Fgd2

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 BLA gene expression Fgd2 0.06 0.04 2.5e-03 0.03 0.04 0.04 0.04 1.2e-02 4.2e-03 2.2e-03 3.0e-03
2 Liver gene expression Fgd2 0.04 0.04 5.3e-05 0.03 0.03 0.03 0.04 1.1e-04 2.0e-04 9.4e-05 8.9e-05
3 NAcc gene expression Fgd2 0.05 0.04 4.2e-07 0.06 0.06 0.04 0.06 4.2e-07 2.2e-07 3.1e-05 3.8e-07

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
Bone: apparent density0.71.21.5-1.2-1.01.0
Area under the delay curve1.92.02.81.41.7-1.2
BMI with tail2.89.010.23.13.2-2.7
BMI without tail1.83.74.12.02.0-1.7
Body weight7.330.733.25.85.6-5.3
Weight adjusted by age1.92.23.51.91.3-1.2
Bone surface0.00.00.00.10.20.0
Bone volume0.00.00.00.00.2-0.1
Breakpoint value in progressive ratio session0.30.30.5-0.4-0.70.6
Number of licking bursts0.70.81.0-0.9-1.00.9
Context. condit. distance diff. score0.20.20.3-0.4-0.30.5
Locomotion velocity, session 10.60.70.8-0.9-0.70.9
Locomotion distance, session 13.44.34.6-2.1-2.02.1
Locomotion velocity, session 20.20.20.3-0.4-0.40.5
Locomotion distance, session 20.81.21.2-1.1-1.11.1
Locomotion velocity, session 30.10.20.40.10.3-0.6
Locomotion distance, session 30.40.50.8-0.9-0.70.5
Stereotopy head waving bouts, day 31.72.02.31.31.4-1.5
Stereotopy head waving duration, day 30.20.30.40.60.6-0.4
Locomotion velocity, session 70.20.30.4-0.6-0.60.1
Locomotion distance, session 71.41.82.3-1.5-1.41.0
Stereotopy head waving bouts, day 70.30.40.50.50.6-0.7
Stereotopy head waving duration, day 71.01.21.50.91.1-1.2
Locomotion velocity, session 80.00.00.00.00.1-0.0
Locomotion distance, session 80.71.01.1-1.0-0.91.0
Degree of sensitization distance0.00.00.00.1-0.10.0
Degree of sensitization stereotypy0.00.00.1-0.3-0.20.0
Conditioned locomotion1.92.33.01.41.4-1.7
Cocaine response after cond. corrected1.61.82.41.61.3-1.0
Cocaine response after cond. not corrected1.61.72.41.51.4-1.0
Cocaine response before conditioning0.00.00.1-0.2-0.20.0
Saline control response0.60.80.90.90.8-0.9
Bone: connectivity density0.50.80.9-1.0-0.80.9
Bone: cortical apparent density0.00.00.1-0.2-0.00.0
Bone: cortical area0.91.41.91.31.4-0.8
Bone: cortical porosity0.00.00.00.20.1-0.0
Bone: cortical porosity0.00.00.00.10.10.0
Bone: cortical thickness0.00.10.10.10.30.2
Bone: cortical thickness0.00.00.0-0.1-0.1-0.2
Bone: cortical tissue density0.00.00.0-0.20.0-0.1
Condit. Reinf. active minus inactive responses0.91.01.1-1.1-0.91.0
Condit. Reinf. active-inactive response ratio0.00.00.0-0.2-0.00.2
Condit. Reinf. active responses0.30.40.6-0.8-0.60.6
Condit. Reinf. inactive responses0.50.60.8-0.9-0.80.6
Incentive salience index mean0.30.40.4-0.6-0.50.7
Condit. Reinf. lever presses0.00.00.0-0.0-0.00.2
Condit. Reinf. active minus inactive responses0.81.01.1-1.0-1.01.0
Condit. Reinf. active-inactive response ratio0.30.30.4-0.4-0.60.7
Condit. Reinf. active responses0.81.11.2-1.1-1.00.9
Condit. Reinf. inactive responses0.00.00.1-0.20.1-0.3
Condit. Reinf. lever presses4.05.46.3-2.5-2.32.2
Condit. Reinf. lever reinforcers received1.52.22.4-1.6-1.51.4
Conditioned reinforcement - actives0.30.30.60.50.4-0.8
Conditioned reinforcement - inactives0.40.40.7-0.8-0.70.4
Conditioned locomotion0.40.50.80.50.7-0.9
Patch foraging indifference point 0 sec0.10.20.50.30.3-0.7
Patch foraging indifference point AUC0.10.10.2-0.5-0.30.1
Delay disc. indifference point, 0s delay0.50.50.70.80.9-0.5
Delay disc. indifference point, 16s delay0.60.61.30.61.1-0.5
Delay disc. indifference point, 2s delay0.00.00.0-0.10.10.2
Delay disc. indifference point, 24s delay4.64.55.52.22.3-1.7
Delay disc. indifference point, 4s delay1.92.02.41.41.6-1.3
Delay disc. indifference point, 8s delay2.22.32.81.41.7-1.5
Indifference point function ln k0.10.10.1-0.3-0.30.4
Indifference point function log k0.10.10.1-0.3-0.30.4
Patch foraging total patch changes 0 sec0.10.20.40.30.2-0.6
Patch foraging total patch changes 12 sec0.10.10.2-0.4-0.40.0
Patch foraging total patch changes 18 sec0.40.50.90.40.6-0.9
Patch foraging total patch changes 24 sec0.50.60.8-0.7-0.90.6
Patch foraging total patch changes 6 sec0.00.00.10.10.0-0.3
Patch foraging time to switch 0 sec1.62.42.81.71.6-1.4
Patch foraging water rate 0 sec0.30.50.7-0.8-0.80.6
Patch foraging water rate 12 sec0.10.20.2-0.4-0.40.4
Patch foraging water rate 18 sec0.60.81.0-1.0-0.90.9
Patch foraging water rate 24 sec0.30.40.4-0.7-0.60.6
Patch foraging water rate 6 sec0.10.20.2-0.4-0.40.4
Seeking ratio, delayed vs. immediate footshock0.00.00.1-0.00.20.1
Distance traveled before self-admin0.60.60.80.80.7-0.9
Distance traveled after self-admin0.00.10.10.40.0-0.1
Extensor digitorum longus weight0.20.91.1-1.0-1.00.9
Bone: elastic displacement0.00.00.00.0-0.10.2
Bone: elastic work0.10.20.30.50.4-0.2
Bone: endosteal estimation3.57.68.02.72.8-2.8
Bone: endosteal perimeter2.44.95.42.32.3-2.1
Epididymis fat weight2.25.26.22.52.3-2.0
Delta time in closed arm before/after self-admin1.91.92.31.51.3-1.3
Delta time in open arm before/after self-admin0.90.91.2-1.1-0.80.8
Diff in mean of infusions in LGA sessions0.80.91.2-0.7-1.11.0
Delay discount exponential model param1.61.62.4-1.2-1.51.0
Extinction: sum of active levers before priming0.20.20.5-0.1-0.70.5
Active lever presses in extinction session 60.20.20.30.60.4-0.2
Bone: final force5.38.59.32.93.1-2.8
Bone: final moment4.67.58.22.72.9-2.6
Food consumed during 24 hour testing period0.60.81.21.10.7-0.8
Glucose0.20.30.70.80.5-0.2
Heart weight1.82.53.5-1.3-1.51.9
Delay discount hyperbolic model param1.11.21.8-1.0-1.30.8
Intermittent access intake day 1-15 change0.30.30.60.30.5-0.8
Intermittent access intake escalation0.70.71.10.50.8-1.0
Intermittent access intake escalation 20.40.40.6-0.8-0.70.4
Intermitt. access day 1 inactive lever presses0.10.10.2-0.2-0.40.2
Intermitt. access day 15 inactive lever presses0.80.91.10.80.9-1.1
Intermitt. access escalation Index0.20.20.4-0.3-0.30.6
Intermittent access day 1 total infusions0.30.30.3-0.5-0.60.6
Intermittent access day 15 total infusions0.00.00.00.10.1-0.2
Intermittent access terminal intake (last 3 days)0.10.10.20.30.2-0.4
Intermittent access total infusions0.10.10.2-0.4-0.40.2
Intermittent access day 1 locomotion0.10.10.10.30.2-0.4
Intermittent access day 15 total locomotion3.43.74.61.71.9-2.1
Intermittent access total locomotion1.11.21.80.81.1-1.3
Intermittent access standard deviation0.50.50.80.70.5-0.9
Left kidney weight3.08.38.72.83.0-2.9
Right kidney weight3.710.410.93.23.2-3.3
Cocaine induced anxiety0.20.20.3-0.6-0.40.3
Post-drug Anxiety0.40.40.4-0.6-0.70.7
Baseline Anxiety0.10.10.20.2-0.40.4
Tail length0.92.93.31.71.5-1.8
Length with tail2.28.18.72.92.7-3.0
Length without tail1.94.14.32.12.0-2.0
Times rat made contact with spout3.94.65.5-2.3-2.11.9
Lifetime Intake0.00.00.0-0.0-0.0-0.2
Liver weight, left4.16.68.62.12.6-2.9
Liver weight, right1.82.94.21.51.5-2.0
Locomotor activity0.10.10.20.30.2-0.4
Locomotor testing distance0.00.00.00.20.1-0.1
Locomotor testing rearing1.01.51.61.21.2-1.3
Locomotion in novel chamber0.20.30.4-0.6-0.30.6
Locomotion in novel chamber post-restriction1.72.02.51.11.5-1.6
Fecal boli incidents, locomotor time 10.00.00.1-0.00.3-0.1
Change in fecal boli incidents, locomotor task0.50.51.01.00.4-0.5
Time >=10cm from walls, locomotor time 11.71.71.81.41.3-1.3
Bouts of movement, locomotor time 10.20.30.4-0.6-0.40.5
Total resting periods, locomotor time 10.10.10.2-0.4-0.10.2
Rest time, locomotor task time 10.20.20.20.40.5-0.4
Distance moved, locomotor task time 10.10.10.10.20.3-0.3
Vertical activity count, locomotor time 10.60.60.70.70.8-0.8
Time >=10cm from walls, locomotor time 27.27.69.73.12.4-2.7
Bouts of movement, locomotor time 20.10.10.10.00.4-0.3
Total resting periods, locomotor time 20.00.00.1-0.3-0.00.2
Rest time, locomotor task time 20.00.00.10.20.3-0.0
Distance moved, locomotor task time 21.71.92.51.41.2-1.6
Vertical activity count, locomotor time 21.01.11.31.10.9-1.1
Light reinforcement 11.83.23.81.81.6-1.9
Light reinforcement 22.63.43.71.91.7-1.9
Bone: marrow area3.67.98.22.82.8-2.9
Bone: maximum diameter1.01.82.31.41.5-1.0
Bone: maximum force2.13.74.21.92.1-1.8
Bone: maximum moment1.72.93.41.71.8-1.6
Mean time between licks in bursts0.50.70.9-0.7-0.90.9
Mean num. licks in bursts0.30.30.6-0.7-0.50.5
Cd content in liver0.70.81.10.80.7-1.1
Co content in liver2.22.62.81.61.5-1.7
Cu content in liver3.64.44.6-2.1-2.12.1
Fe content in liver3.84.65.12.02.1-2.3
K content in liver1.31.31.4-1.1-1.21.1
Mg content in liver2.22.32.7-1.4-1.51.6
Mn content in liver0.00.10.1-0.2-0.20.3
Na content in liver0.30.30.5-0.6-0.70.4
Rb content in liver0.20.20.20.50.5-0.4
Se content in liver2.63.23.7-1.7-1.81.9
Sr content in liver0.00.00.0-0.1-0.10.1
Zn content in liver2.02.32.91.71.6-1.2
Bone: minimum diameter2.44.55.52.32.2-1.7
Time in familiar zone, hab. session 10.00.00.0-0.1-0.00.0
Time in novel zone, hab. session 10.30.30.40.60.5-0.6
Total zone transitions, hab. session 13.34.65.0-2.2-2.12.0
Total locomotion distance, hab. session 12.02.83.0-1.7-1.61.7
Locomotion velocity, hab. session 11.82.62.8-1.7-1.51.7
Time in familiar zone, hab. session 21.21.21.4-1.2-1.01.1
Time in novel zone, hab. session 21.21.21.51.01.0-1.2
Total zone transitions, hab. session 20.50.60.7-0.9-0.80.7
Total locomotion distance, hab. session 22.53.33.8-1.9-1.81.7
Locomotion velocity, hab. session 23.14.24.7-2.2-2.02.0
Novel to familiar place preference ratio0.50.60.80.90.7-0.6
Novelty place preference0.40.40.60.80.6-0.5
Time in novel zone, NPP test0.50.50.70.80.7-0.6
Total zone transitions, NPP test1.62.32.5-1.6-1.51.5
Total locomotion distance, NPP test1.31.82.0-1.4-1.31.3
Locomotion velocity, NPP test2.02.93.0-1.7-1.71.7
Intraocular pressure1.31.92.51.01.6-1.4
Delta distance traveled before/after self-admin0.50.50.7-0.6-0.80.8
Delta ambulatory time before/after self-admin0.80.81.0-0.7-1.01.0
Parametrial fat weight1.32.63.81.41.5-1.9
Pavlov. Cond. lever latency0.20.30.50.40.5-0.7
Pavlov. Cond. magazine entry latency0.30.30.4-0.6-0.60.6
Pavlov. Cond. change in total contacts0.60.60.70.80.9-0.8
Pavlov. Cond. index score0.00.00.1-0.1-0.10.3
Pavlov. Cond. latency score0.00.00.00.00.00.2
Pavlov. Cond. lever contacts0.10.20.3-0.3-0.40.5
Pavlov. Cond. magazine entry number0.60.70.90.80.8-1.0
Pavlov. Cond. intertrial magazine entries0.10.10.1-0.3-0.40.2
Pavlov. Cond. lever-magazine prob. diff.0.00.00.1-0.1-0.00.2
Pavlov. Cond. response bias0.70.91.1-0.9-0.91.0
Pavlov. Cond. lever latency2.43.34.12.01.8-1.6
Pavlov. Cond. magazine entry latency0.10.10.20.20.4-0.4
Pavlov. Cond. change in total contacts1.72.33.1-1.8-1.41.3
Pavlov. Cond. index score0.70.91.4-1.2-0.90.7
Pavlov. Cond. latency score0.50.60.8-0.9-0.70.6
Pavlov. Cond. lever contacts2.02.73.9-2.0-1.61.3
Pavlov. Cond. magazine entry number0.00.00.00.1-0.10.2
Pavlov. Cond. intertrial magazine entries0.71.01.1-1.0-1.10.9
Pavlov. Cond. lever-magazine prob. diff.0.40.50.9-0.9-0.70.5
Pavlov. Cond. response bias1.21.72.7-1.7-1.20.9
Time in closed arm before self-admin0.40.40.5-0.6-0.70.6
Time in closed arm after self-admin0.10.10.20.40.3-0.3
Time in open arm before self-admin0.40.50.5-0.7-0.70.6
Time in open arm after self-admin2.42.63.1-1.8-1.61.5
Bone: periosteal estimation2.96.06.52.52.6-2.3
Bone: periosteal perimeter1.62.63.01.71.7-1.3
Bone: post-yield work0.20.30.40.50.6-0.6
Progressive ratio test 1 active lever presses0.00.00.0-0.1-0.20.1
Progressive ratio test 1 breakpoint0.00.00.1-0.0-0.20.1
Progressive ratio test 1 inactive lever presses0.50.60.80.60.7-0.9
Progressive ratio test 2 active lever presses0.10.10.1-0.3-0.30.0
Progressive ratio test 2 breakpoint0.10.10.2-0.4-0.40.1
Progressive ratio test 2 inactive lever presses0.81.01.2-1.1-1.10.6
Incentive Sensitization - Responses1.31.41.6-1.3-1.21.0
Incentive Sensitization - Breakpoint0.80.81.1-1.0-0.90.8
Sum of active levers in priming session hrs 5-60.40.40.6-0.2-0.80.8
Progressive ratio2.32.73.61.21.7-1.9
Food seeking constrained by brief footshock0.10.10.2-0.10.40.2
Seeking ratio, punishment vs. effort1.01.32.3-0.7-1.01.5
Retroperitoneal fat weight1.55.05.52.42.2-2.2
Reaction time number correct0.20.40.80.30.4-0.9
Reaction time mean minus median0.10.10.2-0.00.5-0.3
Reaction time mean minus median AUC0.20.30.60.20.8-0.4
Reaction time num false alarms0.40.60.8-0.8-0.90.5
Reaction time num false alarms AUC1.21.62.3-1.2-1.51.0
Reaction time trials correct on left0.20.40.80.30.4-0.9
Reaction time trials on left0.20.30.80.30.4-0.9
Reaction time mean0.30.50.70.60.9-0.6
Reaction time mean AUC0.70.91.30.81.1-0.9
Median of all reaction times0.50.60.80.80.9-0.7
Reaction time omissions0.00.00.0-0.10.2-0.0
Reaction time false alarm rate1.42.02.4-1.2-1.51.5
Reaction time premature initiation rate0.20.20.3-0.4-0.50.5
Reaction time premature initiations0.00.00.0-0.1-0.1-0.2
Std. dev. reaction times0.10.10.20.10.4-0.1
Reaction time trials completed0.20.30.80.30.4-0.9
Reaction time trials AUC0.20.30.80.30.5-0.9
Run reversals in cocaine runway, females0.20.20.30.20.5-0.5
Run reversals in cocaine runway, males0.10.10.4-0.60.1-0.1
Latency to leave start box in cocaine runway0.20.20.4-0.0-0.50.6
Latency to leave start box in cocaine runway, F0.10.10.30.0-0.40.5
Latency to leave start box in cocaine runway, M0.00.00.00.1-0.00.1
Std. dev. time between licks in bursts1.01.22.21.51.0-0.6
Total sessions with >9 infusions0.00.00.00.20.0-0.2
Short access day 1 total inactive lever presses0.10.10.1-0.3-0.40.4
Short access day 10 total inactive lever presses0.00.00.0-0.0-0.0-0.0
Short access day 1 total infusions1.21.21.5-1.1-1.21.0
Short access day 10 total infusions0.10.10.1-0.3-0.40.2
Short access total infusions0.00.00.0-0.1-0.2-0.1
Short access day 1 locomotion0.00.00.00.1-0.20.2
Short access day 10 total locomotion0.60.71.3-0.6-1.10.7
Short access total locomotion0.00.00.10.2-0.2-0.0
One hour access (0.3 mA shock)1.31.62.0-1.4-1.31.0
Compulsive drug intake2.32.42.9-1.3-1.61.7
One hour access (shock baseline)0.10.10.2-0.00.3-0.4
Social response proportion0.10.10.20.50.2-0.1
Social responses0.00.00.00.1-0.10.2
Social time0.20.30.4-0.6-0.50.5
Soleus weight0.61.72.51.61.3-1.0
Bone: stiffness1.52.42.81.41.7-1.6
Tibialis anterior weight0.82.62.9-1.5-1.71.7
Time to tail flick, vehicle, before self-admin1.81.82.11.11.5-1.5
Time to tail flick, vehicle, after self-admin0.10.10.10.0-0.30.3
Time to tail flick, test, before self-admin0.10.10.1-0.4-0.40.3
Time to tail flick, test, after self-admin0.10.10.2-0.50.00.1
Delta time to tail flick, vehicle, before/after SA0.70.71.0-0.6-0.91.0
Delta time to tail flick, test, before/after SA1.31.21.40.81.2-1.2
Tibia length2.36.47.22.42.5-2.7
Ambulatory time before self-admin0.30.30.40.50.5-0.6
Ambulatory time after self-admin0.20.20.3-0.3-0.60.6
Bone: tissue strength0.00.00.0-0.1-0.00.0
Total heroin consumption1.21.42.0-1.1-1.41.0
Bone: trabecular number1.21.92.3-1.5-1.31.3
Bone: trabecular spacing2.02.52.61.61.6-1.6
Bone: trabecular thickness0.20.20.40.20.4-0.6
Bone: trabecular tissue density0.00.10.1-0.4-0.0-0.1
Water consumed over 24 hours0.91.11.6-0.7-1.11.3
Number of responses in last shaping day0.60.71.1-0.2-1.00.9