Fzd5

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 IL gene expression Fzd5 0.18 0.15 3.0e-03 0.05 0.06 0.01 0.05 2.2e-02 1.4e-02 1.9e-01 2.4e-02
2 PL gene expression Fzd5 0.05 0.04 1.1e-06 0.03 0.05 0.03 0.04 1.2e-04 7.0e-06 1.4e-04 6.6e-05
3 NAcc gene expression Fzd5 0.03 0.02 6.3e-04 0.02 0.02 0.01 0.02 1.1e-03 1.5e-03 1.9e-03 1.0e-03
4 Liver gene expression Fzd5 0.04 0.04 1.4e-04 0.02 0.02 0.02 0.02 1.0e-03 2.1e-03 3.8e-03 2.7e-03

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density0.10.10.20.30.40.4-0.4
Area under the delay curve0.10.10.2-0.4-0.4-0.30.3
BMI with tail8.228.130.8-5.5-5.4-5.25.1
BMI without tail3.09.19.6-3.1-3.1-3.02.9
Body weight0.20.81.0-1.0-0.9-0.90.8
Weight adjusted by age0.81.21.80.81.01.3-1.3
Bone surface0.40.70.90.60.70.9-0.9
Bone volume0.91.61.71.21.21.3-1.3
Breakpoint value in progressive ratio session2.53.03.41.61.61.9-1.8
Number of licking bursts0.20.30.5-0.4-0.5-0.70.7
Context. condit. distance diff. score1.11.31.6-1.0-1.1-1.31.2
Locomotion velocity, session 11.31.41.71.31.31.2-1.1
Locomotion distance, session 10.10.10.10.30.30.4-0.2
Locomotion velocity, session 20.10.10.20.10.20.4-0.3
Locomotion distance, session 20.00.00.1-0.3-0.2-0.10.3
Locomotion velocity, session 30.60.70.8-0.9-0.8-0.80.9
Locomotion distance, session 31.61.71.81.31.31.3-1.3
Stereotopy head waving bouts, day 32.22.62.8-1.7-1.7-1.51.6
Stereotopy head waving duration, day 32.42.93.3-1.8-1.7-1.61.6
Locomotion velocity, session 70.00.00.0-0.1-0.1-0.10.1
Locomotion distance, session 70.50.60.80.70.80.9-0.8
Stereotopy head waving bouts, day 70.30.30.4-0.5-0.5-0.60.6
Stereotopy head waving duration, day 72.53.03.2-1.7-1.7-1.71.8
Locomotion velocity, session 80.10.10.2-0.3-0.3-0.40.4
Locomotion distance, session 80.30.40.6-0.5-0.6-0.70.8
Degree of sensitization distance0.30.30.4-0.6-0.6-0.50.5
Degree of sensitization stereotypy0.80.91.0-0.9-0.9-1.01.0
Conditioned locomotion1.31.51.71.21.21.2-1.3
Cocaine response after cond. corrected1.21.41.61.21.21.2-1.3
Cocaine response after cond. not corrected1.41.71.91.41.41.2-1.3
Cocaine response before conditioning0.10.10.20.1-0.1-0.30.4
Saline control response0.20.30.5-0.7-0.7-0.40.4
Bone: connectivity density0.50.81.0-1.0-1.0-0.80.8
Bone: cortical apparent density1.31.82.3-1.5-1.4-1.21.2
Bone: cortical area0.81.21.31.01.01.2-1.1
Bone: cortical porosity7.78.39.53.13.02.7-2.7
Bone: cortical porosity9.19.911.33.43.33.0-2.9
Bone: cortical thickness0.20.40.50.50.60.7-0.7
Bone: cortical thickness1.41.71.91.21.31.4-1.3
Bone: cortical tissue density1.62.22.7-1.6-1.6-1.31.3
Condit. Reinf. active minus inactive responses1.11.31.41.21.21.1-1.0
Condit. Reinf. active-inactive response ratio0.10.10.10.30.30.2-0.2
Condit. Reinf. active responses2.02.52.81.51.51.7-1.5
Condit. Reinf. inactive responses1.51.82.31.21.31.5-1.4
Incentive salience index mean1.61.92.21.31.41.5-1.4
Condit. Reinf. lever presses1.11.62.11.11.21.4-1.3
Condit. Reinf. active minus inactive responses8.110.410.63.23.23.2-3.2
Condit. Reinf. active-inactive response ratio6.57.58.02.82.82.7-2.7
Condit. Reinf. active responses5.77.98.22.72.82.8-2.9
Condit. Reinf. inactive responses0.30.50.60.60.60.7-0.7
Condit. Reinf. lever presses1.31.81.81.31.31.3-1.4
Condit. Reinf. lever reinforcers received5.88.18.32.82.92.9-2.9
Conditioned reinforcement - actives1.01.71.9-1.4-1.3-1.21.2
Conditioned reinforcement - inactives1.62.42.71.41.51.6-1.6
Conditioned locomotion4.96.48.3-2.9-2.7-2.22.3
Patch foraging indifference point 0 sec0.91.61.9-1.2-1.2-1.41.3
Patch foraging indifference point AUC1.42.02.61.11.21.6-1.6
Delay disc. indifference point, 0s delay1.51.61.9-1.4-1.4-1.21.2
Delay disc. indifference point, 16s delay0.10.10.10.20.20.4-0.4
Delay disc. indifference point, 2s delay1.71.92.0-1.4-1.4-1.31.3
Delay disc. indifference point, 24s delay0.10.20.2-0.4-0.4-0.40.3
Delay disc. indifference point, 4s delay1.31.41.6-1.3-1.2-1.11.1
Delay disc. indifference point, 8s delay0.00.00.00.10.10.1-0.2
Indifference point function ln k2.23.84.6-1.7-1.8-2.12.1
Indifference point function log k2.23.84.6-1.7-1.8-2.12.1
Patch foraging total patch changes 0 sec0.81.51.8-1.1-1.1-1.31.3
Patch foraging total patch changes 12 sec0.30.40.60.40.50.8-0.7
Patch foraging total patch changes 18 sec0.20.30.4-0.7-0.6-0.60.5
Patch foraging total patch changes 24 sec0.10.20.30.20.30.5-0.5
Patch foraging total patch changes 6 sec0.61.01.3-1.1-1.1-0.90.8
Patch foraging time to switch 0 sec0.00.00.00.10.1-0.00.0
Patch foraging water rate 0 sec0.00.10.1-0.3-0.2-0.20.3
Patch foraging water rate 12 sec0.40.91.3-0.8-0.8-1.11.1
Patch foraging water rate 18 sec0.10.20.40.70.60.2-0.2
Patch foraging water rate 24 sec0.30.40.7-0.1-0.3-0.90.8
Patch foraging water rate 6 sec1.92.83.0-1.6-1.6-1.71.7
Seeking ratio, delayed vs. immediate footshock0.91.11.40.91.01.2-1.2
Distance traveled before self-admin3.34.45.01.92.02.2-2.2
Distance traveled after self-admin0.10.10.20.10.20.4-0.4
Extensor digitorum longus weight1.97.68.7-3.0-2.9-2.62.6
Bone: elastic displacement0.10.10.1-0.3-0.3-0.20.2
Bone: elastic work0.40.50.50.70.70.7-0.7
Bone: endosteal estimation1.83.94.11.91.92.0-2.0
Bone: endosteal perimeter0.30.70.91.00.90.8-0.7
Epididymis fat weight0.20.60.6-0.7-0.8-0.70.7
Delta time in closed arm before/after self-admin1.01.01.1-1.0-1.0-1.00.9
Delta time in open arm before/after self-admin5.85.75.82.42.42.4-2.4
Diff in mean of infusions in LGA sessions0.40.50.5-0.7-0.7-0.70.7
Delay discount exponential model param0.10.10.20.40.40.3-0.2
Extinction: sum of active levers before priming0.00.00.1-0.3-0.20.10.0
Active lever presses in extinction session 60.90.90.90.90.90.9-0.9
Bone: final force1.62.52.81.71.61.5-1.5
Bone: final moment1.01.61.91.41.31.2-1.2
Food consumed during 24 hour testing period0.70.91.00.90.91.0-1.0
Glucose0.71.11.1-1.0-1.0-1.01.0
Heart weight0.10.20.40.60.50.2-0.2
Delay discount hyperbolic model param0.20.20.30.50.50.4-0.4
Intermittent access intake day 1-15 change0.20.50.5-0.7-0.7-0.70.7
Intermittent access intake escalation0.20.50.6-0.5-0.6-0.80.8
Intermittent access intake escalation 20.30.30.4-0.5-0.6-0.60.6
Intermitt. access day 1 inactive lever presses0.10.30.5-0.4-0.5-0.70.7
Intermitt. access day 15 inactive lever presses0.00.10.10.40.30.2-0.2
Intermitt. access escalation Index0.20.30.5-0.7-0.6-0.30.3
Intermittent access day 1 total infusions0.10.10.20.20.30.5-0.5
Intermittent access day 15 total infusions0.50.70.8-0.9-0.8-0.80.8
Intermittent access terminal intake (last 3 days)1.31.81.8-1.3-1.3-1.31.3
Intermittent access total infusions0.20.30.5-0.7-0.6-0.40.4
Intermittent access day 1 locomotion0.00.10.2-0.4-0.30.00.0
Intermittent access day 15 total locomotion0.61.01.5-1.2-1.1-0.80.9
Intermittent access total locomotion2.42.94.1-2.0-1.8-1.41.4
Intermittent access standard deviation0.00.00.10.30.20.1-0.1
Left kidney weight0.52.42.9-1.7-1.6-1.51.3
Right kidney weight0.83.43.5-1.9-1.8-1.91.8
Cocaine induced anxiety0.30.40.6-0.5-0.6-0.80.7
Post-drug Anxiety1.21.31.5-1.1-1.1-1.21.2
Baseline Anxiety0.20.30.3-0.5-0.5-0.50.5
Tail length3.413.414.03.73.73.5-3.6
Length with tail3.917.017.64.24.24.0-4.1
Length without tail0.72.32.41.61.61.5-1.5
Times rat made contact with spout0.81.01.01.01.01.0-0.9
Lifetime Intake0.50.70.8-0.9-0.8-0.80.8
Liver weight, left3.15.15.92.02.22.4-2.4
Liver weight, right0.20.30.4-0.6-0.6-0.50.5
Locomotor activity0.00.00.1-0.0-0.1-0.30.3
Locomotor testing distance0.10.30.4-0.2-0.3-0.70.7
Locomotor testing rearing0.10.10.2-0.0-0.2-0.50.5
Locomotion in novel chamber0.50.71.2-1.1-1.0-0.50.6
Locomotion in novel chamber post-restriction0.00.00.0-0.1-0.10.2-0.1
Fecal boli incidents, locomotor time 11.01.51.61.31.31.2-1.1
Change in fecal boli incidents, locomotor task0.00.00.00.10.10.1-0.1
Time >=10cm from walls, locomotor time 12.52.72.81.61.61.6-1.7
Bouts of movement, locomotor time 11.82.12.11.41.41.4-1.5
Total resting periods, locomotor time 11.21.41.41.21.21.1-1.2
Rest time, locomotor task time 12.63.23.31.81.81.8-1.8
Distance moved, locomotor task time 10.40.60.9-0.9-0.9-0.70.7
Vertical activity count, locomotor time 10.51.21.4-1.2-1.2-1.01.1
Time >=10cm from walls, locomotor time 20.60.90.91.01.00.9-0.9
Bouts of movement, locomotor time 20.40.60.6-0.8-0.8-0.80.8
Total resting periods, locomotor time 20.10.10.1-0.3-0.3-0.30.3
Rest time, locomotor task time 21.62.12.21.51.51.4-1.4
Distance moved, locomotor task time 20.81.01.2-1.1-1.1-0.90.9
Vertical activity count, locomotor time 23.44.64.9-2.2-2.2-2.12.1
Light reinforcement 11.22.93.1-1.8-1.7-1.71.7
Light reinforcement 20.60.91.01.00.91.0-1.0
Bone: marrow area1.63.53.81.81.81.9-1.9
Bone: maximum diameter0.91.71.71.31.31.3-1.3
Bone: maximum force1.01.71.81.41.31.3-1.3
Bone: maximum moment0.40.80.91.00.90.8-0.8
Mean time between licks in bursts0.41.01.0-1.0-1.0-1.01.0
Mean num. licks in bursts0.40.70.80.70.70.9-0.9
Cd content in liver1.01.21.5-0.9-1.0-1.21.2
Co content in liver0.00.00.00.10.0-0.10.1
Cu content in liver0.10.20.2-0.4-0.4-0.40.4
Fe content in liver0.20.20.30.60.50.3-0.3
K content in liver0.10.10.2-0.4-0.3-0.0-0.0
Mg content in liver0.20.20.4-0.6-0.5-0.30.3
Mn content in liver1.41.51.6-1.3-1.3-1.21.2
Na content in liver0.91.01.60.60.81.3-1.2
Rb content in liver0.20.20.2-0.5-0.5-0.40.4
Se content in liver0.30.30.5-0.4-0.5-0.70.7
Sr content in liver1.00.90.90.90.90.9-1.0
Zn content in liver0.20.30.3-0.6-0.5-0.40.5
Bone: minimum diameter1.62.82.91.71.71.7-1.6
Time in familiar zone, hab. session 12.22.12.3-1.5-1.5-1.51.3
Time in novel zone, hab. session 16.46.46.92.62.62.5-2.4
Total zone transitions, hab. session 10.60.80.91.01.00.9-0.8
Total locomotion distance, hab. session 11.92.83.01.71.71.6-1.6
Locomotion velocity, hab. session 11.52.12.31.51.51.4-1.4
Time in familiar zone, hab. session 20.20.20.3-0.5-0.5-0.30.2
Time in novel zone, hab. session 20.00.00.10.30.2-0.10.2
Total zone transitions, hab. session 20.00.00.10.30.2-0.00.2
Total locomotion distance, hab. session 20.00.00.10.30.30.00.1
Locomotion velocity, hab. session 20.00.00.10.30.20.00.1
Novel to familiar place preference ratio1.31.51.51.21.21.1-1.2
Novelty place preference1.81.92.21.31.41.4-1.5
Time in novel zone, NPP test2.02.22.41.41.51.4-1.6
Total zone transitions, NPP test0.20.30.30.50.60.6-0.4
Total locomotion distance, NPP test0.50.70.80.90.90.9-0.7
Locomotion velocity, NPP test0.20.30.30.50.60.6-0.4
Intraocular pressure3.44.95.3-2.1-2.2-2.22.3
Delta distance traveled before/after self-admin2.02.12.2-1.5-1.5-1.41.5
Delta ambulatory time before/after self-admin2.02.52.5-1.6-1.6-1.51.6
Parametrial fat weight0.10.10.4-0.0-0.2-0.60.4
Pavlov. Cond. lever latency0.10.20.3-0.4-0.4-0.50.4
Pavlov. Cond. magazine entry latency0.91.21.31.11.11.1-1.0
Pavlov. Cond. change in total contacts0.00.00.0-0.2-0.1-0.00.1
Pavlov. Cond. index score0.60.81.00.80.81.0-0.9
Pavlov. Cond. latency score0.60.70.90.80.80.9-0.8
Pavlov. Cond. lever contacts0.20.20.30.30.40.6-0.5
Pavlov. Cond. magazine entry number0.20.20.3-0.5-0.5-0.50.4
Pavlov. Cond. intertrial magazine entries0.00.00.00.00.0-0.0-0.1
Pavlov. Cond. lever-magazine prob. diff.0.60.81.00.80.81.0-0.9
Pavlov. Cond. response bias0.60.70.80.90.90.9-0.8
Pavlov. Cond. lever latency1.31.82.1-1.4-1.4-1.31.2
Pavlov. Cond. magazine entry latency0.30.30.40.50.50.6-0.6
Pavlov. Cond. change in total contacts1.52.32.41.61.51.5-1.5
Pavlov. Cond. index score1.92.62.61.61.61.6-1.6
Pavlov. Cond. latency score1.72.22.31.51.51.5-1.5
Pavlov. Cond. lever contacts2.23.03.31.81.81.7-1.7
Pavlov. Cond. magazine entry number0.91.11.3-0.9-1.0-1.11.1
Pavlov. Cond. intertrial magazine entries1.92.82.9-1.7-1.7-1.71.7
Pavlov. Cond. lever-magazine prob. diff.1.82.42.41.51.51.5-1.5
Pavlov. Cond. response bias2.33.13.21.81.81.7-1.7
Time in closed arm before self-admin1.41.81.91.41.31.3-1.2
Time in closed arm after self-admin0.00.00.00.20.1-0.00.1
Time in open arm before self-admin2.62.83.0-1.7-1.7-1.71.6
Time in open arm after self-admin2.62.93.31.51.61.8-1.8
Bone: periosteal estimation1.73.63.71.91.91.9-1.9
Bone: periosteal perimeter1.11.92.01.41.41.4-1.3
Bone: post-yield work0.00.00.1-0.1-0.1-0.30.2
Progressive ratio test 1 active lever presses0.00.00.1-0.3-0.2-0.10.1
Progressive ratio test 1 breakpoint0.00.00.1-0.2-0.10.1-0.0
Progressive ratio test 1 inactive lever presses1.31.81.9-1.4-1.4-1.31.3
Progressive ratio test 2 active lever presses0.00.00.0-0.2-0.10.1-0.1
Progressive ratio test 2 breakpoint0.00.00.0-0.00.10.2-0.2
Progressive ratio test 2 inactive lever presses0.20.30.7-0.8-0.6-0.20.2
Incentive Sensitization - Responses0.10.20.30.20.30.6-0.6
Incentive Sensitization - Breakpoint0.10.10.20.10.20.4-0.5
Sum of active levers in priming session hrs 5-62.22.12.61.21.31.6-1.5
Progressive ratio0.00.00.10.30.20.1-0.2
Food seeking constrained by brief footshock1.51.92.4-1.6-1.5-1.21.3
Seeking ratio, punishment vs. effort0.60.81.1-1.1-1.0-0.70.8
Retroperitoneal fat weight0.83.33.7-1.8-1.8-1.91.7
Reaction time number correct0.40.91.2-0.7-0.8-1.11.1
Reaction time mean minus median0.00.00.1-0.00.10.3-0.3
Reaction time mean minus median AUC0.10.20.30.40.40.5-0.6
Reaction time num false alarms3.95.55.5-2.3-2.3-2.32.3
Reaction time num false alarms AUC3.35.15.3-2.2-2.2-2.32.3
Reaction time trials correct on left0.40.91.2-0.7-0.8-1.11.1
Reaction time trials on left0.50.91.2-0.7-0.8-1.11.1
Reaction time mean3.55.55.82.32.32.4-2.4
Reaction time mean AUC2.64.24.52.02.02.1-2.1
Median of all reaction times5.57.88.02.82.82.8-2.8
Reaction time omissions0.10.10.2-0.3-0.3-0.40.4
Reaction time false alarm rate1.62.22.3-1.5-1.5-1.51.5
Reaction time premature initiation rate0.20.30.30.50.50.5-0.5
Reaction time premature initiations0.00.00.00.0-0.0-0.10.1
Std. dev. reaction times0.51.01.20.90.91.1-1.1
Reaction time trials completed0.50.91.2-0.7-0.8-1.11.1
Reaction time trials AUC0.30.60.9-0.6-0.7-0.90.9
Run reversals in cocaine runway, females0.50.50.8-0.6-0.6-0.90.8
Run reversals in cocaine runway, males0.20.20.40.60.50.3-0.3
Latency to leave start box in cocaine runway2.83.23.3-1.8-1.8-1.81.7
Latency to leave start box in cocaine runway, F2.62.93.2-1.6-1.7-1.81.7
Latency to leave start box in cocaine runway, M0.60.60.8-0.9-0.8-0.60.6
Std. dev. time between licks in bursts2.94.04.2-2.0-1.9-2.02.0
Total sessions with >9 infusions0.00.00.0-0.1-0.1-0.20.1
Short access day 1 total inactive lever presses0.50.71.0-1.0-0.9-0.70.7
Short access day 10 total inactive lever presses0.10.10.30.50.40.1-0.1
Short access day 1 total infusions0.30.30.4-0.5-0.5-0.70.6
Short access day 10 total infusions0.20.20.3-0.6-0.5-0.40.4
Short access total infusions1.01.31.5-1.0-1.1-1.21.2
Short access day 1 locomotion0.30.40.40.60.60.6-0.6
Short access day 10 total locomotion0.30.50.5-0.7-0.7-0.70.7
Short access total locomotion0.91.11.4-1.2-1.1-0.91.0
One hour access (0.3 mA shock)0.10.10.2-0.5-0.3-0.00.1
Compulsive drug intake0.20.20.4-0.2-0.3-0.60.6
One hour access (shock baseline)0.10.10.2-0.5-0.4-0.20.3
Social response proportion0.40.40.50.60.60.7-0.7
Social responses0.70.91.00.90.91.0-1.0
Social time0.30.40.50.60.60.7-0.7
Soleus weight0.00.10.2-0.4-0.30.0-0.1
Bone: stiffness0.81.31.41.21.21.1-1.1
Tibialis anterior weight0.41.21.6-1.3-1.2-0.90.9
Time to tail flick, vehicle, before self-admin0.20.20.20.30.40.5-0.5
Time to tail flick, vehicle, after self-admin0.40.60.91.00.80.5-0.5
Time to tail flick, test, before self-admin0.20.20.30.60.50.2-0.2
Time to tail flick, test, after self-admin2.62.73.2-1.8-1.7-1.51.5
Delta time to tail flick, vehicle, before/after SA0.10.10.2-0.0-0.2-0.40.4
Delta time to tail flick, test, before/after SA1.81.82.7-1.6-1.5-1.11.1
Tibia length1.54.14.32.12.02.0-2.0
Ambulatory time before self-admin1.92.93.51.41.61.9-1.8
Ambulatory time after self-admin0.20.30.6-0.7-0.6-0.30.3
Bone: tissue strength0.60.60.8-0.6-0.7-0.90.8
Total heroin consumption0.80.91.01.01.01.0-0.9
Bone: trabecular number0.10.20.3-0.5-0.5-0.40.4
Bone: trabecular spacing0.40.50.60.80.70.6-0.7
Bone: trabecular thickness0.50.70.70.80.80.8-0.8
Bone: trabecular tissue density0.91.41.61.31.21.1-1.1
Water consumed over 24 hours0.00.00.0-0.1-0.00.00.0
Number of responses in last shaping day0.50.50.60.80.80.7-0.7