.50.61.2-0.7-0.60.5-1.1
Latency to leave start box in cocaine runway, F1.21.34.30.30.6-0.7-2.1
Latency to leave start box in cocaine runway, M3.33.23.5-1.8-1.81.91.7
Std. dev. time between licks in bursts0.40.50.6-0.8-0.80.8-0.0
Total sessions with >9 infusions0.10.10.30.10.4-0.3-0.5
Short access day 1 total inactive lever presses0.00.10.1-0.2-0.10.2-0.3
Short access day 10 total inactive lever presses0.10.10.2-0.2-0.20.20.5
Short access day 1 total infusions0.20.20.7-0.2-0.10.1-0.9
Short access day 10 total infusions0.10.10.1-0.2-0.20.30.4
Short access total infusions0.00.00.1-0.00.2-0.1-0.3
Short access day 1 locomotion0.50.50.9-0.9-0.70.8-0.4
Short access day 10 total locomotion3.23.65.1-2.3-2.02.11.1
Short access total locomotion0.50.51.0-1.0-0.70.80.1
One hour access (0.3 mA shock)0.10.10.30.40.5-0.3-0.2
Compulsive drug intake1.51.51.91.21.4-1.3-1.0
One hour access (shock baseline)0.20.30.5-0.5-0.40.50.7
Social response proportion0.50.60.6-0.7-0.70.7-0.8
Social responses4.65.98.2-2.9-2.82.80.2
Social time0.50.70.80.80.9-0.9-0.7
Soleus weight7.120.727.35.25.2-5.2-1.1
Bone: stiffness2.74.25.42.32.3-2.3-1.0
Tibialis anterior weight1.03.44.52.12.1-2.1-0.4
Time to tail flick, vehicle, before self-admin0.40.41.0-0.4-0.50.5-1.0
Time to tail flick, vehicle, after self-admin0.90.92.3-0.5-0.80.71.5
Time to tail flick, test, before self-admin0.30.31.1-0.2-0.10.2-1.0
Time to tail flick, test, after self-admin0.30.30.5-0.3-0.70.7-0.4
Delta time to tail flick, vehicle, before/after SA0.70.72.60.20.2-0.21.6
Delta time to tail flick, test, before/after SA0.50.50.8-0.5-0.70.60.9
Tibia length0.82.33.0-1.7-1.71.70.7
Ambulatory time before self-admin0.60.60.70.70.9-0.8-0.7
Ambulatory time after self-admin0.10.20.3-0.6-0.40.4-0.3
Bone: tissue strength1.61.61.91.31.4-1.4-0.9
Total heroin consumption1.51.82.4-1.5-1.51.50.5
Bone: trabecular number0.40.61.5-0.5-0.60.6-1.2
Bone: trabecular spacing1.01.35.30.10.1-0.12.3
Bone: trabecular thickness2.53.010.30.70.7-0.7-3.2
Bone: trabecular tissue density0.91.31.91.31.4-1.3-0.0
Water consumed over 24 hours0.81.01.11.01.0-1.0-1.0
Number of responses in last shaping day0.10.10.2-0.5-0.10.20.1