Fkbp2

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 BLA intron excision ratio chr1_204169059_204169847 0.08 0.06 3.8e-03 0.02 0.03 0.01 0.01 2.8e-02 1.3e-02 7.2e-02 6.5e-02
2 PL intron excision ratio chr1_204169095_204169229 0.04 0.03 3.1e-03 0.01 0.02 0.02 0.01 1.4e-02 5.4e-03 5.2e-03 7.2e-03
3 Liver intron excision ratio chr1_204168318_204168436 0.04 0.03 5.0e-03 0 0 0.01 -0 2.6e-01 2.6e-01 1.5e-02 4.3e-01
4 LHb intron excision ratio chr1_204168318_204168436 0.35 0.17 3.3e-03 0.09 0.11 0.13 0.09 4.2e-03 1.3e-03 6.6e-04 3.3e-03

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density0.81.32.0-1.1-0.4-1.4-1.3
Area under the delay curve0.40.40.90.2-0.5-0.7-1.0
BMI with tail3.511.319.2-3.1-0.0-4.0-4.4
BMI without tail1.22.53.9-1.40.3-2.0-2.0
Body weight3.113.021.1-3.82.5-4.6-3.2
Weight adjusted by age1.92.13.9-2.01.4-1.7-0.3
Bone surface4.07.013.2-3.60.6-3.5-1.4
Bone volume1.93.36.6-2.6-0.2-2.3-1.0
Breakpoint value in progressive ratio session2.32.54.6-2.21.5-1.70.3
Number of licking bursts0.20.20.5-0.70.4-0.3-0.0
Context. condit. distance diff. score1.01.22.11.5-1.11.1-0.6
Locomotion velocity, session 10.30.30.60.4-0.40.4-0.8
Locomotion distance, session 10.60.82.6-0.3-0.4-0.5-1.6
Locomotion velocity, session 21.61.82.6-1.61.0-1.5-1.1
Locomotion distance, session 20.30.41.0-0.2-0.1-0.6-1.0
Locomotion velocity, session 32.12.56.60.6-1.60.6-2.6
Locomotion distance, session 30.20.20.60.3-0.4-0.2-0.8
Stereotopy head waving bouts, day 32.22.64.71.0-1.81.1-2.2
Stereotopy head waving duration, day 31.11.32.00.9-1.41.1-1.0
Locomotion velocity, session 71.11.22.00.6-1.30.7-1.4
Locomotion distance, session 70.70.92.10.8-0.60.5-1.5
Stereotopy head waving bouts, day 70.20.20.7-0.3-0.80.00.1
Stereotopy head waving duration, day 70.91.12.6-1.60.5-1.2-0.1
Locomotion velocity, session 80.10.10.3-0.30.3-0.6-0.3
Locomotion distance, session 80.71.02.20.4-1.50.2-1.3
Degree of sensitization distance0.80.82.00.3-0.60.7-1.4
Degree of sensitization stereotypy0.70.81.9-1.40.1-1.10.3
Conditioned locomotion0.60.61.0-1.00.7-0.9-0.5
Cocaine response after cond. corrected1.61.83.21.8-1.11.4-0.9
Cocaine response after cond. not corrected1.01.12.21.5-0.90.8-0.7
Cocaine response before conditioning1.31.63.1-1.30.8-1.80.8
Saline control response2.73.55.2-1.92.3-2.2-0.5
Bone: connectivity density2.53.97.4-2.20.6-2.7-1.7
Bone: cortical apparent density0.50.71.7-0.21.3-0.21.0
Bone: cortical area0.81.12.4-1.50.6-1.2-0.6
Bone: cortical porosity0.00.00.1-0.10.00.20.2
Bone: cortical porosity0.20.20.3-0.50.5-0.40.3
Bone: cortical thickness2.03.38.1-1.52.8-1.60.3
Bone: cortical thickness0.40.41.30.11.2-0.6-0.3
Bone: cortical tissue density0.60.82.0-0.21.4-0.21.1
Condit. Reinf. active minus inactive responses0.10.10.2-0.30.50.5-0.1
Condit. Reinf. active-inactive response ratio0.30.30.7-0.00.60.50.8
Condit. Reinf. active responses0.10.20.3-0.3-0.00.6-0.5
Condit. Reinf. inactive responses0.40.50.9-0.1-1.00.2-1.0
Incentive salience index mean0.20.30.8-0.50.30.1-0.9
Condit. Reinf. lever presses0.40.61.0-0.90.0-0.7-1.0
Condit. Reinf. active minus inactive responses0.30.30.7-0.2-0.80.40.7
Condit. Reinf. active-inactive response ratio1.11.13.8-0.1-1.90.70.4
Condit. Reinf. active responses0.10.10.2-0.40.0-0.10.5
Condit. Reinf. inactive responses0.50.61.8-0.11.4-0.70.0
Condit. Reinf. lever presses2.02.85.4-2.30.8-2.2-0.0
Condit. Reinf. lever reinforcers received0.30.40.8-0.90.4-0.50.6
Conditioned reinforcement - actives0.50.51.0-0.2-1.0-0.21.0
Conditioned reinforcement - inactives1.11.22.31.3-1.50.70.5
Conditioned locomotion3.84.57.42.5-2.02.70.6
Patch foraging indifference point 0 sec0.00.10.20.00.40.2-0.2
Patch foraging indifference point AUC2.83.26.9-2.61.7-1.7-0.0
Delay disc. indifference point, 0s delay1.11.22.50.8-1.4-0.1-1.6
Delay disc. indifference point, 16s delay0.20.20.30.4-0.5-0.3-0.6
Delay disc. indifference point, 2s delay0.50.51.50.0-1.2-0.3-0.7
Delay disc. indifference point, 24s delay0.30.30.40.50.70.4-0.5
Delay disc. indifference point, 4s delay0.50.51.60.7-0.2-0.0-1.3
Delay disc. indifference point, 8s delay0.20.20.40.6-0.5-0.1-0.5
Indifference point function ln k6.28.617.84.2-2.63.1-0.3
Indifference point function log k6.28.617.84.2-2.63.1-0.3
Patch foraging total patch changes 0 sec0.10.20.50.20.70.3-0.1
Patch foraging total patch changes 12 sec4.05.27.6-2.82.7-2.3-0.9
Patch foraging total patch changes 18 sec0.81.01.8-1.30.9-1.20.3
Patch foraging total patch changes 24 sec3.34.06.8-2.12.6-1.7-1.3
Patch foraging total patch changes 6 sec0.71.01.1-1.01.0-1.0-1.0
Patch foraging time to switch 0 sec1.72.74.5-2.0-0.1-2.1-1.4
Patch foraging water rate 0 sec2.23.66.42.5-0.52.41.3
Patch foraging water rate 12 sec5.99.117.54.2-1.44.10.7
Patch foraging water rate 18 sec2.73.67.42.7-1.12.4-0.1
Patch foraging water rate 24 sec2.23.17.12.7-1.31.70.9
Patch foraging water rate 6 sec2.94.210.13.2-0.82.40.2
Seeking ratio, delayed vs. immediate footshock0.20.30.70.50.20.8-0.3
Distance traveled before self-admin0.70.71.9-1.40.7-0.7-0.2
Distance traveled after self-admin0.40.40.5-0.70.7-0.60.5
Extensor digitorum longus weight4.618.127.9-5.33.9-4.7-2.6
Bone: elastic displacement1.51.73.92.00.11.60.6
Bone: elastic work0.50.72.20.11.5-0.5-0.5
Bone: endosteal estimation1.63.59.00.3-3.00.5-2.1
Bone: endosteal perimeter1.83.712.00.0-3.50.5-1.6
Epididymis fat weight0.92.24.31.6-2.10.6-1.2
Delta time in closed arm before/after self-admin1.41.42.81.10.81.0-1.7
Delta time in open arm before/after self-admin1.11.01.8-1.30.8-1.00.8
Diff in mean of infusions in LGA sessions0.80.92.6-0.71.6-0.50.4
Delay discount exponential model param0.30.30.7-0.10.40.70.8
Extinction: sum of active levers before priming3.13.15.5-2.31.5-2.0-0.7
Active lever presses in extinction session 62.92.84.8-2.21.7-1.80.5
Bone: final force2.33.76.3-2.51.0-2.3-1.5
Bone: final moment2.13.35.7-2.41.0-2.2-1.4
Food consumed during 24 hour testing period0.30.40.7-0.70.6-0.10.8
Glucose1.82.77.71.4-2.80.6-0.8
Heart weight2.33.26.22.5-1.81.7-0.7
Delay discount hyperbolic model param0.30.30.8-0.10.50.60.9
Intermittent access intake day 1-15 change0.60.62.30.0-0.10.21.5
Intermittent access intake escalation0.40.41.60.0-0.10.11.3
Intermittent access intake escalation 20.40.41.2-0.40.50.21.1
Intermitt. access day 1 inactive lever presses1.21.32.51.2-1.61.00.4
Intermitt. access day 15 inactive lever presses0.60.71.40.7-1.20.8-0.4
Intermitt. access escalation Index1.91.63.81.9-0.81.1-1.0
Intermittent access day 1 total infusions3.94.511.31.8-3.41.0-1.6
Intermittent access day 15 total infusions3.33.79.61.9-3.11.20.1
Intermittent access terminal intake (last 3 days)2.12.37.61.0-2.80.4-0.6
Intermittent access total infusions2.42.78.31.3-2.90.7-0.7
Intermittent access day 1 locomotion3.63.87.01.7-2.60.8-2.1
Intermittent access day 15 total locomotion1.21.33.51.2-1.90.5-0.4
Intermittent access total locomotion3.03.49.41.3-3.10.6-1.5
Intermittent access standard deviation0.70.71.50.6-0.60.81.2
Left kidney weight0.10.30.70.6-0.8-0.2-0.2
Right kidney weight0.10.10.2-0.4-0.4-0.4-0.2
Cocaine induced anxiety0.20.20.4-0.7-0.5-0.40.1
Post-drug Anxiety1.01.12.8-1.70.3-1.10.2
Baseline Anxiety1.51.53.5-1.11.9-1.1-0.4
Tail length0.82.46.8-0.92.6-1.20.7
Length with tail1.65.79.8-2.43.1-2.6-0.8
Length without tail1.43.23.8-1.91.8-1.9-1.4
Times rat made contact with spout0.30.41.3-0.21.1-0.10.4
Lifetime Intake2.42.77.31.5-2.70.6-0.8
Liver weight, left0.20.41.20.3-1.10.40.1
Liver weight, right0.61.13.30.5-0.80.1-1.8
Locomotor activity1.42.36.12.5-0.41.70.5
Locomotor testing distance2.13.59.63.1-0.52.1-0.1
Locomotor testing rearing1.82.76.32.5-0.91.9-0.1
Locomotion in novel chamber1.41.74.61.3-2.10.70.2
Locomotion in novel chamber post-restriction1.92.23.91.6-2.01.21.0
Fecal boli incidents, locomotor time 10.80.91.5-1.2-0.5-1.20.5
Change in fecal boli incidents, locomotor task0.90.81.41.2-0.70.7-0.9
Time >=10cm from walls, locomotor time 11.61.66.4-0.2-2.50.1-0.1
Bouts of movement, locomotor time 13.13.46.7-1.22.6-0.92.2
Total resting periods, locomotor time 12.62.95.4-1.22.3-1.11.9
Rest time, locomotor task time 11.21.31.81.2-0.61.31.2
Distance moved, locomotor task time 10.30.40.9-0.4-0.3-0.5-1.0
Vertical activity count, locomotor time 11.11.21.91.1-1.41.2-0.3
Time >=10cm from walls, locomotor time 20.50.51.4-0.7-0.10.41.2
Bouts of movement, locomotor time 20.60.72.0-0.71.4-0.50.0
Total resting periods, locomotor time 20.30.30.9-0.50.9-0.40.1
Rest time, locomotor task time 22.12.44.51.7-2.11.50.3
Distance moved, locomotor task time 20.80.91.9-1.11.4-0.60.6
Vertical activity count, locomotor time 20.60.70.90.70.81.00.8
Light reinforcement 10.30.50.80.40.40.90.8
Light reinforcement 20.50.61.3-0.1-1.11.10.1
Bone: marrow area1.73.69.30.5-3.00.6-2.1
Bone: maximum diameter0.61.12.6-1.6-0.6-1.1-0.6
Bone: maximum force3.45.89.5-3.10.4-2.8-2.4
Bone: maximum moment2.95.08.1-2.80.4-2.6-2.3
Mean time between licks in bursts0.50.71.70.31.3-0.4-0.8
Mean num. licks in bursts0.30.30.60.80.10.50.5
Cd content in liver0.60.71.40.2-1.20.70.9
Co content in liver2.32.74.62.10.21.91.5
Cu content in liver0.10.10.3-0.50.4-0.20.2
Fe content in liver0.30.40.8-0.9-0.4-0.8-0.0
K content in liver1.61.62.9-1.20.1-1.4-1.7
Mg content in liver0.80.82.8-0.3-0.50.0-1.7
Mn content in liver2.02.25.1-2.31.1-1.6-0.3
Na content in liver0.70.71.7-1.30.6-0.7-0.5
Rb content in liver1.51.82.81.5-1.71.4-0.4
Se content in liver0.60.71.7-1.3-0.3-0.90.5
Sr content in liver3.53.25.6-2.02.4-1.80.2
Zn content in liver1.41.52.1-1.41.4-1.2-0.9
Bone: minimum diameter1.32.45.50.2-2.30.5-2.0
Time in familiar zone, hab. session 10.20.20.30.4-0.10.5-0.5
Time in novel zone, hab. session 10.40.40.91.0-0.60.40.0
Total zone transitions, hab. session 10.10.20.7-0.80.3-0.1-0.1
Total locomotion distance, hab. session 10.60.91.80.5-1.31.0-0.8
Locomotion velocity, hab. session 10.20.30.50.1-0.70.6-0.5
Time in familiar zone, hab. session 20.30.30.70.80.6-0.10.1
Time in novel zone, hab. session 20.20.20.5-0.7-0.3-0.0-0.6
Total zone transitions, hab. session 20.91.12.6-1.00.1-0.9-1.6
Total locomotion distance, hab. session 20.70.92.50.3-0.90.3-1.6
Locomotion velocity, hab. session 20.70.92.00.3-1.20.3-1.4
Novel to familiar place preference ratio1.92.04.3-2.10.6-1.8-0.1
Novelty place preference1.11.12.7-1.70.4-1.30.1
Time in novel zone, NPP test0.90.92.1-1.50.3-1.1-0.2
Total zone transitions, NPP test1.11.62.9-1.70.7-1.5-0.8
Total locomotion distance, NPP test0.30.41.20.1-0.70.2-1.1
Locomotion velocity, NPP test0.10.20.4-0.0-0.50.1-0.6
Intraocular pressure0.81.24.60.10.10.12.1
Delta distance traveled before/after self-admin0.10.20.50.7-0.00.10.3
Delta ambulatory time before/after self-admin0.20.30.70.8-0.20.50.3
Parametrial fat weight1.52.98.01.3-2.80.1-1.4
Pavlov. Cond. lever latency0.50.61.40.9-0.50.51.2
Pavlov. Cond. magazine entry latency0.60.71.4-1.00.3-0.6-1.2
Pavlov. Cond. change in total contacts0.30.31.0-1.0-0.1-0.3-0.0
Pavlov. Cond. index score0.30.30.7-0.90.6-0.5-0.2
Pavlov. Cond. latency score0.20.20.4-0.60.4-0.3-0.5
Pavlov. Cond. lever contacts0.10.20.6-0.20.1-0.1-0.8
Pavlov. Cond. magazine entry number0.50.61.31.2-0.80.6-0.4
Pavlov. Cond. intertrial magazine entries0.60.82.40.50.20.61.5
Pavlov. Cond. lever-magazine prob. diff.0.50.61.2-1.10.7-0.7-0.3
Pavlov. Cond. response bias0.20.30.6-0.80.7-0.2-0.2
Pavlov. Cond. lever latency0.91.22.31.4-0.31.50.5
Pavlov. Cond. magazine entry latency3.23.76.2-2.31.8-2.5-0.4
Pavlov. Cond. change in total contacts2.12.96.8-2.60.8-2.10.1
Pavlov. Cond. index score2.73.46.3-2.51.1-2.4-0.4
Pavlov. Cond. latency score2.32.85.3-2.30.9-2.2-0.5
Pavlov. Cond. lever contacts0.81.12.1-1.40.6-1.40.3
Pavlov. Cond. magazine entry number5.16.311.03.3-2.23.00.5
Pavlov. Cond. intertrial magazine entries1.01.21.71.1-1.11.30.9
Pavlov. Cond. lever-magazine prob. diff.3.03.86.9-2.61.3-2.5-0.3
Pavlov. Cond. response bias2.12.85.0-2.21.2-2.20.0
Time in closed arm before self-admin0.40.50.8-0.9-0.5-0.90.2
Time in closed arm after self-admin0.60.71.10.8-0.61.1-0.7
Time in open arm before self-admin1.51.64.32.10.21.4-0.3
Time in open arm after self-admin0.50.61.40.40.90.11.2
Bone: periosteal estimation0.81.62.8-0.9-1.5-0.6-1.7
Bone: periosteal perimeter0.50.91.2-1.1-1.0-0.6-1.0
Bone: post-yield work2.73.65.5-1.9-2.3-1.4-1.9
Progressive ratio test 1 active lever presses1.81.93.61.5-1.91.10.6
Progressive ratio test 1 breakpoint1.61.73.21.4-1.81.00.7
Progressive ratio test 1 inactive lever presses0.40.51.41.2-0.30.4-0.5
Progressive ratio test 2 active lever presses1.71.94.91.3-2.20.90.2
Progressive ratio test 2 breakpoint2.52.85.01.8-2.21.60.6
Progressive ratio test 2 inactive lever presses2.42.85.71.9-2.41.30.0
Incentive Sensitization - Responses0.10.10.2-0.0-0.5-0.1-0.4
Incentive Sensitization - Breakpoint0.10.10.40.1-0.60.1-0.3
Sum of active levers in priming session hrs 5-62.62.54.7-2.21.5-1.11.4
Progressive ratio1.51.83.4-1.80.2-1.7-1.0
Food seeking constrained by brief footshock0.00.10.10.30.2-0.2-0.3
Seeking ratio, punishment vs. effort1.62.05.02.2-0.21.60.4
Retroperitoneal fat weight2.89.017.63.5-4.22.4-0.6
Reaction time number correct0.30.41.4-0.41.2-0.4-0.0
Reaction time mean minus median2.43.27.1-2.70.9-2.10.5
Reaction time mean minus median AUC1.41.83.2-1.81.0-1.50.9
Reaction time num false alarms0.91.23.31.80.31.30.0
Reaction time num false alarms AUC0.50.71.31.20.90.7-0.1
Reaction time trials correct on left0.30.41.4-0.41.2-0.4-0.0
Reaction time trials on left0.40.51.6-0.51.3-0.40.0
Reaction time mean0.20.30.7-0.7-0.3-0.00.9
Reaction time mean AUC0.30.30.7-0.7-0.4-0.00.9
Median of all reaction times0.10.20.3-0.2-0.50.30.5
Reaction time omissions0.71.01.7-0.91.0-1.30.6
Reaction time false alarm rate0.60.82.21.5-0.11.0-0.2
Reaction time premature initiation rate1.62.24.8-0.82.2-0.5-1.7
Reaction time premature initiations2.43.39.5-1.33.1-0.8-1.2
Std. dev. reaction times0.71.02.0-1.40.3-0.71.1
Reaction time trials completed0.40.51.6-0.51.3-0.40.0
Reaction time trials AUC0.20.31.1-0.31.0-0.2-0.1
Run reversals in cocaine runway, females1.61.55.70.30.2-0.5-2.4
Run reversals in cocaine runway, males0.20.20.30.5-0.40.40.4
Latency to leave start box in cocaine runway0.50.61.40.0-1.20.7-0.7
Latency to leave start box in cocaine runway, F0.10.10.2-0.3-0.20.4-0.1
Latency to leave start box in cocaine runway, M0.80.82.70.4-1.60.4-0.4
Std. dev. time between licks in bursts0.50.61.71.30.30.5-0.5
Total sessions with >9 infusions2.22.45.41.6-2.30.9-0.9
Short access day 1 total inactive lever presses2.73.05.02.2-2.01.8-0.3
Short access day 10 total inactive lever presses3.33.76.72.6-1.42.50.0
Short access day 1 total infusions2.22.44.81.8-2.21.0-0.8
Short access day 10 total infusions2.12.35.81.0-2.40.3-1.5
Short access total infusions1.71.94.31.3-2.10.5-1.2
Short access day 1 locomotion1.71.93.11.4-1.50.3-1.8
Short access day 10 total locomotion1.11.21.81.0-1.30.5-1.3
Short access total locomotion1.61.63.41.1-1.30.6-1.8
One hour access (0.3 mA shock)4.04.78.92.5-3.01.90.2
Compulsive drug intake1.71.76.7-0.42.6-0.50.0
One hour access (shock baseline)3.74.211.81.7-3.41.11.0
Social response proportion1.01.12.3-1.20.7-1.50.0
Social responses0.60.81.4-0.41.2-0.90.8
Social time0.10.20.4-0.30.6-0.20.4
Soleus weight2.57.412.43.5-2.82.90.8
Bone: stiffness2.13.47.4-2.70.3-2.2-1.0
Tibialis anterior weight6.923.537.0-6.15.1-5.3-1.4
Time to tail flick, vehicle, before self-admin1.41.53.0-1.2-0.5-1.0-1.7
Time to tail flick, vehicle, after self-admin2.02.24.0-1.00.4-2.0-1.9
Time to tail flick, test, before self-admin1.91.94.51.0-1.11.0-2.1
Time to tail flick, test, after self-admin0.10.10.1-0.20.1-0.30.3
Delta time to tail flick, vehicle, before/after SA0.20.20.7-0.20.4-0.8-0.3
Delta time to tail flick, test, before/after SA2.62.34.4-1.21.6-0.92.1
Tibia length1.64.49.6-3.11.1-2.60.3
Ambulatory time before self-admin1.21.22.3-1.50.6-1.50.2
Ambulatory time after self-admin0.10.10.2-0.4-0.30.10.1
Bone: tissue strength0.20.20.6-0.3-0.1-0.40.8
Total heroin consumption3.54.16.1-2.52.3-2.10.5
Bone: trabecular number1.11.83.0-1.6-0.1-1.7-1.2
Bone: trabecular spacing0.81.01.81.30.31.20.8
Bone: trabecular thickness0.40.51.40.4-1.20.7-0.1
Bone: trabecular tissue density2.53.54.22.1-1.62.01.8
Water consumed over 24 hours0.91.03.2-0.71.8-0.30.5
Number of responses in last shaping day0.80.92.11.40.11.2-0.1